Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000001159 |
| rosa_multiflora | Rmu_sc0000694.1_g000012 Rmu_sc0032479.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00226020 |
| rosa_samantha | Rh5BG354100 Rh5DG369600 Rh7AG445400 Rh7BG417700 Rh7DG434200 |
| rosa_wichuraiana | Rw7G037020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 39 |
| AciI | CCGC | 1 cut(s) | 91 |
| AclWI | GGATC | 1 cut(s) | 278 |
| AcyI | GRCGYC | 1 cut(s) | 234 |
| AgsI | TTSAA | 2 cut(s) | 100, 214 |
| AluBI | AGCT | 2 cut(s) | 178, 284 |
| AluI | AGCT | 2 cut(s) | 178, 284 |
| Alw26I | GTCTC | 2 cut(s) | 74, 213 |
| AlwI | GGATC | 1 cut(s) | 278 |
| AoxI | GGCC | 1 cut(s) | 189 |
| AseI | ATTAAT | 1 cut(s) | 156 |
| AspLEI | GCGC | 1 cut(s) | 251 |
| AsuHPI | GGTGA | 2 cut(s) | 20, 130 |
| AsuNHI | GCTAGC | 1 cut(s) | 260 |
| BauI | CACGAG | 1 cut(s) | 148 |
| BccI | CCATC | 1 cut(s) | 175 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 253, 287 |
| BcoDI | GTCTC | 2 cut(s) | 74, 213 |
| BfaI | CTAG | 3 cut(s) | 27, 228, 261 |
| BmtI | GCTAGC | 1 cut(s) | 264 |
| BpuEI | CTTGAG | 1 cut(s) | 91 |
| BsaHI | GRCGYC | 1 cut(s) | 234 |
| BseGI | GGATG | 1 cut(s) | 190 |
| Bsh1285I | CGRYCG | 1 cut(s) | 290 |
| BshFI | GGCC | 1 cut(s) | 191 |
| BsiEI | CGRYCG | 1 cut(s) | 290 |
| BsmAI | GTCTC | 2 cut(s) | 74, 213 |
| BsnI | GGCC | 1 cut(s) | 191 |
| Bsp143I | GATC | 2 cut(s) | 270, 287 |
| BspACI | CCGC | 1 cut(s) | 91 |
| BspANI | GGCC | 1 cut(s) | 191 |
| BspHI | TCATGA | 1 cut(s) | 105 |
| BspOI | GCTAGC | 1 cut(s) | 264 |
| BspPI | GGATC | 1 cut(s) | 278 |
| BssMI | GATC | 2 cut(s) | 270, 287 |
| BssNI | GRCGYC | 1 cut(s) | 234 |
| BssSI | CACGAG | 1 cut(s) | 148 |
| Bst2BI | CACGAG | 1 cut(s) | 148 |
| BstACI | GRCGYC | 1 cut(s) | 234 |
| BstC8I | GCNNGC | 3 cut(s) | 247, 262, 298 |
| BstF5I | GGATG | 1 cut(s) | 190 |
| BstHHI | GCGC | 1 cut(s) | 251 |
| BstKTI | GATC | 2 cut(s) | 273, 290 |
| BstMAI | GTCTC | 2 cut(s) | 74, 213 |
| BstMBI | GATC | 2 cut(s) | 270, 287 |
| BstMCI | CGRYCG | 1 cut(s) | 290 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 257 |
| BstNSI | RCATGY | 1 cut(s) | 300 |
| BsuRI | GGCC | 1 cut(s) | 191 |
| BtsCI | GGATG | 1 cut(s) | 190 |
| Cac8I | GCNNGC | 3 cut(s) | 247, 262, 298 |
| CciI | TCATGA | 1 cut(s) | 105 |
| CfoI | GCGC | 1 cut(s) | 251 |
| CseI | GACGC | 1 cut(s) | 223 |
| CviAII | CATG | 2 cut(s) | 106, 297 |
| CviJI | RGCY | 5 cut(s) | 178, 191, 260, 284, 327 |
| CviKI_1 | RGCY | 5 cut(s) | 178, 191, 260, 284, 327 |
| DpnI | GATC | 2 cut(s) | 272, 289 |
| DpnII | GATC | 2 cut(s) | 270, 287 |
| FaeI | CATG | 2 cut(s) | 109, 300 |
| FaiI | YATR | 7 cut(s) | 39, 47, 107, 165, 224, 298, 312 |
| FatI | CATG | 2 cut(s) | 105, 296 |
| FokI | GGATG | 1 cut(s) | 197 |
| FspBI | CTAG | 3 cut(s) | 27, 228, 261 |
| GlaI | GCGC | 1 cut(s) | 250 |
| HaeIII | GGCC | 1 cut(s) | 191 |
| HgaI | GACGC | 1 cut(s) | 223 |
| HhaI | GCGC | 1 cut(s) | 251 |
| Hin1I | GRCGYC | 1 cut(s) | 234 |
| Hin1II | CATG | 2 cut(s) | 109, 300 |
| Hin6I | GCGC | 1 cut(s) | 249 |
| HinP1I | GCGC | 1 cut(s) | 249 |
| HphI | GGTGA | 2 cut(s) | 20, 130 |
| Hpy188I | TCNGA | 1 cut(s) | 292 |
| Hpy188III | TCNNGA | 2 cut(s) | 106, 128 |
| HpyAV | CCTTC | 2 cut(s) | 208, 269 |
| HpyCH4V | TGCA | 1 cut(s) | 86 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 257 |
| Hsp92I | GRCGYC | 1 cut(s) | 234 |
| Hsp92II | CATG | 2 cut(s) | 109, 300 |
| HspAI | GCGC | 1 cut(s) | 249 |
| Kzo9I | GATC | 2 cut(s) | 270, 287 |
| LpnPI | CCDG | 2 cut(s) | 141, 286 |
| MaeI | CTAG | 3 cut(s) | 27, 228, 261 |
| MaeIII | GTNAC | 1 cut(s) | 136 |
| MalI | GATC | 2 cut(s) | 272, 289 |
| MboI | GATC | 2 cut(s) | 270, 287 |
| MboII | GAAGA | 1 cut(s) | 52 |
| MluCI | AATT | 1 cut(s) | 120 |
| MnlI | CCTC | 5 cut(s) | 4, 144, 181, 250, 286 |
| MseI | TTAA | 2 cut(s) | 156, 174 |
| MslI | CAYNNNNRTG | 1 cut(s) | 301 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 257 |
| NdeII | GATC | 2 cut(s) | 270, 287 |
| NheI | GCTAGC | 1 cut(s) | 260 |
| NlaIII | CATG | 2 cut(s) | 109, 300 |
| NmeAIII | GCCGAG | 1 cut(s) | 217 |
| NmuCI | GTSAC | 1 cut(s) | 136 |
| NspI | RCATGY | 1 cut(s) | 300 |
| PaeI | GCATGC | 1 cut(s) | 300 |
| PagI | TCATGA | 1 cut(s) | 105 |
| Ple19I | CGATCG | 1 cut(s) | 290 |
| PshBI | ATTAAT | 1 cut(s) | 156 |
| PsiI | TTATAA | 1 cut(s) | 39 |
| PvuI | CGATCG | 1 cut(s) | 290 |
| RseI | CAYNNNNRTG | 1 cut(s) | 301 |
| SaqAI | TTAA | 2 cut(s) | 156, 174 |
| Sau3AI | GATC | 2 cut(s) | 270, 287 |
| SetI | ASST | 5 cut(s) | 10, 105, 143, 180, 286 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 301 |
| SmlI | CTYRAG | 1 cut(s) | 70 |
| SmoI | CTYRAG | 1 cut(s) | 70 |
| SphI | GCATGC | 1 cut(s) | 300 |
| Sse9I | AATT | 1 cut(s) | 120 |
| SsiI | CCGC | 1 cut(s) | 91 |
| SspI | AATATT | 1 cut(s) | 43 |
| SspMI | CTAG | 3 cut(s) | 27, 228, 261 |
| TaqI | TCGA | 2 cut(s) | 273, 286 |
| TasI | AATT | 1 cut(s) | 120 |
| Tru1I | TTAA | 2 cut(s) | 156, 174 |
| Tru9I | TTAA | 2 cut(s) | 156, 174 |
| TseFI | GTSAC | 1 cut(s) | 136 |
| Tsp45I | GTSAC | 1 cut(s) | 136 |
| TspDTI | ATGAA | 1 cut(s) | 122 |
| VspI | ATTAAT | 1 cut(s) | 156 |
| XceI | RCATGY | 1 cut(s) | 300 |
| XspI | CTAG | 3 cut(s) | 27, 228, 261 |