Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032479.1

Orthogroup ID

OG0018648

Physical Location & Seq

Genomic Coordinates Forward (+)

11345 .. 12005

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032479.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggccggtgagtctgacaagcttctcaatcaaatgaagaaactgggtgtgaagcaaagtctcaagtcgtatgaggctctgttcaagaggattttgcaaagggggcagtatatgacggggaagagattggagactgcaaaacgattttttgaggacatgaaatgtagaggaattagtcctgatgctgtcacctataatacggggattaatgggtataatcagtttaagctgatggatgagggcgagcagtttagcgagtctaacctggtgctgcaagctagtgaggccagagaggcttgcacggtcttgtacgcgcagcggtgcgtgcgagctggtgtgctcctgccaacaggagaaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

120

Amino Acids

13.5

Weight (kDa)

9.03

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018648)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001159
rosa_multiflora	Rmu_sc0000694.1_g000012 Rmu_sc0032479.1_g000003
rosa_roxburghii	Rroxscaffold_3G00226020
rosa_samantha	Rh5BG354100 Rh5DG369600 Rh7AG445400 Rh7BG417700 Rh7DG434200
rosa_wichuraiana	Rw7G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	314
AciI	CCGC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	4 cut(s)	22, 229, 278, 332
AluI	AGCT	4 cut(s)	22, 229, 278, 332
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	2 cut(s)	65, 125
AoxI	GGCC	2 cut(s)	3, 285
ApeKI	GCWGC	2 cut(s)	271, 316
AseI	ATTAAT	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	20, 181
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	258, 328
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	65, 125
BfaI	CTAG	2 cut(s)	279, 361
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	2 cut(s)	272, 317
BlsI	GCNGC	2 cut(s)	273, 318
Bme1390I	CCNGG	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	266
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	47
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	258, 328
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	2 cut(s)	5, 287
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	2 cut(s)	65, 125
BsnI	GGCC	2 cut(s)	5, 287
Bsp1286I	GDGCHC	1 cut(s)	342
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	2 cut(s)	5, 287
BspFNI	CGCG	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	5 cut(s)	245, 276, 298, 326, 330
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	316
BstMAI	GTCTC	2 cut(s)	65, 125
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 284, 293, 325
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	258, 328
BsuRI	GGCC	2 cut(s)	5, 287
BtsCI	GGATG	1 cut(s)	241
Cac8I	GCNNGC	5 cut(s)	245, 276, 298, 326, 330
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	5
CsiI	ACCWGGT	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	9 cut(s)	5, 22, 77, 229, 278, 287, 296, 332, 360
CviKI_1	RGCY	9 cut(s)	5, 22, 77, 229, 278, 287, 296, 332, 360
CviQI	GTAC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	160
FaiI	YATR	6 cut(s)	72, 111, 113, 158, 195, 216
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	272, 317
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	272, 317
FspBI	CTAG	2 cut(s)	279, 361
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	2 cut(s)	272, 317
HaeIII	GGCC	2 cut(s)	5, 287
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	11, 257
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	2 cut(s)	20, 181
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	85, 179
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	4 cut(s)	97, 137, 274, 300
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 284, 293, 325
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	314
LmnI	GCTCC	1 cut(s)	345
LpnPI	CCDG	9 cut(s)	19, 29, 192, 251, 278, 301, 318, 336, 356
Lsp1109I	GCAGC	2 cut(s)	258, 328
LweI	GCATC	1 cut(s)	172
MabI	ACCWGGT	1 cut(s)	264
MaeI	CTAG	2 cut(s)	279, 361
MaeIII	GTNAC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	49, 133
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	20, 266
MnlI	CCTC	7 cut(s)	67, 81, 145, 161, 232, 277, 286
MseI	TTAA	2 cut(s)	207, 225
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	4 cut(s)	103, 284, 293, 325
NlaIII	CATG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	273, 318
PleI	GAGTC	2 cut(s)	19, 265
PpsI	GAGTC	2 cut(s)	19, 265
PshBI	ATTAAT	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	207, 225
SatI	GCNGC	2 cut(s)	272, 317
SchI	GAGTC	2 cut(s)	20, 266
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	6 cut(s)	24, 194, 231, 267, 280, 334
SexAI	ACCWGGT	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	2 cut(s)	279, 361
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	304
TasI	AATT	1 cut(s)	171
Tru1I	TTAA	2 cut(s)	207, 225
Tru9I	TTAA	2 cut(s)	207, 225
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	271, 316
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	50, 173
VspI	ATTAAT	1 cut(s)	207
XspI	CTAG	2 cut(s)	279, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.