Rh7AG413900

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015639
Physical Location & Seq
Reverse (-)
55556810 .. 55558622
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG413900.1

Sequence Viewer

Length: 1380 bp
ATGGTGGACATGGAGGTAAATATAGTTTGCAGAGATACTATCAAACCCGTAGCTGCTTCCTCGTCGTCACTTCATCCCCATCAAAAACCTTGCAATCTTTGCATCTTTGATCAGCTCATTCCAACAACTTATGTGCCTATGCTTTTCTTCTACCCCATTATTGACCCCAACTTCAACGTACCCCAGACCCTAGCCCATTTGAAAACCTCACTGTCACATACCCTCACTCAGTACTACCCGTTTTCCGGGCGGACCAAAAACAACCTCTATATTCATAATTTTGATGCTGGTGTCCCCTACGTAGAGGCCCGAGTCAAATGTCACATGTTTGAGTTATTTGAGCTTCAAGAAATCGAGTTGCTCAACCGGTTTGTTCCGTTCCATCCATTTCGCAAGGAAACTGGATCTCCTGATCTGTTGCCCTTGATAGCATTTCAAGTCAGTGTTTTTGCTTGTGGTGGCATATCAATTGGGGTCTCTCTGTCTCACAAGATCTTTGACGCACAAACGGCAAATATTTTCCTCAAGTCTTGGGCTTCTGTTTTTCGTAGGGATCATGAAGAAGCAATACAATCAAACCTTAATCTCTGCCAAGCGTCATCAACTTTTCCAGCAAGTGATAATTTACCACAAAAATATCTTAGTTTCATGGAGAGCACGTGGTTCGAGGAAAAGAAGTATGTTACAAGGAGATTTGTGTTTGATGCTAAAGCCATAGCCACATTACGTGAGAAAGCAAAGAGCGAGCTTGTGCCCAATCCAACTCGTGTTGAGACACTCACTTGTTTTCTTTGGAAACATGCAACATTTGCTTCTAGACATGGTGGTACATCACGAAGAGCATCCGTAGTAGCACATGCAGTGAACTTGAGGCGGCGACTGAAGCCACCAATGCCAGATGACGCCATTGGAAATCTATTTTGGTGGGCTACTGCAGTCTACAACACTACTGATAAGGCAGAGACTACTGATGAGTTGTGTGATTTGTTGAAGATATTACATGAATCTCTCAATGGACTTGACCATGATCATTTTTTGGATACATTGCGCGGAGAAGAGGGACGTCGAGCCATTTTTGAATACCTCGATCAATTGTTGGAGGGCATGGATTCCTTAGATCCAACACCAGAAATTTATGCGTTCACTAGCTGGATTAATATTCTCGATGAAGTTGATTTTGGATGGGGAAAGCCATTTTGGATTGGGGTCATGGGAAAAGTTGGACCTGCCTTTAGGAACCTCACTGTGTTCGTCAAAACACAAAGGGGTAACGGCATTGAAGCATGGGTGACCATGGATGAAAAGCAAATGTCTATAATGGAAAAAGATCCTCAATTTTTAGCATTTGCTTCTCCAAACCCGCGCATTTTAAATGTATGA

Protein Analysis

459

Amino Acids

52.37

Weight (kDa)

6.21

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 446 1.7e-72 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1066
Acc36I ACCTGC 1 cut(s) 1234
AccI GTMKAC 1 cut(s) 939
AccII CGCG 2 cut(s) 1050, 1363
AciI CCGC 4 cut(s) 250, 874, 1050, 1361
AclWI GGATC 4 cut(s) 412, 561, 1112, 1322
AcsI RAATTY 1 cut(s) 1131
AcuI CTGAAG 1 cut(s) 902
AcvI CACGTG 1 cut(s) 660
AcyI GRCGYC 2 cut(s) 903, 1063
AfaI GTAC 3 cut(s) 180, 233, 829
AfiI CCNNNNNNNGG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 324
AgeI ACCGGT 1 cut(s) 366
AgsI TTSAA 7 cut(s) 175, 202, 347, 437, 991, 1079, 1280
AjuI GAANNNNNNNTTGG 6 cut(s) 904, 936, 1161, 1180, 1193, 1212
AluBI AGCT 5 cut(s) 53, 115, 343, 748, 1149
AluI AGCT 5 cut(s) 53, 115, 343, 748, 1149
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 4 cut(s) 481, 489, 767, 956
AlwI GGATC 4 cut(s) 412, 561, 1112, 1322
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 1131
AseI ATTAAT 1 cut(s) 1155
AsiGI ACCGGT 1 cut(s) 366
AspLEI GCGC 2 cut(s) 1050, 1365
AspS9I GGNCC 3 cut(s) 252, 307, 1223
AsuC2I CCSGG 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 1300
AvaI CYCGRG 1 cut(s) 309
AvaII GGWCC 2 cut(s) 252, 1223
BaeGI GKGCMC 1 cut(s) 756
BarI GAAGNNNNNNTAC 2 cut(s) 552, 584
BauI CACGAG 1 cut(s) 765
BbrPI CACGTG 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 1 cut(s) 40
BccI CCATC 3 cut(s) 87, 390, 1176
BceAI ACGGC 2 cut(s) 525, 1288
BcgI CGANNNNNNTGC 2 cut(s) 646, 680
BciVI GTATCC 1 cut(s) 1033
BclI TGATCA 2 cut(s) 109, 1027
BcnI CCSGG 1 cut(s) 247
BcoDI GTCTC 4 cut(s) 481, 489, 767, 956
BfaI CTAG 3 cut(s) 191, 816, 1146
BfmI CTRYAG 1 cut(s) 933
BfuAI ACCTGC 1 cut(s) 1234
BfuI GTATCC 1 cut(s) 1033
BglII AGATCT 1 cut(s) 492
BisI GCNGC 2 cut(s) 54, 875
BlsI GCNGC 2 cut(s) 55, 876
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 2 cut(s) 252, 1223
BmeT110I CYCGRG 1 cut(s) 309
BmgT120I GGNCC 3 cut(s) 252, 307, 1223
BmiI GGNNCC 1 cut(s) 1238
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 4 cut(s) 111, 274, 694, 851
BpuEI CTTGAG 2 cut(s) 509, 889
BpuMI CCSGG 1 cut(s) 247
BsaAI YACGTR 3 cut(s) 301, 660, 728
BsaHI GRCGYC 2 cut(s) 903, 1063
BsaI GGTCTC 1 cut(s) 481
BsaJI CCNNGG 1 cut(s) 1293
BsaWI WCCGGW 1 cut(s) 366
BsaXI ACNNNNNCTCC 4 cut(s) 391, 421, 644, 674
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 406
Bse3DI GCAATG 1 cut(s) 1043
BseDI CCNNGG 1 cut(s) 1293
BseGI GGATG 5 cut(s) 73, 382, 842, 1187, 1303
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 1043
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 406
BseSI GKGCMC 1 cut(s) 756
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 2 cut(s) 1050, 1363
BshFI GGCC 1 cut(s) 308
BshTI ACCGGT 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 659
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 2 cut(s) 246, 367
BslFI GGGAC 2 cut(s) 278, 1074
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 4 cut(s) 481, 489, 767, 956
BsmFI GGGAC 2 cut(s) 278, 1074
BsnI GGCC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 481
BsoBI CYCGRG 1 cut(s) 309
Bsp1286I GDGCHC 2 cut(s) 659, 756
Bsp143I GATC 9 cut(s) 109, 404, 412, 492, 553, 1027, 1087, 1117, 1327
Bsp19I CCATGG 1 cut(s) 1293
BspACI CCGC 4 cut(s) 250, 874, 1050, 1361
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 2 cut(s) 1050, 1363
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 1238
BspMAI CTGCAG 1 cut(s) 937
BspMI ACCTGC 1 cut(s) 1234
BspPI GGATC 4 cut(s) 412, 561, 1112, 1322
BspQI GCTCTTC 1 cut(s) 832
BspTNI GGTCTC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 1043
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 1 cut(s) 406
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 1293
BssMI GATC 9 cut(s) 109, 404, 412, 492, 553, 1027, 1087, 1117, 1327
BssNI GRCGYC 2 cut(s) 903, 1063
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 1 cut(s) 1293
Bst2BI CACGAG 1 cut(s) 765
Bst4CI ACNGT 2 cut(s) 213, 1246
Bst6I CTCTTC 2 cut(s) 832, 1050
BstACI GRCGYC 2 cut(s) 903, 1063
BstAPI GCANNNNNTGC 2 cut(s) 99, 809
BstBAI YACGTR 3 cut(s) 301, 660, 728
BstC8I GCNNGC 1 cut(s) 746
BstDEI CTNAG 3 cut(s) 228, 641, 1114
BstDSI CCRYGG 1 cut(s) 1293
BstEII GGTNACC 1 cut(s) 1288
BstF5I GGATG 5 cut(s) 73, 382, 842, 1187, 1303
BstFNI CGCG 2 cut(s) 1050, 1363
BstHHI GCGC 2 cut(s) 1050, 1365
BstKTI GATC 9 cut(s) 112, 407, 415, 495, 556, 1030, 1090, 1120, 1330
BstMAI GTCTC 4 cut(s) 481, 489, 767, 956
BstMBI GATC 9 cut(s) 109, 404, 412, 492, 553, 1027, 1087, 1117, 1327
BstMWI GCNNNNNNNGC 5 cut(s) 99, 509, 809, 883, 892
BstNSI RCATGY 3 cut(s) 328, 803, 860
BstPI GGTNACC 1 cut(s) 1288
BstSCI CCNGG 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 933
BstSLI GKGCMC 1 cut(s) 756
BstSNI TACGTA 1 cut(s) 301
BstUI CGCG 2 cut(s) 1050, 1363
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 4 cut(s) 404, 492, 1117, 1327
BstYI RGATCY 4 cut(s) 404, 492, 1117, 1327
BsuI GTATCC 1 cut(s) 1033
BsuRI GGCC 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 1293
BtsCI GGATG 5 cut(s) 73, 382, 842, 1187, 1303
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 4 cut(s) 209, 448, 867, 1242
BveI ACCTGC 1 cut(s) 1234
Cac8I GCNNGC 1 cut(s) 746
CciI TCATGA 1 cut(s) 556
CfoI GCGC 2 cut(s) 1050, 1365
Cfr10I RCCGGY 1 cut(s) 366
Cfr13I GGNCC 3 cut(s) 252, 307, 1223
CseI GACGC 3 cut(s) 509, 585, 911
Csp6I GTAC 3 cut(s) 179, 232, 828
CspAI ACCGGT 1 cut(s) 366
CviQI GTAC 3 cut(s) 179, 232, 828
DdeI CTNAG 3 cut(s) 228, 641, 1114
DpnI GATC 9 cut(s) 111, 406, 414, 494, 555, 1029, 1089, 1119, 1329
DpnII GATC 9 cut(s) 109, 404, 412, 492, 553, 1027, 1087, 1117, 1327
DraI TTTAAA 1 cut(s) 1371
Eam1104I CTCTTC 2 cut(s) 832, 1050
EarI CTCTTC 2 cut(s) 832, 1050
EciI GGCGGA 1 cut(s) 265
Eco105I TACGTA 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 1293
Eco31I GGTCTC 1 cut(s) 481
Eco47I GGWCC 2 cut(s) 252, 1223
Eco57I CTGAAG 1 cut(s) 902
Eco72I CACGTG 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 309
Eco91I GGTNACC 1 cut(s) 1288
EcoO65I GGTNACC 1 cut(s) 1288
EcoT14I CCWWGG 1 cut(s) 1293
ErhI CCWWGG 1 cut(s) 1293
FaqI GGGAC 2 cut(s) 278, 1074
FauI CCCGC 1 cut(s) 1368
FbaI TGATCA 2 cut(s) 109, 1027
FblI GTMKAC 1 cut(s) 939
Fnu4HI GCNGC 2 cut(s) 54, 875
FokI GGATG 5 cut(s) 60, 369, 829, 1194, 1310
Fsp4HI GCNGC 2 cut(s) 54, 875
FspBI CTAG 3 cut(s) 191, 816, 1146
GlaI GCGC 2 cut(s) 1049, 1364
GluI GCNGC 2 cut(s) 54, 875
HaeIII GGCC 1 cut(s) 308
HapII CCGG 2 cut(s) 246, 367
HgaI GACGC 3 cut(s) 509, 585, 911
HhaI GCGC 2 cut(s) 1050, 1365
Hin1I GRCGYC 2 cut(s) 903, 1063
Hin6I GCGC 2 cut(s) 1048, 1363
HinP1I GCGC 2 cut(s) 1048, 1363
HinfI GANTC 3 cut(s) 312, 1004, 1109
HpaII CCGG 2 cut(s) 246, 367
HphI GGTGA 1 cut(s) 1300
Hpy166II GTNNAC 4 cut(s) 7, 865, 940, 1143
Hpy188III TCNNGA 6 cut(s) 347, 410, 557, 816, 834, 1163
Hpy8I GTNNAC 4 cut(s) 7, 865, 940, 1143
Hpy99I CGWCG 2 cut(s) 67, 1068
HpyCH4III ACNGT 2 cut(s) 213, 1246
HpyCH4IV ACGT 5 cut(s) 177, 300, 659, 727, 1063
HpyCH4V TGCA 6 cut(s) 30, 93, 102, 803, 860, 935
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 509, 809, 883, 892
HpyF3I CTNAG 3 cut(s) 228, 641, 1114
HpySE526I ACGT 5 cut(s) 177, 300, 659, 727, 1063
Hsp92I GRCGYC 2 cut(s) 903, 1063
HspAI GCGC 2 cut(s) 1048, 1363
Ksp22I TGATCA 2 cut(s) 109, 1027
Kzo9I GATC 9 cut(s) 109, 404, 412, 492, 553, 1027, 1087, 1117, 1327
LguI GCTCTTC 1 cut(s) 832
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 4 cut(s) 111, 274, 694, 851
MaeI CTAG 3 cut(s) 191, 816, 1146
MaeII ACGT 5 cut(s) 177, 300, 659, 727, 1063
MaeIII GTNAC 6 cut(s) 66, 213, 320, 682, 1268, 1288
MalI GATC 9 cut(s) 111, 406, 414, 494, 555, 1029, 1089, 1119, 1329
MboI GATC 9 cut(s) 109, 404, 412, 492, 553, 1027, 1087, 1117, 1327
MboII GAAGA 5 cut(s) 139, 572, 849, 1003, 1067
MfeI CAATTG 2 cut(s) 468, 1091
MflI RGATCY 4 cut(s) 404, 492, 1117, 1327
MhlI GDGCHC 2 cut(s) 659, 756
MluCI AATT 6 cut(s) 277, 468, 622, 1091, 1131, 1334
MlyI GAGTC 1 cut(s) 321
MmeI TCCRAC 5 cut(s) 146, 785, 1077, 1145, 1201
MseI TTAA 3 cut(s) 582, 1155, 1370
MspI CCGG 2 cut(s) 246, 367
MspR9I CCNGG 1 cut(s) 247
MunI CAATTG 2 cut(s) 468, 1091
MvnI CGCG 2 cut(s) 1050, 1363
MwoI GCNNNNNNNGC 5 cut(s) 99, 509, 809, 883, 892
NciI CCSGG 1 cut(s) 247
NcoI CCATGG 1 cut(s) 1293
NdeII GATC 9 cut(s) 109, 404, 412, 492, 553, 1027, 1087, 1117, 1327
NlaIV GGNNCC 1 cut(s) 1238
NmuCI GTSAC 4 cut(s) 66, 213, 320, 1288
NspI RCATGY 3 cut(s) 328, 803, 860
PagI TCATGA 1 cut(s) 556
PciI ACATGT 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 832
PfeI GAWTC 2 cut(s) 1004, 1109
PinAI ACCGGT 1 cut(s) 366
PkrI GCNGC 2 cut(s) 55, 876
PleI GAGTC 1 cut(s) 320
PmaCI CACGTG 1 cut(s) 660
PmlI CACGTG 1 cut(s) 660
PpsI GAGTC 1 cut(s) 320
Ppu21I YACGTR 3 cut(s) 301, 660, 728
PscI ACATGT 1 cut(s) 324
PshBI ATTAAT 1 cut(s) 1155
PspCI CACGTG 1 cut(s) 660
PspEI GGTNACC 1 cut(s) 1288
PspN4I GGNNCC 1 cut(s) 1238
PspPI GGNCC 3 cut(s) 252, 307, 1223
PstI CTGCAG 1 cut(s) 937
PsuI RGATCY 4 cut(s) 404, 492, 1117, 1327
RsaI GTAC 3 cut(s) 180, 233, 829
RsaNI GTAC 3 cut(s) 179, 232, 828
SapI GCTCTTC 1 cut(s) 832
SaqAI TTAA 3 cut(s) 582, 1155, 1370
SatI GCNGC 2 cut(s) 54, 875
Sau3AI GATC 9 cut(s) 109, 404, 412, 492, 553, 1027, 1087, 1117, 1327
Sau96I GGNCC 3 cut(s) 252, 307, 1223
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 1 cut(s) 321
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 2 cut(s) 659, 756
SfaNI GCATC 4 cut(s) 111, 274, 694, 851
SfcI CTRYAG 1 cut(s) 933
SinI GGWCC 2 cut(s) 252, 1223
SmlI CTYRAG 2 cut(s) 524, 868
SmoI CTYRAG 2 cut(s) 524, 868
SnaBI TACGTA 1 cut(s) 301
Sse9I AATT 6 cut(s) 277, 468, 622, 1091, 1131, 1334
SsiI CCGC 4 cut(s) 250, 874, 1050, 1361
SspI AATATT 2 cut(s) 517, 1159
SspMI CTAG 3 cut(s) 191, 816, 1146
StyD4I CCNGG 1 cut(s) 245
StyI CCWWGG 1 cut(s) 1293
TaaI ACNGT 2 cut(s) 213, 1246
TaiI ACGT 5 cut(s) 180, 303, 662, 730, 1066
TaqI TCGA 5 cut(s) 354, 666, 1066, 1086, 1164
TasI AATT 6 cut(s) 277, 468, 622, 1091, 1131, 1334
TatI WGTACW 1 cut(s) 231
TauI GCSGC 1 cut(s) 877
TfiI GAWTC 2 cut(s) 1004, 1109
Tru1I TTAA 3 cut(s) 582, 1155, 1370
Tru9I TTAA 3 cut(s) 582, 1155, 1370
TscAI CASTG 4 cut(s) 216, 448, 867, 1249
TseFI GTSAC 4 cut(s) 66, 213, 320, 1288
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 4 cut(s) 66, 213, 320, 1288
TspDTI ATGAA 7 cut(s) 62, 263, 573, 637, 1017, 1182, 1314
TspGWI ACGGA 2 cut(s) 366, 835
TspRI CASTG 4 cut(s) 216, 448, 867, 1249
VpaK11BI GGWCC 2 cut(s) 252, 1223
VspI ATTAAT 1 cut(s) 1155
XapI RAATTY 1 cut(s) 1131
XbaI TCTAGA 1 cut(s) 815
XceI RCATGY 3 cut(s) 328, 803, 860
XmiI GTMKAC 1 cut(s) 939
XspI CTAG 3 cut(s) 191, 816, 1146
ZraI GACGTC 1 cut(s) 1064
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.