RLG00000001490

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015639
Physical Location & Seq
Forward (+)
16309575 .. 16312417
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001490

Sequence Viewer

Length: 1377 bp
ATGGAGGTGACTATTGTTTCCAGAGATACCATCAAACCAGCGGTGACTTCCTCTTCACTTCATCGCCATCAAAAACCTTACAAACTTTGCATCATCGATCAACTCATTCCAGCAACTTATACCCCAATGGTTTTCTTCTACCCCATCACTGACCCCAATTTCAATCTCCCGCAAACCCTAGCCAACTTGAAAAACTCACTCTCACGAACCCTCACTCTGTACTACCCATTTTCCGGGAGGACCCAAAACAACCTCTACGTAAATGACTTTGATGCGGGTGCCCCCTACCTCGAGGCCCAAGTCAAATGTTCCATGTTCGAGTTTCTTGAGCTAAAAGAAATCGAGTTGCTCAACCGGTTCATTCCGTTGCCTCCATTTCGCAAGGAAACTGAAGATGATCATGATTTGCTACCCTTGATAGCATTTCAAGTCAGTGTTTTTGCTTGCGGTGGGATATCAATAGGGGTCTCTCTGTCTCACAAGATCTTTGACGGGGTAACTGCAGATACTTTCCTCAAGTCTTGGGCTGCTATTTGTCGGGGGGATCATGATGAGAAAACCATGACAACACTACACCTTAATCTCTCCCAAGCGTCGTTAACTTTTCCGGCAAGAGATGATTTACCACAAAAATATATAGCTTTCGTGGAGAGCCTGTGGTTCCAGGAGAAAAACTATGTTACAAGGAGATTTGTGTTTGATGCTGAAGCCATAGCCACACTAAATGACCGAGCAAAGAGTGAGCTTGTGCCCAATCCAACACGTGTTGAGACACTGACTTGTTTTCTATGGAAACATGCAATATCTGCTTCTAGACTTGTTTCGACAGGTAATTCACAACGAGCATCCATAGTAGCACATGCAGTGAACTTGAGGAGGCGACTGAATCCCCCAATGGCAGATAATATCATTGGAAATATAATTTGGTTTGCCACAGCACTCAACAACAATACCGATGAGGCAGAGACTACTCAGTTGTGTGATTTGTTGAAGTTATTACGTATGTCTTTCGAAGGATTTGACAATGATTATTTGCAGACATTTTGTGGAGAAGAGGGACTTGGAGCCTTTTCTAAATACTTCAATCAGTTACAGGAAGTCATGCATTCCTTAGAGTCACCACCAGAAACTTATGGTTTCACTAGCTGGACTCACATTCTTAGTGAAATTGACTTTGGATGGGGAAGGCCAGTTTGGATTGGGGCCGGAGGAAGTGTCGGACCTGCCTTTAGGAACTTCATAGTGCTTGTTGAAACACAGTGGGGTGATGGCATTGAAGCATGGGTGACTTTGGATAAAAAGCAAATGGCTATAATGGAGAAAGATCCTCAGTTTTTAGCATTTGCTTCTCCAAACCCGCGTATTTCAGGCATATGA

Protein Analysis

459

Amino Acids

51.74

Weight (kDa)

5.45

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 445 1e-72 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 290
Acc36I ACCTGC 1 cut(s) 1231
AccB1I GGYRCC 1 cut(s) 278
AccII CGCG 1 cut(s) 1360
AciI CCGC 5 cut(s) 41, 170, 275, 447, 1358
AclWI GGATC 2 cut(s) 552, 1319
AcuI CTGAAG 2 cut(s) 411, 726
AcvI CACGTG 1 cut(s) 764
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 233
AflIII ACRYGT 2 cut(s) 761, 763
AgeI ACCGGT 1 cut(s) 354
AgsI TTSAA 7 cut(s) 163, 190, 428, 991, 1084, 1253, 1277
AjnI CCWGG 1 cut(s) 663
AjuI GAANNNNNNNTTGG 8 cut(s) 907, 939, 1044, 1076, 1158, 1177, 1190, 1209
AluBI AGCT 4 cut(s) 331, 641, 745, 1146
AluI AGCT 4 cut(s) 331, 641, 745, 1146
Alw26I GTCTC 4 cut(s) 472, 480, 764, 959
AlwI GGATC 2 cut(s) 552, 1319
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 3 cut(s) 294, 1187, 1203
ApeKI GCWGC 1 cut(s) 527
AsiGI ACCGGT 1 cut(s) 354
AspS9I GGNCC 4 cut(s) 240, 295, 1203, 1220
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 5 cut(s) 19, 55, 1110, 1277, 1297
AsuII TTCGAA 1 cut(s) 1011
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 2 cut(s) 240, 1220
BaeGI GKGCMC 2 cut(s) 283, 753
BanI GGYRCC 1 cut(s) 278
BbrPI CACGTG 1 cut(s) 764
BbvI GCAGC 1 cut(s) 514
BccI CCATC 5 cut(s) 38, 75, 152, 1173, 1262
BciT130I CCWGG 1 cut(s) 665
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 235
BcoDI GTCTC 4 cut(s) 472, 480, 764, 959
BfaI CTAG 3 cut(s) 179, 813, 1143
BfmI CTRYAG 1 cut(s) 501
BfuAI ACCTGC 1 cut(s) 1231
BglII AGATCT 1 cut(s) 483
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
Bme1390I CCNGG 2 cut(s) 235, 665
Bme18I GGWCC 2 cut(s) 240, 1220
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 4 cut(s) 240, 295, 1203, 1220
BmiI GGNNCC 5 cut(s) 242, 280, 662, 1066, 1204
BmrFI CCNGG 2 cut(s) 235, 665
BmsI GCATC 4 cut(s) 99, 262, 691, 854
Bpu14I TTCGAA 1 cut(s) 1011
BpuEI CTTGAG 3 cut(s) 347, 500, 892
BpuMI CCSGG 1 cut(s) 235
Bsa29I ATCGAT 1 cut(s) 96
BsaAI YACGTR 3 cut(s) 259, 764, 1001
BsaI GGTCTC 1 cut(s) 472
BsaWI WCCGGW 1 cut(s) 354
BsaXI ACNNNNNCTCC 4 cut(s) 641, 671, 1200, 1230
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 1190
BseBI CCWGG 1 cut(s) 665
BseCI ATCGAT 1 cut(s) 96
BseGI GGATG 2 cut(s) 845, 1184
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 986, 1343
BseNI ACTGG 1 cut(s) 1190
BseRI GAGGAG 1 cut(s) 889
BseSI GKGCMC 2 cut(s) 283, 753
BseXI GCAGC 1 cut(s) 514
Bsh1236I CGCG 1 cut(s) 1360
BshFI GGCC 3 cut(s) 296, 1189, 1205
BshNI GGYRCC 1 cut(s) 278
BshTI ACCGGT 1 cut(s) 354
BshVI ATCGAT 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 4 cut(s) 234, 355, 608, 1206
BslFI GGGAC 1 cut(s) 1071
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 4 cut(s) 472, 480, 764, 959
BsmFI GGGAC 1 cut(s) 1071
BsmI GAATGC 1 cut(s) 1105
BsnI GGCC 3 cut(s) 296, 1189, 1205
Bso31I GGTCTC 1 cut(s) 472
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 1011
Bsp1286I GDGCHC 2 cut(s) 283, 753
Bsp143I GATC 5 cut(s) 97, 397, 483, 544, 1324
BspACI CCGC 5 cut(s) 41, 170, 275, 447, 1358
BspANI GGCC 3 cut(s) 296, 1189, 1205
BspCNI CTCAG 2 cut(s) 985, 1342
BspDI ATCGAT 1 cut(s) 96
BspFNI CGCG 1 cut(s) 1360
BspHI TCATGA 2 cut(s) 400, 547
BspLI GGNNCC 5 cut(s) 242, 280, 662, 1066, 1204
BspMAI CTGCAG 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 1231
BspPI GGATC 2 cut(s) 552, 1319
BspT104I TTCGAA 1 cut(s) 1011
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 472
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 1 cut(s) 1190
BssAI RCCGGY 1 cut(s) 354
BssMI GATC 5 cut(s) 97, 397, 483, 544, 1324
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 1 cut(s) 1260
Bst6I CTCTTC 2 cut(s) 58, 1047
BstAPI GCANNNNNTGC 1 cut(s) 806
BstBAI YACGTR 3 cut(s) 259, 764, 1001
BstBI TTCGAA 1 cut(s) 1011
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 4 cut(s) 972, 1111, 1160, 1329
BstF5I GGATG 2 cut(s) 845, 1184
BstFNI CGCG 1 cut(s) 1360
BstKTI GATC 5 cut(s) 100, 400, 486, 547, 1327
BstMAI GTCTC 4 cut(s) 472, 480, 764, 959
BstMBI GATC 5 cut(s) 97, 397, 483, 544, 1324
BstMWI GCNNNNNNNGC 1 cut(s) 806
BstNI CCWGG 1 cut(s) 665
BstNSI RCATGY 2 cut(s) 800, 863
BstSCI CCNGG 2 cut(s) 233, 663
BstSFI CTRYAG 1 cut(s) 501
BstSLI GKGCMC 2 cut(s) 283, 753
BstSNI TACGTA 2 cut(s) 259, 1001
BstUI CGCG 1 cut(s) 1360
BstV1I GCAGC 1 cut(s) 514
BstX2I RGATCY 2 cut(s) 483, 1324
BstYI RGATCY 2 cut(s) 483, 1324
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 3 cut(s) 296, 1189, 1205
BsuTUI ATCGAT 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 845, 1184
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 5 cut(s) 147, 439, 773, 870, 1265
BveI ACCTGC 1 cut(s) 1231
Cac8I GCNNGC 1 cut(s) 445
CciI TCATGA 2 cut(s) 400, 547
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 4 cut(s) 240, 295, 1203, 1220
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 1 cut(s) 582
Csp6I GTAC 1 cut(s) 220
CspAI ACCGGT 1 cut(s) 354
CviAII CATG 8 cut(s) 313, 401, 548, 562, 797, 860, 1102, 1281
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 4 cut(s) 972, 1111, 1160, 1329
DpnI GATC 5 cut(s) 99, 399, 485, 546, 1326
DpnII GATC 5 cut(s) 97, 397, 483, 544, 1324
Eam1104I CTCTTC 2 cut(s) 58, 1047
EarI CTCTTC 2 cut(s) 58, 1047
Eco105I TACGTA 2 cut(s) 259, 1001
Eco31I GGTCTC 1 cut(s) 472
Eco32I GATATC 1 cut(s) 456
Eco47I GGWCC 2 cut(s) 240, 1220
Eco57I CTGAAG 2 cut(s) 411, 726
Eco72I CACGTG 1 cut(s) 764
Eco88I CYCGRG 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 663
EcoRV GATATC 1 cut(s) 456
EcoT22I ATGCAT 1 cut(s) 1107
FaeI CATG 8 cut(s) 316, 404, 551, 565, 800, 863, 1105, 1284
FalI AAGNNNNNCTT 2 cut(s) 1044, 1076
FaqI GGGAC 1 cut(s) 1071
FatI CATG 8 cut(s) 312, 400, 547, 561, 796, 859, 1101, 1280
FauI CCCGC 3 cut(s) 177, 268, 1365
FauNDI CATATG 1 cut(s) 1373
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 528
FokI GGATG 2 cut(s) 832, 1191
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 3 cut(s) 179, 813, 1143
GluI GCNGC 1 cut(s) 528
HaeIII GGCC 3 cut(s) 296, 1189, 1205
HapII CCGG 4 cut(s) 234, 355, 608, 1206
HgaI GACGC 1 cut(s) 582
Hin1II CATG 8 cut(s) 316, 404, 551, 565, 800, 863, 1105, 1284
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HinfI GANTC 3 cut(s) 886, 1115, 1150
HpaI GTTAAC 1 cut(s) 600
HpaII CCGG 4 cut(s) 234, 355, 608, 1206
HphI GGTGA 5 cut(s) 19, 55, 1110, 1277, 1297
Hpy166II GTNNAC 2 cut(s) 600, 868
Hpy188I TCNGA 1 cut(s) 1220
Hpy188III TCNNGA 6 cut(s) 21, 204, 326, 401, 548, 813
Hpy8I GTNNAC 2 cut(s) 600, 868
Hpy99I CGWCG 1 cut(s) 598
HpyAV CCTTC 2 cut(s) 1007, 1179
HpyCH4III ACNGT 1 cut(s) 1260
HpyCH4IV ACGT 3 cut(s) 258, 763, 1000
HpyCH4V TGCA 6 cut(s) 90, 503, 800, 863, 1036, 1105
HpyF10VI GCNNNNNNNGC 1 cut(s) 806
HpyF3I CTNAG 4 cut(s) 972, 1111, 1160, 1329
HpySE526I ACGT 3 cut(s) 258, 763, 1000
Hsp92II CATG 8 cut(s) 316, 404, 551, 565, 800, 863, 1105, 1284
Ksp22I TGATCA 1 cut(s) 397
KspAI GTTAAC 1 cut(s) 600
Kzo9I GATC 5 cut(s) 97, 397, 483, 544, 1324
LmnI GCTCC 1 cut(s) 1064
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 4 cut(s) 99, 262, 691, 854
MaeI CTAG 3 cut(s) 179, 813, 1143
MaeII ACGT 3 cut(s) 258, 763, 1000
MaeIII GTNAC 7 cut(s) 7, 43, 496, 679, 1089, 1116, 1285
MalI GATC 5 cut(s) 99, 399, 485, 546, 1326
MboI GATC 5 cut(s) 97, 397, 483, 544, 1324
MboII GAAGA 4 cut(s) 45, 127, 404, 1064
MflI RGATCY 2 cut(s) 483, 1324
MhlI GDGCHC 2 cut(s) 283, 753
MluCI AATT 4 cut(s) 157, 832, 921, 1167
MlyI GAGTC 2 cut(s) 1124, 1144
MmeI TCCRAC 2 cut(s) 782, 1198
Mph1103I ATGCAT 1 cut(s) 1107
MseI TTAA 2 cut(s) 579, 599
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 4 cut(s) 234, 355, 608, 1206
MspR9I CCNGG 2 cut(s) 235, 665
Mva1269I GAATGC 1 cut(s) 1105
MvaI CCWGG 1 cut(s) 665
MvnI CGCG 1 cut(s) 1360
MwoI GCNNNNNNNGC 1 cut(s) 806
NciI CCSGG 1 cut(s) 235
NdeI CATATG 1 cut(s) 1373
NdeII GATC 5 cut(s) 97, 397, 483, 544, 1324
NlaIII CATG 8 cut(s) 316, 404, 551, 565, 800, 863, 1105, 1284
NlaIV GGNNCC 5 cut(s) 242, 280, 662, 1066, 1204
NmuCI GTSAC 4 cut(s) 7, 43, 1116, 1285
NsiI ATGCAT 1 cut(s) 1107
NspI RCATGY 2 cut(s) 800, 863
NspV TTCGAA 1 cut(s) 1011
PaeR7I CTCGAG 1 cut(s) 290
PagI TCATGA 2 cut(s) 400, 547
PctI GAATGC 1 cut(s) 1105
PfeI GAWTC 1 cut(s) 886
PfoI TCCNGGA 2 cut(s) 233, 663
PinAI ACCGGT 1 cut(s) 354
PkrI GCNGC 1 cut(s) 529
PleI GAGTC 2 cut(s) 1123, 1144
PmaCI CACGTG 1 cut(s) 764
PmlI CACGTG 1 cut(s) 764
PpsI GAGTC 2 cut(s) 1123, 1144
Ppu21I YACGTR 3 cut(s) 259, 764, 1001
PpuMI RGGWCCY 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 663
PspCI CACGTG 1 cut(s) 764
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 5 cut(s) 242, 280, 662, 1066, 1204
PspPI GGNCC 4 cut(s) 240, 295, 1203, 1220
PspPPI RGGWCCY 1 cut(s) 240
PspXI VCTCGAGB 1 cut(s) 290
PstI CTGCAG 1 cut(s) 505
PsuI RGATCY 2 cut(s) 483, 1324
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SaqAI TTAA 2 cut(s) 579, 599
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 5 cut(s) 97, 397, 483, 544, 1324
Sau96I GGNCC 4 cut(s) 240, 295, 1203, 1220
SchI GAGTC 2 cut(s) 1124, 1144
ScrFI CCNGG 2 cut(s) 235, 665
SduI GDGCHC 2 cut(s) 283, 753
SfaNI GCATC 4 cut(s) 99, 262, 691, 854
SfcI CTRYAG 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 290
SfuI TTCGAA 1 cut(s) 1011
SinI GGWCC 2 cut(s) 240, 1220
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 4 cut(s) 290, 326, 515, 871
SmoI CTYRAG 4 cut(s) 290, 326, 515, 871
SnaBI TACGTA 2 cut(s) 259, 1001
Sse9I AATT 4 cut(s) 157, 832, 921, 1167
SsiI CCGC 5 cut(s) 41, 170, 275, 447, 1358
SspMI CTAG 3 cut(s) 179, 813, 1143
StyD4I CCNGG 2 cut(s) 233, 663
TaaI ACNGT 1 cut(s) 1260
TaiI ACGT 3 cut(s) 261, 766, 1003
TaqI TCGA 6 cut(s) 96, 291, 318, 342, 824, 1011
TaqII GACCGA 1 cut(s) 744
TasI AATT 4 cut(s) 157, 832, 921, 1167
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 1 cut(s) 886
Tru1I TTAA 2 cut(s) 579, 599
Tru9I TTAA 2 cut(s) 579, 599
TscAI CASTG 5 cut(s) 154, 439, 780, 870, 1265
TseFI GTSAC 4 cut(s) 7, 43, 1116, 1285
TseI GCWGC 1 cut(s) 527
Tsp45I GTSAC 4 cut(s) 7, 43, 1116, 1285
TspDTI ATGAA 3 cut(s) 50, 349, 1228
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 5 cut(s) 154, 439, 780, 870, 1265
VpaK11BI GGWCC 2 cut(s) 240, 1220
XbaI TCTAGA 1 cut(s) 812
XceI RCATGY 2 cut(s) 800, 863
XhoI CTCGAG 1 cut(s) 290
XspI CTAG 3 cut(s) 179, 813, 1143
Zsp2I ATGCAT 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.