Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0018648

Physical Location & Seq

Genomic Coordinates Forward (+)

47159527 .. 47160774

Gene Structure 1248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG417700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTTATTGATAGTTGTGGTAAGGCCGGCATTGCTCAGGAGTCGGTCAAGCTTCTCAATCAAATGAAGAAACTGGGTGTGGAACAAAGTCTCAAGTCGTATGAGGCTCAGTTTAAGAGTATTTTGCGAAGGGGGCGGTATATGACGGGGAAGAGATTGGAGACTGCAAAGTGGTTTTTCGAGGACATGAAATGTAGAGGAATTAGTCCTGATGTTGTCACCTATAACACGAGGATTAATGGGTATAATCAGTTTAAGCTGATGGATGAGGCCGAGCAGTTGTTTATAGAGTTGAAGGGAGACATATCTAGGGGCGTCATTTGGGCGTGCGCTAACAAGGCTAGCAAAAGGGTCGAAGGCAGCTCGGGGGCGCGCTGGTGTCGGCATAAGGGTTACCAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

148

Amino Acids

16.97

Weight (kDa)

9.49

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	61 - 96	1.5e-08	PPR repeat family
PPR_1	PF12854	80 - 111	1.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018648)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001159
rosa_multiflora	Rmu_sc0000694.1_g000012 Rmu_sc0032479.1_g000003
rosa_roxburghii	Rroxscaffold_3G00226020
rosa_samantha	Rh5BG354100 Rh5DG369600 Rh7AG445400 Rh7BG417700 Rh7DG434200
rosa_wichuraiana	Rw7G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	415
AciI	CCGC	1 cut(s)	178
AcyI	GRCGYC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	337
AluBI	AGCT	3 cut(s)	94, 301, 405
AluI	AGCT	3 cut(s)	94, 301, 405
Alw26I	GTCTC	3 cut(s)	137, 197, 336
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	2 cut(s)	66, 312
ApeKI	GCWGC	1 cut(s)	402
AseI	ATTAAT	1 cut(s)	279
AspLEI	GCGC	3 cut(s)	374, 415, 417
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	253
AsuNHI	GCTAGC	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	31
BauI	CACGAG	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	1 cut(s)	298
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BcoDI	GTCTC	3 cut(s)	137, 197, 336
BfaI	CTAG	2 cut(s)	351, 384
BisI	GCNGC	1 cut(s)	403
BlsI	GCNGC	1 cut(s)	404
Bme18I	GGWCC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	125
BmtI	GCTAGC	1 cut(s)	387
BmuI	ACTGGG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	2 cut(s)	26, 72
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	2 cut(s)	31, 313
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMI	GCAATG	2 cut(s)	26, 72
BseMII	CTCAG	2 cut(s)	92, 164
BseNI	ACTGG	1 cut(s)	120
BsePI	GCGCGC	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	68, 314
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	3 cut(s)	137, 197, 336
BsnI	GGCC	2 cut(s)	68, 314
BsoBI	CYCGRG	1 cut(s)	406
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	2 cut(s)	68, 314
BspCNI	CTCAG	2 cut(s)	91, 163
BspFNI	CGCG	1 cut(s)	415
BspOI	GCTAGC	1 cut(s)	387
BsrDI	GCAATG	2 cut(s)	26, 72
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	439
BssHII	GCGCGC	1 cut(s)	413
BssNI	GRCGYC	1 cut(s)	357
BssSI	CACGAG	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	439
Bst2BI	CACGAG	1 cut(s)	271
Bst6I	CTCTTC	2 cut(s)	41, 188
BstACI	GRCGYC	1 cut(s)	357
BstC8I	GCNNGC	4 cut(s)	70, 370, 385, 415
BstDEI	CTNAG	2 cut(s)	78, 150
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	2 cut(s)	31, 313
BstFNI	CGCG	1 cut(s)	415
BstHHI	GCGC	3 cut(s)	374, 415, 417
BstMAI	GTCTC	3 cut(s)	137, 197, 336
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 175, 380
BstPI	GGTNACC	1 cut(s)	434
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	68, 314
BtsCI	GGATG	2 cut(s)	31, 313
Cac8I	GCNNGC	4 cut(s)	70, 370, 385, 415
CfoI	GCGC	3 cut(s)	374, 415, 417
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	31
CseI	GACGC	1 cut(s)	346
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	8 cut(s)	68, 94, 149, 301, 314, 383, 405, 444
CviKI_1	RGCY	8 cut(s)	68, 94, 149, 301, 314, 383, 405, 444
DdeI	CTNAG	2 cut(s)	78, 150
Eam1104I	CTCTTC	2 cut(s)	41, 188
EarI	CTCTTC	2 cut(s)	41, 188
Eco130I	CCWWGG	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	406
Eco91I	GGTNACC	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	439
FaeI	CATG	1 cut(s)	232
FaiI	YATR	9 cut(s)	144, 183, 185, 230, 267, 288, 329, 347, 429
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	403
FokI	GGATG	2 cut(s)	38, 320
Fsp4HI	GCNGC	1 cut(s)	403
FspBI	CTAG	2 cut(s)	351, 384
GlaI	GCGC	3 cut(s)	373, 414, 416
GluI	GCNGC	1 cut(s)	403
HaeIII	GGCC	2 cut(s)	68, 314
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	3 cut(s)	374, 415, 417
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	3 cut(s)	372, 413, 415
HinP1I	GCGC	3 cut(s)	372, 413, 415
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	80, 251
HpyAV	CCTTC	4 cut(s)	4, 165, 331, 392
HpyCH4V	TGCA	2 cut(s)	19, 209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 175, 380
HpyF3I	CTNAG	2 cut(s)	78, 150
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	3 cut(s)	372, 413, 415
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
LpnPI	CCDG	5 cut(s)	65, 82, 101, 264, 403
Lsp1109I	GCAGC	1 cut(s)	414
MaeI	CTAG	2 cut(s)	351, 384
MaeIII	GTNAC	2 cut(s)	259, 434
MboII	GAAGA	3 cut(s)	28, 121, 205
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	7 cut(s)	22, 44, 139, 217, 233, 267, 304
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	3 cut(s)	156, 279, 297
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	3 cut(s)	74, 175, 380
NaeI	GCCGGC	1 cut(s)	70
NgoMIV	GCCGGC	1 cut(s)	68
NheI	GCTAGC	1 cut(s)	383
NlaIII	CATG	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	259
PauI	GCGCGC	1 cut(s)	413
PdiI	GCCGGC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	404
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	31
PspPPI	RGGWCCY	1 cut(s)	31
PteI	GCGCGC	1 cut(s)	413
SaqAI	TTAA	3 cut(s)	156, 279, 297
SatI	GCNGC	1 cut(s)	403
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	92
SetI	ASST	5 cut(s)	36, 96, 266, 303, 407
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	2 cut(s)	351, 384
StyI	CCWWGG	1 cut(s)	439
TaqI	TCGA	2 cut(s)	222, 396
TaqII	GACCGA	1 cut(s)	76
TasI	AATT	1 cut(s)	243
Tru1I	TTAA	3 cut(s)	156, 279, 297
Tru9I	TTAA	3 cut(s)	156, 279, 297
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	402
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	4 cut(s)	28, 32, 122, 245
VpaK11BI	GGWCC	1 cut(s)	31
VspI	ATTAAT	1 cut(s)	279
XspI	CTAG	2 cut(s)	351, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.