Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000694.1

Orthogroup ID

OG0018648

Physical Location & Seq

Genomic Coordinates Forward (+)

63662 .. 64415

Gene Structure 754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000694.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgcccaagaagggtgtgcaatgggatgaggacctcttcattcatcttattgatagttatggaaaggcccgcattgttcaggagtcggctaagcttttcaatcagatgaaggaattgggtgtggagcgaagtctcaagtcgtatgaggctctgtttaagagcattttgcggagggggcggtatgtgatggggaagaggtactttaatcacatgttggctgagggaatagagcccactaggcatacttataacattatgatttggggtttcttcttgtccttgaggttggagactgcaaaacggtttttcgaggacatgaaaagtagaggaattaatcctgttgttgtcacctataacacgatgattaatgggtacaggctttgcgatgcggagaaaaaggatgaagctcagactatattgaatgagatggctgcacattctctgacggaggctggtcattacggtatccttattgagaacttctgcaaggctagggtgtatgatcgagcagttcacttgcttgataaggatgaagccccagagttctatggaattctgcaagccatgctggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

191

Amino Acids

22.28

Weight (kDa)

7.77

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018648)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001159
rosa_multiflora	Rmu_sc0000694.1_g000012 Rmu_sc0032479.1_g000003
rosa_roxburghii	Rroxscaffold_3G00226020
rosa_samantha	Rh5BG354100 Rh5DG369600 Rh7AG445400 Rh7BG417700 Rh7DG434200
rosa_wichuraiana	Rw7G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AciI	CCGC	4 cut(s)	70, 169, 178, 389
AcsI	RAATTY	1 cut(s)	552
AfaI	GTAC	2 cut(s)	200, 374
AfiI	CCNNNNNNNGG	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	100, 421
AluBI	AGCT	2 cut(s)	94, 407
AluI	AGCT	2 cut(s)	94, 407
Alw26I	GTCTC	2 cut(s)	137, 284
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	552
AseI	ATTAAT	2 cut(s)	333, 366
AspS9I	GGNCC	2 cut(s)	31, 67
AsuHPI	GGTGA	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	234
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	181, 421
BciVI	GTATCC	1 cut(s)	476
BcoDI	GTCTC	2 cut(s)	137, 284
BfaI	CTAG	2 cut(s)	237, 492
BfuI	GTATCC	1 cut(s)	476
BglI	GCCNNNNNGGC	1 cut(s)	238
BisI	GCNGC	1 cut(s)	432
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	31, 67
BmsI	GCATC	1 cut(s)	376
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	119, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	26
BseGI	GGATG	3 cut(s)	31, 406, 535
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	210, 422
BseXI	GCAGC	1 cut(s)	418
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	2 cut(s)	137, 284
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	502
Bsp1720I	GCTNAGC	1 cut(s)	90
BspACI	CCGC	4 cut(s)	70, 169, 178, 389
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	211, 421
BsrDI	GCAATG	1 cut(s)	26
BssMI	GATC	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	303, 464
Bst6I	CTCTTC	2 cut(s)	41, 188
BstAPI	GCANNNNNTGC	1 cut(s)	565
BstC8I	GCNNGC	2 cut(s)	70, 561
BstDEI	CTNAG	3 cut(s)	90, 219, 408
BstF5I	GGATG	3 cut(s)	31, 406, 535
BstKTI	GATC	1 cut(s)	505
BstMAI	GTCTC	2 cut(s)	137, 284
BstMBI	GATC	1 cut(s)	502
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 238, 565
BstNSI	RCATGY	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	68
BtgZI	GCGATG	1 cut(s)	399
BtsCI	GGATG	3 cut(s)	31, 406, 535
Cac8I	GCNNGC	2 cut(s)	70, 561
Cfr13I	GGNCC	2 cut(s)	31, 67
Csp6I	GTAC	2 cut(s)	199, 373
CviAII	CATG	3 cut(s)	211, 316, 565
CviQI	GTAC	2 cut(s)	199, 373
DdeI	CTNAG	3 cut(s)	90, 219, 408
DpnI	GATC	1 cut(s)	504
DpnII	GATC	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	41, 188
EarI	CTCTTC	2 cut(s)	41, 188
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	3 cut(s)	214, 319, 568
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	3 cut(s)	210, 315, 564
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	3 cut(s)	38, 413, 542
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	237, 492
GluI	GCNGC	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	214, 319, 568
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	83
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	105, 411, 444
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	2 cut(s)	4, 103
HpyCH4III	ACNGT	2 cut(s)	303, 464
HpyCH4V	TGCA	5 cut(s)	19, 296, 434, 486, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 238, 565
HpyF3I	CTNAG	3 cut(s)	90, 219, 408
Hsp92II	CATG	3 cut(s)	214, 319, 568
Kzo9I	GATC	1 cut(s)	502
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	6 cut(s)	65, 351, 361, 438, 552, 554
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	237, 492
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	1 cut(s)	504
MboI	GATC	1 cut(s)	502
MboII	GAAGA	3 cut(s)	28, 205, 262
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	3 cut(s)	113, 330, 552
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	267
MseI	TTAA	4 cut(s)	156, 204, 333, 366
MwoI	GCNNNNNNNGC	3 cut(s)	175, 238, 565
NdeII	GATC	1 cut(s)	502
NlaIII	CATG	3 cut(s)	214, 319, 568
NmuCI	GTSAC	1 cut(s)	346
NspI	RCATGY	1 cut(s)	214
PciI	ACATGT	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	433
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	31
PscI	ACATGT	1 cut(s)	210
PshBI	ATTAAT	2 cut(s)	333, 366
PsiI	TTATAA	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	31, 67
PspPPI	RGGWCCY	1 cut(s)	31
RsaI	GTAC	2 cut(s)	200, 374
RsaNI	GTAC	2 cut(s)	199, 373
SaqAI	TTAA	4 cut(s)	156, 204, 333, 366
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	1 cut(s)	502
Sau96I	GGNCC	2 cut(s)	31, 67
SchI	GAGTC	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	6 cut(s)	36, 96, 200, 287, 353, 409
SfaNI	GCATC	1 cut(s)	376
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	134, 280
SmoI	CTYRAG	2 cut(s)	134, 280
Sse9I	AATT	3 cut(s)	113, 330, 552
SsiI	CCGC	4 cut(s)	70, 169, 178, 389
SspMI	CTAG	2 cut(s)	237, 492
TaaI	ACNGT	2 cut(s)	303, 464
TaqI	TCGA	2 cut(s)	309, 505
TasI	AATT	3 cut(s)	113, 330, 552
Tru1I	TTAA	4 cut(s)	156, 204, 333, 366
Tru9I	TTAA	4 cut(s)	156, 204, 333, 366
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	6 cut(s)	28, 32, 122, 332, 417, 546
TspGWI	ACGGA	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	31
VspI	ATTAAT	2 cut(s)	333, 366
XapI	RAATTY	1 cut(s)	552
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	2 cut(s)	237, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.