Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011116.1

Orthogroup ID

OG0015639

Physical Location & Seq

Genomic Coordinates Reverse (-)

31308 .. 33445

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011116.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

atggaggtgactattgtttccagagataccatcaaaccagcagcgacttcctcttcacttcatcgccatcaaaaaccttacaaactttgcatcatcgatcaactcattccagcaacttataccccaatggttttcttctaccccatcactgaccccaatttcgatctcctacaaaccctagccaacttgaaaaactcactctcacgtaccctcactctgtactacccattttccgggaggacccaaaacaacctctacataaatgactttgatgcgggtgtcccctacctcgaggcccaagtcaaatgttccatgttcgagtttcttgagctaaaagaaatcgagttgctcaaccggttcattccgttgcctccatttcgcaaggaaactgaagatgatcatgatttgctacccttgatagcatttcaagtcagtgtttttgcttgcggtgggatatcaattggggtctctctatctcacaagatctttgacggggtaactgcagatactttcctcaagtcttgggctgctatttgtcgtggggatcatgatgagaaaaccatgacaacactacaccttaatctctcccaagcgtcgttaacttttcccgcaagagatgatttaccacaaaaatatacagctttcgtggagagcctgtggttccaggagaaaaactatgttacaaggagatttgtgtttgatgctaaagccatagccacactacgtgaccgagcaaagagtgagcttgtgcccaatccaacacgtgttgagacactgacttgttttctatggaaacatgcaatatctgcttctagacttgtttcgacaggtaattcacaacgagcatccctagtagcacatgcagtgaacttgaggaggcgactgaatcccccaatggcagataatatcattggaaatattatttggtttgccacagcactcaacaaccataccgatgaggcagagactactcagttgtgtgatttgttgaagttgttacgtatgtctttcgaaggatttgacactgattatttgcagacattttgcggagaagagggacttggagccttttctaaatacttcaatcagttactggaagtcatgcattccttagagtcaccaccagaaatttatgctttcactagctggactaacattcttagtgaaattgactttggatggggaaggccagtttggattggggccgggggaagtgtcggacctgcctttaggaacttcatagtgcttgttgaaacacagtggggtaatggcattgaagcatgggtgactttggataaaaagcaaatggctataatggagaaagatcctcagtttttagcatttgcttctccaaacccgcgtatttcaggcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

458

Amino Acids

51.79

Weight (kDa)

5.74

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32840
rosa_chinensis	RchiOBHm_Chr7g0230501 RchiOBHm_Chr7g0230711
rosa_laevigata	RLG00000001481 RLG00000001490
rosa_multiflora	Rmu_sc0007883.1_g000002 Rmu_sc0011116.1_g000007
rosa_roxburghii	Rroxscaffold_3G00230100
rosa_rugosa	Rorug07G0260900 Rorug07G0262000
rosa_samantha	Rh7AG412200 Rh7AG413900 Rh7BG390900 Rh7CG430000 Rh7DG409400
rosa_wichuraiana	Rw7G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	1231
AccII	CGCG	1 cut(s)	1360
AciI	CCGC	5 cut(s)	275, 447, 609, 1047, 1358
AclWI	GGATC	2 cut(s)	552, 1319
AcsI	RAATTY	1 cut(s)	1128
AcuI	CTGAAG	1 cut(s)	411
AcvI	CACGTG	1 cut(s)	764
AdeI	CACNNNGTG	1 cut(s)	725
AfaI	GTAC	2 cut(s)	208, 221
AfiI	CCNNNNNNNGG	1 cut(s)	233
AflIII	ACRYGT	2 cut(s)	761, 763
AgeI	ACCGGT	1 cut(s)	354
AgsI	TTSAA	6 cut(s)	190, 428, 991, 1084, 1253, 1277
AjnI	CCWGG	1 cut(s)	663
AjuI	GAANNNNNNNTTGG	8 cut(s)	907, 939, 1044, 1076, 1158, 1177, 1190, 1209
AluBI	AGCT	4 cut(s)	331, 641, 745, 1146
AluI	AGCT	4 cut(s)	331, 641, 745, 1146
Alw26I	GTCTC	3 cut(s)	472, 764, 959
AlwI	GGATC	2 cut(s)	552, 1319
AlwNI	CAGNNNCTG	1 cut(s)	1093
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	3 cut(s)	294, 1187, 1203
ApeKI	GCWGC	2 cut(s)	41, 527
ApoI	RAATTY	1 cut(s)	1128
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AsiGI	ACCGGT	1 cut(s)	354
AspS9I	GGNCC	4 cut(s)	240, 295, 1203, 1220
AsuC2I	CCSGG	2 cut(s)	235, 1207
AsuHPI	GGTGA	3 cut(s)	19, 1110, 1297
AsuII	TTCGAA	1 cut(s)	1011
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	2 cut(s)	240, 1220
BaeGI	GKGCMC	1 cut(s)	753
BbrPI	CACGTG	1 cut(s)	764
BbvI	GCAGC	2 cut(s)	53, 514
BccI	CCATC	4 cut(s)	38, 75, 152, 1173
BciT130I	CCWGG	1 cut(s)	665
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	2 cut(s)	235, 1207
BcoDI	GTCTC	3 cut(s)	472, 764, 959
BfaI	CTAG	4 cut(s)	179, 813, 851, 1143
BfmI	CTRYAG	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	1231
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	2 cut(s)	42, 528
BlsI	GCNGC	2 cut(s)	43, 529
Bme1390I	CCNGG	3 cut(s)	235, 665, 1207
Bme18I	GGWCC	2 cut(s)	240, 1220
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	4 cut(s)	240, 295, 1203, 1220
BmiI	GGNNCC	4 cut(s)	242, 662, 1066, 1204
BmrFI	CCNGG	3 cut(s)	235, 665, 1207
BmsI	GCATC	4 cut(s)	99, 262, 691, 854
Bpu14I	TTCGAA	1 cut(s)	1011
BpuEI	CTTGAG	3 cut(s)	347, 500, 892
BpuMI	CCSGG	2 cut(s)	235, 1207
Bsa29I	ATCGAT	1 cut(s)	96
BsaAI	YACGTR	4 cut(s)	206, 725, 764, 1001
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	1206
BsaWI	WCCGGW	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	1098, 1190
BseBI	CCWGG	1 cut(s)	665
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	1206
BseGI	GGATG	2 cut(s)	845, 1184
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	986, 1343
BseNI	ACTGG	2 cut(s)	1098, 1190
BseRI	GAGGAG	1 cut(s)	889
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	2 cut(s)	53, 514
Bsh1236I	CGCG	1 cut(s)	1360
BshFI	GGCC	3 cut(s)	296, 1189, 1205
BshTI	ACCGGT	1 cut(s)	354
BshVI	ATCGAT	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	3 cut(s)	234, 355, 1206
BslFI	GGGAC	2 cut(s)	266, 1071
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	3 cut(s)	472, 764, 959
BsmFI	GGGAC	2 cut(s)	266, 1071
BsmI	GAATGC	1 cut(s)	1105
BsnI	GGCC	3 cut(s)	296, 1189, 1205
Bso31I	GGTCTC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	1011
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	6 cut(s)	97, 163, 397, 483, 544, 1324
BspACI	CCGC	5 cut(s)	275, 447, 609, 1047, 1358
BspANI	GGCC	3 cut(s)	296, 1189, 1205
BspCNI	CTCAG	2 cut(s)	985, 1342
BspDI	ATCGAT	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	1360
BspHI	TCATGA	2 cut(s)	400, 547
BspLI	GGNNCC	4 cut(s)	242, 662, 1066, 1204
BspMAI	CTGCAG	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	1231
BspPI	GGATC	2 cut(s)	552, 1319
BspT104I	TTCGAA	1 cut(s)	1011
BspTNI	GGTCTC	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	1098, 1190
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	1206
BssMI	GATC	6 cut(s)	97, 163, 397, 483, 544, 1324
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	1 cut(s)	1260
Bst6I	CTCTTC	2 cut(s)	58, 1047
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstBAI	YACGTR	4 cut(s)	206, 725, 764, 1001
BstBI	TTCGAA	1 cut(s)	1011
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	4 cut(s)	972, 1111, 1160, 1329
BstF5I	GGATG	2 cut(s)	845, 1184
BstFNI	CGCG	1 cut(s)	1360
BstKTI	GATC	6 cut(s)	100, 166, 400, 486, 547, 1327
BstMAI	GTCTC	3 cut(s)	472, 764, 959
BstMBI	GATC	6 cut(s)	97, 163, 397, 483, 544, 1324
BstMWI	GCNNNNNNNGC	1 cut(s)	806
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	2 cut(s)	800, 863
BstSCI	CCNGG	3 cut(s)	233, 663, 1205
BstSFI	CTRYAG	1 cut(s)	501
BstSLI	GKGCMC	1 cut(s)	753
BstSNI	TACGTA	1 cut(s)	1001
BstUI	CGCG	1 cut(s)	1360
BstV1I	GCAGC	2 cut(s)	53, 514
BstX2I	RGATCY	2 cut(s)	483, 1324
BstYI	RGATCY	2 cut(s)	483, 1324
Bsu15I	ATCGAT	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	296, 1189, 1205
BsuTUI	ATCGAT	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	845, 1184
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	6 cut(s)	147, 439, 773, 870, 1023, 1265
BveI	ACCTGC	1 cut(s)	1231
Cac8I	GCNNGC	1 cut(s)	445
CaiI	CAGNNNCTG	1 cut(s)	1093
CciI	TCATGA	2 cut(s)	400, 547
Cfr10I	RCCGGY	1 cut(s)	354
Cfr13I	GGNCC	4 cut(s)	240, 295, 1203, 1220
ClaI	ATCGAT	1 cut(s)	96
CseI	GACGC	1 cut(s)	582
Csp6I	GTAC	2 cut(s)	207, 220
CspAI	ACCGGT	1 cut(s)	354
CviAII	CATG	8 cut(s)	313, 401, 548, 562, 797, 860, 1102, 1281
CviQI	GTAC	2 cut(s)	207, 220
DdeI	CTNAG	4 cut(s)	972, 1111, 1160, 1329
DpnI	GATC	6 cut(s)	99, 165, 399, 485, 546, 1326
DpnII	GATC	6 cut(s)	97, 163, 397, 483, 544, 1324
DraIII	CACNNNGTG	1 cut(s)	725
Eam1104I	CTCTTC	2 cut(s)	58, 1047
EarI	CTCTTC	2 cut(s)	58, 1047
Eco105I	TACGTA	1 cut(s)	1001
Eco31I	GGTCTC	1 cut(s)	472
Eco32I	GATATC	1 cut(s)	456
Eco47I	GGWCC	2 cut(s)	240, 1220
Eco57I	CTGAAG	1 cut(s)	411
Eco72I	CACGTG	1 cut(s)	764
Eco88I	CYCGRG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	663
EcoRV	GATATC	1 cut(s)	456
EcoT22I	ATGCAT	1 cut(s)	1107
FaeI	CATG	8 cut(s)	316, 404, 551, 565, 800, 863, 1105, 1284
FalI	AAGNNNNNCTT	2 cut(s)	1044, 1076
FaqI	GGGAC	2 cut(s)	266, 1071
FatI	CATG	8 cut(s)	312, 400, 547, 561, 796, 859, 1101, 1280
FauI	CCCGC	3 cut(s)	268, 616, 1365
FauNDI	CATATG	1 cut(s)	1373
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	42, 528
FokI	GGATG	2 cut(s)	832, 1191
Fsp4HI	GCNGC	2 cut(s)	42, 528
FspBI	CTAG	4 cut(s)	179, 813, 851, 1143
GluI	GCNGC	2 cut(s)	42, 528
HaeIII	GGCC	3 cut(s)	296, 1189, 1205
HapII	CCGG	3 cut(s)	234, 355, 1206
HgaI	GACGC	1 cut(s)	582
Hin1II	CATG	8 cut(s)	316, 404, 551, 565, 800, 863, 1105, 1284
HincII	GTYRAC	1 cut(s)	600
HindII	GTYRAC	1 cut(s)	600
HinfI	GANTC	2 cut(s)	886, 1115
HpaI	GTTAAC	1 cut(s)	600
HpaII	CCGG	3 cut(s)	234, 355, 1206
HphI	GGTGA	3 cut(s)	19, 1110, 1297
Hpy166II	GTNNAC	2 cut(s)	600, 868
Hpy188I	TCNGA	1 cut(s)	1220
Hpy188III	TCNNGA	5 cut(s)	21, 326, 401, 548, 813
Hpy8I	GTNNAC	2 cut(s)	600, 868
Hpy99I	CGWCG	1 cut(s)	598
HpyAV	CCTTC	2 cut(s)	1007, 1179
HpyCH4III	ACNGT	1 cut(s)	1260
HpyCH4IV	ACGT	4 cut(s)	205, 724, 763, 1000
HpyCH4V	TGCA	6 cut(s)	90, 503, 800, 863, 1036, 1105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	806
HpyF3I	CTNAG	4 cut(s)	972, 1111, 1160, 1329
HpySE526I	ACGT	4 cut(s)	205, 724, 763, 1000
Hsp92II	CATG	8 cut(s)	316, 404, 551, 565, 800, 863, 1105, 1284
Ksp22I	TGATCA	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	600
Kzo9I	GATC	6 cut(s)	97, 163, 397, 483, 544, 1324
LmnI	GCTCC	1 cut(s)	1064
Lsp1109I	GCAGC	2 cut(s)	53, 514
LweI	GCATC	4 cut(s)	99, 262, 691, 854
MaeI	CTAG	4 cut(s)	179, 813, 851, 1143
MaeII	ACGT	4 cut(s)	205, 724, 763, 1000
MaeIII	GTNAC	8 cut(s)	7, 496, 679, 725, 996, 1089, 1116, 1285
MalI	GATC	6 cut(s)	99, 165, 399, 485, 546, 1326
MboI	GATC	6 cut(s)	97, 163, 397, 483, 544, 1324
MboII	GAAGA	4 cut(s)	45, 127, 404, 1064
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	2 cut(s)	483, 1324
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	5 cut(s)	157, 459, 832, 1128, 1167
MlyI	GAGTC	1 cut(s)	1124
MmeI	TCCRAC	2 cut(s)	782, 1198
Mph1103I	ATGCAT	1 cut(s)	1107
MseI	TTAA	2 cut(s)	579, 599
MslI	CAYNNNNRTG	1 cut(s)	954
MspI	CCGG	3 cut(s)	234, 355, 1206
MspR9I	CCNGG	3 cut(s)	235, 665, 1207
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	1105
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	1360
MwoI	GCNNNNNNNGC	1 cut(s)	806
NciI	CCSGG	2 cut(s)	235, 1207
NdeI	CATATG	1 cut(s)	1373
NdeII	GATC	6 cut(s)	97, 163, 397, 483, 544, 1324
NlaIII	CATG	8 cut(s)	316, 404, 551, 565, 800, 863, 1105, 1284
NlaIV	GGNNCC	4 cut(s)	242, 662, 1066, 1204
NmuCI	GTSAC	4 cut(s)	7, 725, 1116, 1285
NsiI	ATGCAT	1 cut(s)	1107
NspI	RCATGY	2 cut(s)	800, 863
NspV	TTCGAA	1 cut(s)	1011
PaeR7I	CTCGAG	1 cut(s)	290
PagI	TCATGA	2 cut(s)	400, 547
PctI	GAATGC	1 cut(s)	1105
PfeI	GAWTC	1 cut(s)	886
PfoI	TCCNGGA	2 cut(s)	233, 663
PinAI	ACCGGT	1 cut(s)	354
PkrI	GCNGC	2 cut(s)	43, 529
PleI	GAGTC	1 cut(s)	1123
PmaCI	CACGTG	1 cut(s)	764
PmlI	CACGTG	1 cut(s)	764
PpsI	GAGTC	1 cut(s)	1123
Ppu21I	YACGTR	4 cut(s)	206, 725, 764, 1001
PpuMI	RGGWCCY	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	663
PspCI	CACGTG	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	4 cut(s)	242, 662, 1066, 1204
PspPI	GGNCC	4 cut(s)	240, 295, 1203, 1220
PspPPI	RGGWCCY	1 cut(s)	240
PspXI	VCTCGAGB	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	1093
PsuI	RGATCY	2 cut(s)	483, 1324
RsaI	GTAC	2 cut(s)	208, 221
RsaNI	GTAC	2 cut(s)	207, 220
RseI	CAYNNNNRTG	1 cut(s)	954
SaqAI	TTAA	2 cut(s)	579, 599
SatI	GCNGC	2 cut(s)	42, 528
Sau3AI	GATC	6 cut(s)	97, 163, 397, 483, 544, 1324
Sau96I	GGNCC	4 cut(s)	240, 295, 1203, 1220
SchI	GAGTC	1 cut(s)	1124
ScrFI	CCNGG	3 cut(s)	235, 665, 1207
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	4 cut(s)	99, 262, 691, 854
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	290
SfuI	TTCGAA	1 cut(s)	1011
SinI	GGWCC	2 cut(s)	240, 1220
SlaI	CTCGAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	954
SmlI	CTYRAG	4 cut(s)	290, 326, 515, 871
SmoI	CTYRAG	4 cut(s)	290, 326, 515, 871
SnaBI	TACGTA	1 cut(s)	1001
Sse9I	AATT	5 cut(s)	157, 459, 832, 1128, 1167
SsiI	CCGC	5 cut(s)	275, 447, 609, 1047, 1358
SspI	AATATT	1 cut(s)	919
SspMI	CTAG	4 cut(s)	179, 813, 851, 1143
StyD4I	CCNGG	3 cut(s)	233, 663, 1205
TaaI	ACNGT	1 cut(s)	1260
TaiI	ACGT	4 cut(s)	208, 727, 766, 1003
TaqI	TCGA	7 cut(s)	96, 162, 291, 318, 342, 824, 1011
TaqII	GACCGA	1 cut(s)	744
TasI	AATT	5 cut(s)	157, 459, 832, 1128, 1167
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	886
Tru1I	TTAA	2 cut(s)	579, 599
Tru9I	TTAA	2 cut(s)	579, 599
TscAI	CASTG	6 cut(s)	154, 439, 780, 870, 1030, 1265
TseFI	GTSAC	4 cut(s)	7, 725, 1116, 1285
TseI	GCWGC	2 cut(s)	41, 527
Tsp45I	GTSAC	4 cut(s)	7, 725, 1116, 1285
TspDTI	ATGAA	3 cut(s)	50, 349, 1228
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	6 cut(s)	154, 439, 780, 870, 1030, 1265
VpaK11BI	GGWCC	2 cut(s)	240, 1220
XapI	RAATTY	1 cut(s)	1128
XbaI	TCTAGA	1 cut(s)	812
XceI	RCATGY	2 cut(s)	800, 863
XhoI	CTCGAG	1 cut(s)	290
XspI	CTAG	4 cut(s)	179, 813, 851, 1143
Zsp2I	ATGCAT	1 cut(s)	1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.