Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0018648

Physical Location & Seq

Genomic Coordinates Forward (+)

61784978 .. 61785466

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG434200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTCCTTCAAGAAGCTAAGACTTCCGACTAAGCCCTCCAATTCTTCCGATGGGTCGAGGGTTCCAAATGATAGGGAGACCCATTTGAAGATAATTGAGATTCCAGGCCAAGCTTCGAAGCTCAACTATGCCCGGTGTATCCTACTAGATATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTTATTGATAGTTATGGCATGGCCGGCATTGTTCAGGAGTCTGACAAGCTTCTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

84

Amino Acids

9.51

Weight (kDa)

7.88

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018648)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001159
rosa_multiflora	Rmu_sc0000694.1_g000012 Rmu_sc0032479.1_g000003
rosa_roxburghii	Rroxscaffold_3G00226020
rosa_samantha	Rh5BG354100 Rh5DG369600 Rh7AG445400 Rh7BG417700 Rh7DG434200
rosa_wichuraiana	Rw7G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	10, 88
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	4 cut(s)	16, 113, 121, 244
AluI	AGCT	4 cut(s)	16, 113, 121, 244
Alw26I	GTCTC	1 cut(s)	71
AoxI	GGCC	2 cut(s)	106, 216
AspS9I	GGNCC	1 cut(s)	181
AsuC2I	CCSGG	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	181
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	105
BciVI	GTATCC	1 cut(s)	149
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	105, 133
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	2 cut(s)	105, 133
Bpu14I	TTCGAA	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	108, 218
BsiSI	CCGG	2 cut(s)	133, 219
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	108, 218
Bso31I	GGTCTC	1 cut(s)	71
Bsp119I	TTCGAA	1 cut(s)	116
BspANI	GGCC	2 cut(s)	108, 218
BspLI	GGNNCC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	17, 30
BstF5I	GGATG	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	103, 131
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	108, 218
BtsCI	GGATG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	181
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	7 cut(s)	16, 34, 108, 113, 121, 218, 244
CviKI_1	RGCY	7 cut(s)	16, 34, 108, 113, 121, 218, 244
DdeI	CTNAG	2 cut(s)	17, 30
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	217
FaiI	YATR	4 cut(s)	129, 152, 210, 215
FatI	CATG	1 cut(s)	213
FokI	GGATG	1 cut(s)	188
FspBI	CTAG	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	108, 218
HapII	CCGG	2 cut(s)	133, 219
Hin1II	CATG	1 cut(s)	217
HindIII	AAGCTT	2 cut(s)	111, 242
HinfI	GANTC	2 cut(s)	100, 233
HpaII	CCGG	2 cut(s)	133, 219
Hpy188I	TCNGA	3 cut(s)	27, 49, 238
Hpy188III	TCNNGA	2 cut(s)	10, 230
HpyAV	CCTTC	2 cut(s)	16, 154
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	2 cut(s)	17, 30
Hsp92II	CATG	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
LpnPI	CCDG	5 cut(s)	90, 117, 146, 215, 232
MaeI	CTAG	1 cut(s)	146
MboII	GAAGA	3 cut(s)	36, 100, 178
MluCI	AATT	3 cut(s)	40, 93, 250
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	4 cut(s)	46, 51, 172, 194
MroNI	GCCGGC	1 cut(s)	218
MspI	CCGG	2 cut(s)	133, 219
MspR9I	CCNGG	2 cut(s)	105, 133
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	219
NaeI	GCCGGC	1 cut(s)	220
NciI	CCSGG	1 cut(s)	133
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	63
NspV	TTCGAA	1 cut(s)	116
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	181
PspPPI	RGGWCCY	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	105, 133
SetI	ASST	5 cut(s)	18, 115, 123, 186, 246
SfuI	TTCGAA	1 cut(s)	116
SinI	GGWCC	1 cut(s)	181
Sse9I	AATT	3 cut(s)	40, 93, 250
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	103, 131
TaqI	TCGA	2 cut(s)	56, 116
TasI	AATT	3 cut(s)	40, 93, 250
TfiI	GAWTC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	178, 182
VpaK11BI	GGWCC	1 cut(s)	181
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.