Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0018648

Physical Location & Seq

Genomic Coordinates Forward (+)

56104221 .. 56104933

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTTATTGATAGTTATGGTATGGCCGGCATTGTTCAGGAGTCTGACAAGCTTCTCAATCAAATGAAGAAACTGGGTGTGAAGCAAAGTCTCAAGTCGTATGAGGCTCTGTTCAAGAGGATTTTGCAAAGGGGGCAGTATATGACGGGGAAGAGATTGGAGACTGCAAAACGATTTTTTGAGGACATGAAATGTAGAGGAATTAGTCCTGATGCTGTCACCTATAACACGGGGATTAATGGGTATAATCAGTTTAAGCTGATGGATGAGGGCGAGCAGTTGTTTGTAGAGTTGAAGGGAGACATATCTAGGGGCGTCATTTGGGCATGCGCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

126

Amino Acids

14.46

Weight (kDa)

8.85

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	61 - 96	1.1e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018648)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001159
rosa_multiflora	Rmu_sc0000694.1_g000012 Rmu_sc0032479.1_g000003
rosa_roxburghii	Rroxscaffold_3G00226020
rosa_samantha	Rh5BG354100 Rh5DG369600 Rh7AG445400 Rh7BG417700 Rh7DG434200
rosa_wichuraiana	Rw7G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	157, 337
AluBI	AGCT	2 cut(s)	94, 301
AluI	AGCT	2 cut(s)	94, 301
Alw26I	GTCTC	3 cut(s)	137, 197, 336
AoxI	GGCC	1 cut(s)	66
AseI	ATTAAT	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	31
BccI	CCATC	1 cut(s)	298
BcoDI	GTCTC	3 cut(s)	137, 197, 336
BfaI	CTAG	2 cut(s)	351, 379
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	31, 313
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMI	GCAATG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	3 cut(s)	137, 197, 336
BsnI	GGCC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	68
BssNI	GRCGYC	1 cut(s)	357
Bst6I	CTCTTC	2 cut(s)	41, 188
BstACI	GRCGYC	1 cut(s)	357
BstC8I	GCNNGC	3 cut(s)	70, 317, 370
BstF5I	GGATG	2 cut(s)	31, 313
BstHHI	GCGC	1 cut(s)	374
BstMAI	GTCTC	3 cut(s)	137, 197, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	31, 313
Cac8I	GCNNGC	3 cut(s)	70, 317, 370
CfoI	GCGC	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	31
CseI	GACGC	1 cut(s)	346
CviAII	CATG	2 cut(s)	229, 369
CviJI	RGCY	4 cut(s)	68, 94, 149, 301
CviKI_1	RGCY	4 cut(s)	68, 94, 149, 301
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	41, 188
EarI	CTCTTC	2 cut(s)	41, 188
Eco47I	GGWCC	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	31
FaeI	CATG	2 cut(s)	232, 372
FatI	CATG	2 cut(s)	228, 368
FokI	GGATG	2 cut(s)	38, 320
FspBI	CTAG	2 cut(s)	351, 379
GlaI	GCGC	1 cut(s)	373
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	374
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	232, 372
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	3 cut(s)	80, 157, 251
HpyAV	CCTTC	2 cut(s)	4, 331
HpyCH4V	TGCA	3 cut(s)	19, 169, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	232, 372
HspAI	GCGC	1 cut(s)	372
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
LpnPI	CCDG	4 cut(s)	65, 82, 101, 264
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	351, 379
MaeIII	GTNAC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	28, 121, 205
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	7 cut(s)	22, 44, 139, 153, 217, 233, 304
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	2 cut(s)	279, 297
MspI	CCGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	175
NaeI	GCCGGC	1 cut(s)	70
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	2 cut(s)	232, 372
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	372
PaeI	GCATGC	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	31
PspPPI	RGGWCCY	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	279, 297
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	92
SetI	ASST	4 cut(s)	36, 96, 266, 303
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	372
Sse9I	AATT	1 cut(s)	243
SspMI	CTAG	2 cut(s)	351, 379
TasI	AATT	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	279, 297
Tru9I	TTAA	2 cut(s)	279, 297
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	4 cut(s)	28, 32, 122, 245
VpaK11BI	GGWCC	1 cut(s)	31
VspI	ATTAAT	1 cut(s)	279
XceI	RCATGY	1 cut(s)	372
XspI	CTAG	2 cut(s)	351, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.