Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018648

Physical Location & Seq

Genomic Coordinates Reverse (-)

9482865 .. 9484202

Gene Structure 1338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGTCGAGGGTTTCAAGTCTTCTTGGGATTCTCCCGGTATATCCTACTAGATATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTTGTTGATAGTTATGTTAAGGCCGGCATTGTTCAGGAGTCGGTCAAGCTTCTCAATCAGATGAAGAAACTGGGTGTGGAGCAAAGTCTTAAGTCGTATGAGGTTCTATTTAAGAGTATTTTGCGAAGGGGGCGGTATATGACGGGGAAGAGGGTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

86

Amino Acids

10.03

Weight (kDa)

9.93

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	33 - 72	5.6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018648)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001159
rosa_multiflora	Rmu_sc0000694.1_g000012 Rmu_sc0032479.1_g000003
rosa_roxburghii	Rroxscaffold_3G00226020
rosa_samantha	Rh5BG354100 Rh5DG369600 Rh7AG445400 Rh7BG417700 Rh7DG434200
rosa_wichuraiana	Rw7G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	232
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
AoxI	GGCC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	37
BfaI	CTAG	1 cut(s)	50
BfrI	CTTAAG	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	37, 123
BslI	CCNNNNNNNGG	1 cut(s)	65
BsnI	GGCC	1 cut(s)	122
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	122
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	122
Bst6I	CTCTTC	2 cut(s)	95, 242
BstAFI	CTTAAG	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	254
CviJI	RGCY	2 cut(s)	122, 148
CviKI_1	RGCY	2 cut(s)	122, 148
CviQI	GTAC	1 cut(s)	254
Eam1104I	CTCTTC	2 cut(s)	95, 242
EarI	CTCTTC	2 cut(s)	95, 242
Eco47I	GGWCC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	85
FaiI	YATR	6 cut(s)	42, 56, 114, 198, 237, 239
FokI	GGATG	1 cut(s)	92
FspBI	CTAG	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	2 cut(s)	37, 123
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	2 cut(s)	30, 137
HpaII	CCGG	2 cut(s)	37, 123
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	58, 219
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	4 cut(s)	50, 119, 136, 155
MaeI	CTAG	1 cut(s)	50
MboII	GAAGA	4 cut(s)	13, 82, 175, 259
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	4 cut(s)	76, 98, 193, 243
MroNI	GCCGGC	1 cut(s)	122
MseI	TTAA	4 cut(s)	117, 189, 210, 259
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	2 cut(s)	37, 123
MspR9I	CCNGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	229
NaeI	GCCGGC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	37
NgoMIV	GCCGGC	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	4 cut(s)	117, 189, 210, 259
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	37
SetI	ASST	3 cut(s)	90, 150, 204
SinI	GGWCC	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	35
TaqI	TCGA	1 cut(s)	7
TaqII	GACCGA	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	4 cut(s)	117, 189, 210, 259
Tru9I	TTAA	4 cut(s)	117, 189, 210, 259
TspDTI	ATGAA	3 cut(s)	82, 86, 176
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	85
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.