Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007883.1

Orthogroup ID

OG0015639

Physical Location & Seq

Genomic Coordinates Reverse (-)

9565 .. 11340

Gene Structure 1776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007883.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

atggtggacatggaggtaaatatagtttgcagagatactatcaaacccgtagctgcttcctcgtcacttcatccccatcaaaaaccttgcaatctttgcatctttgatcagctcattccaacaacttatgtgcctatgcttttcttctaccccattattgaccccgacttcaacgtaccccagaccctagcccatttgaaaacctcactgtcacataccctcactcagtactacccattttccgggcggaccaaaaacaacctctatattcataattttgatgctggtgtcccctacgtagaggcccgagtcaaatgtcacatgtttgagttatttgagcttcaagaaatcgagttgctcaaccggtttgttccgttccatccatttcgcaaggaaactggatctcctgatctgttgcccttgatagcatttcaagtcagtgtttttgcttgtggtggcatatcaattggggtctctctgtctcacaagatctttgacgcacaaacggcaaatattttcctcaagtcttgggcttctgtttttcgtagggatcatgaagaagcaatacaatcaaaccttaatctctgccaagcgtcatcaacttttccagcaagtgataatttaccacaaaaatatcttagtttcatggagagcacgtggttcgaggaaaagaagtatgttacaaggagatttgtgtttgatgctaaagccatagccacattacgtggtacctcacgaagagcatccgtagtagcacatgcagtgaacttgaggcggcgactgaagccaccaatgccagatgacgccattggaaatctattttggtgggctactgcagtctacaacactactgataaggcagagactactgatgagttgtgtgatttgttgaagatgttacatgaatctctcaatggacttgaccatgatcattttttggatacattgcgcggagaagagggacgtcgagccatttttgaatacctcgatcaattgttggagggcatggattccttagatccaacaccagacatttatgcgttcactagctggattaatattctcgatgaagttgattttggatggggaaagccattttggattggggtcatgggaaaagttggacctgcctttaggaacctcactgtgttcgtcaaaacacaaagggataacggcattgaagcatgggtgaccatggatgaaaagcaaatgtctataatggaaaaagatcctcaatttttagcatttgcttctccaaacccgcgcattttaaatgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

426

Amino Acids

48.71

Weight (kDa)

5.73

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32840
rosa_chinensis	RchiOBHm_Chr7g0230501 RchiOBHm_Chr7g0230711
rosa_laevigata	RLG00000001481 RLG00000001490
rosa_multiflora	Rmu_sc0007883.1_g000002 Rmu_sc0011116.1_g000007
rosa_roxburghii	Rroxscaffold_3G00230100
rosa_rugosa	Rorug07G0260900 Rorug07G0262000
rosa_samantha	Rh7AG412200 Rh7AG413900 Rh7BG390900 Rh7CG430000 Rh7DG409400
rosa_wichuraiana	Rw7G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	967
Acc36I	ACCTGC	1 cut(s)	1135
Acc65I	GGTACC	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	840
AccII	CGCG	2 cut(s)	951, 1264
AciI	CCGC	4 cut(s)	247, 775, 951, 1262
AclWI	GGATC	4 cut(s)	409, 558, 1013, 1223
AcuI	CTGAAG	1 cut(s)	803
AcvI	CACGTG	1 cut(s)	657
AcyI	GRCGYC	2 cut(s)	804, 964
AfaI	GTAC	3 cut(s)	177, 230, 730
AfiI	CCNNNNNNNGG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	321
AgeI	ACCGGT	1 cut(s)	363
AgsI	TTSAA	7 cut(s)	172, 199, 344, 434, 892, 980, 1181
AjuI	GAANNNNNNNTTGG	6 cut(s)	805, 837, 1062, 1081, 1094, 1113
AluBI	AGCT	4 cut(s)	53, 112, 340, 1050
AluI	AGCT	4 cut(s)	53, 112, 340, 1050
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	3 cut(s)	478, 486, 857
AlwI	GGATC	4 cut(s)	409, 558, 1013, 1223
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	53
AseI	ATTAAT	1 cut(s)	1056
AsiGI	ACCGGT	1 cut(s)	363
Asp718I	GGTACC	1 cut(s)	728
AspLEI	GCGC	2 cut(s)	951, 1266
AspS9I	GGNCC	3 cut(s)	249, 304, 1124
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	1201
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	249, 1124
BanI	GGYRCC	1 cut(s)	728
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
BbrPI	CACGTG	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	656
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	3 cut(s)	84, 387, 1077
BceAI	ACGGC	2 cut(s)	522, 1189
BcgI	CGANNNNNNTGC	2 cut(s)	643, 677
BciVI	GTATCC	1 cut(s)	934
BclI	TGATCA	2 cut(s)	106, 928
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	3 cut(s)	478, 486, 857
BfaI	CTAG	2 cut(s)	188, 1047
BfmI	CTRYAG	1 cut(s)	834
BfuAI	ACCTGC	1 cut(s)	1135
BfuI	GTATCC	1 cut(s)	934
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	2 cut(s)	54, 776
BlsI	GCNGC	2 cut(s)	55, 777
BmcAI	AGTACT	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	244
Bme18I	GGWCC	2 cut(s)	249, 1124
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	3 cut(s)	249, 304, 1124
BmiI	GGNNCC	2 cut(s)	730, 1139
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	4 cut(s)	108, 271, 691, 752
BpuEI	CTTGAG	2 cut(s)	506, 790
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	3 cut(s)	298, 657, 725
BsaHI	GRCGYC	2 cut(s)	804, 964
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	1194
BsaWI	WCCGGW	1 cut(s)	363
BsaXI	ACNNNNNCTCC	4 cut(s)	388, 418, 641, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	944
BseDI	CCNNGG	1 cut(s)	1194
BseGI	GGATG	5 cut(s)	70, 379, 743, 1088, 1204
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	944
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	40
Bsh1236I	CGCG	2 cut(s)	951, 1264
BshFI	GGCC	1 cut(s)	305
BshNI	GGYRCC	1 cut(s)	728
BshTI	ACCGGT	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	656
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	2 cut(s)	243, 364
BslFI	GGGAC	2 cut(s)	275, 975
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	3 cut(s)	478, 486, 857
BsmFI	GGGAC	2 cut(s)	275, 975
BsnI	GGCC	1 cut(s)	305
Bso31I	GGTCTC	1 cut(s)	478
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp143I	GATC	9 cut(s)	106, 401, 409, 489, 550, 928, 988, 1018, 1228
Bsp19I	CCATGG	1 cut(s)	1194
BspACI	CCGC	4 cut(s)	247, 775, 951, 1262
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	2 cut(s)	951, 1264
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	730, 1139
BspMAI	CTGCAG	1 cut(s)	838
BspMI	ACCTGC	1 cut(s)	1135
BspPI	GGATC	4 cut(s)	409, 558, 1013, 1223
BspQI	GCTCTTC	1 cut(s)	733
BspT107I	GGYRCC	1 cut(s)	728
BspTNI	GGTCTC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	944
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	1194
BssMI	GATC	9 cut(s)	106, 401, 409, 489, 550, 928, 988, 1018, 1228
BssNI	GRCGYC	2 cut(s)	804, 964
BssT1I	CCWWGG	1 cut(s)	1194
Bst4CI	ACNGT	2 cut(s)	210, 1147
Bst6I	CTCTTC	2 cut(s)	733, 951
BstACI	GRCGYC	2 cut(s)	804, 964
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstBAI	YACGTR	3 cut(s)	298, 657, 725
BstDEI	CTNAG	3 cut(s)	225, 638, 1015
BstDSI	CCRYGG	1 cut(s)	1194
BstEII	GGTNACC	1 cut(s)	1189
BstF5I	GGATG	5 cut(s)	70, 379, 743, 1088, 1204
BstFNI	CGCG	2 cut(s)	951, 1264
BstHHI	GCGC	2 cut(s)	951, 1266
BstKTI	GATC	9 cut(s)	109, 404, 412, 492, 553, 931, 991, 1021, 1231
BstMAI	GTCTC	3 cut(s)	478, 486, 857
BstMBI	GATC	9 cut(s)	106, 401, 409, 489, 550, 928, 988, 1018, 1228
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 506, 784, 793
BstNSI	RCATGY	2 cut(s)	325, 761
BstPI	GGTNACC	1 cut(s)	1189
BstSCI	CCNGG	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	834
BstSNI	TACGTA	1 cut(s)	298
BstUI	CGCG	2 cut(s)	951, 1264
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	4 cut(s)	401, 489, 1018, 1228
BstYI	RGATCY	4 cut(s)	401, 489, 1018, 1228
BsuI	GTATCC	1 cut(s)	934
BsuRI	GGCC	1 cut(s)	305
BtgI	CCRYGG	1 cut(s)	1194
BtsCI	GGATG	5 cut(s)	70, 379, 743, 1088, 1204
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	4 cut(s)	206, 445, 768, 1143
BveI	ACCTGC	1 cut(s)	1135
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	2 cut(s)	951, 1266
Cfr10I	RCCGGY	1 cut(s)	363
Cfr13I	GGNCC	3 cut(s)	249, 304, 1124
CseI	GACGC	3 cut(s)	506, 582, 812
Csp6I	GTAC	3 cut(s)	176, 229, 729
CspAI	ACCGGT	1 cut(s)	363
CviQI	GTAC	3 cut(s)	176, 229, 729
DdeI	CTNAG	3 cut(s)	225, 638, 1015
DpnI	GATC	9 cut(s)	108, 403, 411, 491, 552, 930, 990, 1020, 1230
DpnII	GATC	9 cut(s)	106, 401, 409, 489, 550, 928, 988, 1018, 1228
DraI	TTTAAA	1 cut(s)	1272
Eam1104I	CTCTTC	2 cut(s)	733, 951
EarI	CTCTTC	2 cut(s)	733, 951
EciI	GGCGGA	1 cut(s)	262
Eco105I	TACGTA	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	1194
Eco31I	GGTCTC	1 cut(s)	478
Eco47I	GGWCC	2 cut(s)	249, 1124
Eco57I	CTGAAG	1 cut(s)	803
Eco72I	CACGTG	1 cut(s)	657
Eco88I	CYCGRG	1 cut(s)	306
Eco91I	GGTNACC	1 cut(s)	1189
EcoO65I	GGTNACC	1 cut(s)	1189
EcoT14I	CCWWGG	1 cut(s)	1194
ErhI	CCWWGG	1 cut(s)	1194
FaqI	GGGAC	2 cut(s)	275, 975
FauI	CCCGC	1 cut(s)	1269
FbaI	TGATCA	2 cut(s)	106, 928
FblI	GTMKAC	1 cut(s)	840
Fnu4HI	GCNGC	2 cut(s)	54, 776
FokI	GGATG	5 cut(s)	57, 366, 730, 1095, 1211
Fsp4HI	GCNGC	2 cut(s)	54, 776
FspBI	CTAG	2 cut(s)	188, 1047
GlaI	GCGC	2 cut(s)	950, 1265
GluI	GCNGC	2 cut(s)	54, 776
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	2 cut(s)	243, 364
HgaI	GACGC	3 cut(s)	506, 582, 812
HhaI	GCGC	2 cut(s)	951, 1266
Hin1I	GRCGYC	2 cut(s)	804, 964
Hin6I	GCGC	2 cut(s)	949, 1264
HinP1I	GCGC	2 cut(s)	949, 1264
HinfI	GANTC	3 cut(s)	309, 905, 1010
HpaII	CCGG	2 cut(s)	243, 364
HphI	GGTGA	1 cut(s)	1201
Hpy166II	GTNNAC	4 cut(s)	7, 766, 841, 1044
Hpy188III	TCNNGA	5 cut(s)	344, 407, 554, 735, 1064
Hpy8I	GTNNAC	4 cut(s)	7, 766, 841, 1044
Hpy99I	CGWCG	1 cut(s)	969
HpyCH4III	ACNGT	2 cut(s)	210, 1147
HpyCH4IV	ACGT	5 cut(s)	174, 297, 656, 724, 964
HpyCH4V	TGCA	5 cut(s)	30, 90, 99, 761, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 506, 784, 793
HpyF3I	CTNAG	3 cut(s)	225, 638, 1015
HpySE526I	ACGT	5 cut(s)	174, 297, 656, 724, 964
Hsp92I	GRCGYC	2 cut(s)	804, 964
HspAI	GCGC	2 cut(s)	949, 1264
KpnI	GGTACC	1 cut(s)	732
Ksp22I	TGATCA	2 cut(s)	106, 928
Kzo9I	GATC	9 cut(s)	106, 401, 409, 489, 550, 928, 988, 1018, 1228
LguI	GCTCTTC	1 cut(s)	733
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	4 cut(s)	108, 271, 691, 752
MaeI	CTAG	2 cut(s)	188, 1047
MaeII	ACGT	5 cut(s)	174, 297, 656, 724, 964
MaeIII	GTNAC	6 cut(s)	63, 210, 317, 679, 897, 1189
MalI	GATC	9 cut(s)	108, 403, 411, 491, 552, 930, 990, 1020, 1230
MboI	GATC	9 cut(s)	106, 401, 409, 489, 550, 928, 988, 1018, 1228
MboII	GAAGA	5 cut(s)	136, 569, 750, 904, 968
MfeI	CAATTG	2 cut(s)	465, 992
MflI	RGATCY	4 cut(s)	401, 489, 1018, 1228
MhlI	GDGCHC	1 cut(s)	656
MluCI	AATT	5 cut(s)	274, 465, 619, 992, 1235
MlyI	GAGTC	1 cut(s)	318
MmeI	TCCRAC	4 cut(s)	143, 978, 1046, 1102
MseI	TTAA	3 cut(s)	579, 1056, 1271
MspI	CCGG	2 cut(s)	243, 364
MspR9I	CCNGG	1 cut(s)	244
MunI	CAATTG	2 cut(s)	465, 992
MvnI	CGCG	2 cut(s)	951, 1264
MwoI	GCNNNNNNNGC	4 cut(s)	96, 506, 784, 793
NciI	CCSGG	1 cut(s)	244
NcoI	CCATGG	1 cut(s)	1194
NdeII	GATC	9 cut(s)	106, 401, 409, 489, 550, 928, 988, 1018, 1228
NlaIV	GGNNCC	2 cut(s)	730, 1139
NmuCI	GTSAC	4 cut(s)	63, 210, 317, 1189
NspI	RCATGY	2 cut(s)	325, 761
PagI	TCATGA	1 cut(s)	553
PciI	ACATGT	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	733
PfeI	GAWTC	2 cut(s)	905, 1010
PinAI	ACCGGT	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	55, 777
PleI	GAGTC	1 cut(s)	317
PmaCI	CACGTG	1 cut(s)	657
PmlI	CACGTG	1 cut(s)	657
PpsI	GAGTC	1 cut(s)	317
Ppu21I	YACGTR	3 cut(s)	298, 657, 725
PscI	ACATGT	1 cut(s)	321
PshBI	ATTAAT	1 cut(s)	1056
PspCI	CACGTG	1 cut(s)	657
PspEI	GGTNACC	1 cut(s)	1189
PspN4I	GGNNCC	2 cut(s)	730, 1139
PspPI	GGNCC	3 cut(s)	249, 304, 1124
PstI	CTGCAG	1 cut(s)	838
PsuI	RGATCY	4 cut(s)	401, 489, 1018, 1228
RsaI	GTAC	3 cut(s)	177, 230, 730
RsaNI	GTAC	3 cut(s)	176, 229, 729
SapI	GCTCTTC	1 cut(s)	733
SaqAI	TTAA	3 cut(s)	579, 1056, 1271
SatI	GCNGC	2 cut(s)	54, 776
Sau3AI	GATC	9 cut(s)	106, 401, 409, 489, 550, 928, 988, 1018, 1228
Sau96I	GGNCC	3 cut(s)	249, 304, 1124
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	656
SfaNI	GCATC	4 cut(s)	108, 271, 691, 752
SfcI	CTRYAG	1 cut(s)	834
SinI	GGWCC	2 cut(s)	249, 1124
SmlI	CTYRAG	2 cut(s)	521, 769
SmoI	CTYRAG	2 cut(s)	521, 769
SnaBI	TACGTA	1 cut(s)	298
Sse9I	AATT	5 cut(s)	274, 465, 619, 992, 1235
SsiI	CCGC	4 cut(s)	247, 775, 951, 1262
SspI	AATATT	2 cut(s)	514, 1060
SspMI	CTAG	2 cut(s)	188, 1047
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	1194
TaaI	ACNGT	2 cut(s)	210, 1147
TaiI	ACGT	5 cut(s)	177, 300, 659, 727, 967
TaqI	TCGA	5 cut(s)	351, 663, 967, 987, 1065
TasI	AATT	5 cut(s)	274, 465, 619, 992, 1235
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	778
TfiI	GAWTC	2 cut(s)	905, 1010
Tru1I	TTAA	3 cut(s)	579, 1056, 1271
Tru9I	TTAA	3 cut(s)	579, 1056, 1271
TscAI	CASTG	4 cut(s)	213, 445, 768, 1150
TseFI	GTSAC	4 cut(s)	63, 210, 317, 1189
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	4 cut(s)	63, 210, 317, 1189
TspDTI	ATGAA	7 cut(s)	59, 260, 570, 634, 918, 1083, 1215
TspGWI	ACGGA	2 cut(s)	363, 736
TspRI	CASTG	4 cut(s)	213, 445, 768, 1150
VpaK11BI	GGWCC	2 cut(s)	249, 1124
VspI	ATTAAT	1 cut(s)	1056
XceI	RCATGY	2 cut(s)	325, 761
XmiI	GTMKAC	1 cut(s)	840
XspI	CTAG	2 cut(s)	188, 1047
ZraI	GACGTC	1 cut(s)	965
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.