RLG00000001580

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
17767656 .. 17771987
4332 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001580

Sequence Viewer

Length: 1242 bp
ATGAACACTCTGGGCGATCTTGTGACCATCGGCGCCCATCCTAAATCGGACGGCTCCGATCACCGCTACAATGAAGGCGACGTGGTCCCCCTCTACGCCAATGAGGTCGGCCCCTTCCACAACCCCAGTGAGACGTATCGCTATTTTGATCTGCCATTTTGCTCACCAGGTGATGTGAAGGAGAAGAGGGAAGCTCTTGGGGAGGGGGAGATGCTGAATGGAGATCATCTAGTGAGTGCTCCTTCTAAACTTGAGTTCAGGAAAGAGAAAGACACCAAAGTTGCTTGTAGAAGGAAGCTGACCAAGGAGGAAGTTGCGCAGTTTCGAAAGGCTCTAAAAAAGGTTTACTACCTTCAAATGTACTATGACGACTTGCCCATCCGGGGGTTCTTAGGAAAGGTTGACAAGGAAGGAAAAACTGACCCAAATGAATACAAATATTTCCTTGTGGACTTGACAGAGGACGAGGACGTTGATGCAGATTTCATGTCCACTGTGAAATGGAGAGAGACAAATATTCCATTTGAGAATAGAATGGATAAGTCCTCACAGTCTTCTTCACTGCCACATCACTTGGAAATTCATTGTTCATCCGATGACCAAGAAGAGACAGGATGGAAGTACATTCATGGTGATGCTTTCCGGTTTCCCAAGTACAAATTGTTGTTTGCTGCTGCCCATGGTTCTGGAAACCAGTTGTTCACCCTCACAGTGTTCATTTTTATGCTTGCACTGGTCGGTGTATTTTATCCATACAACCGAGGAGCTCTGTTCACTGCTCTTGTGGTCATATACACACTCACATCGGGCATTGCGGGATATACTTCAACCTCTTTCTACCGTCAGCATGAAGGGACAAATTGGTGCTGTGCAACTGCAGCTCTTCCTTTTGGTACTATTGTGGTAATTGTCCTTATCTGGACATTGGTAACAGCACCATTGCTCGTCTTGGGTGGTATTGCTGGGAAGAACAGTAAGGTTGAGATCCATGCTTCTTGTCGCACCACAAAGTATCCTCGAGAAATTCCAACTCTGCCATGGTACAGGACAACTGTTCCTCAGATGGCAATGGCAGGATATCTCCCTTTCAGTGCGATTTACATTGAGCTTTACTACATATTTGCCAGTGTTTGGGGTCACAGGATTTACTCCATCTACAGCATTCTGTTTATTGTTTTTCTTATTTTTGATTGTCACTGCCTTTATAACTGTGGCTTTGACCTACTTCCAACTTGCTGCTGA

Protein Analysis

414

Amino Acids

46.98

Weight (kDa)

6.12

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 45 - 143 4.2e-19 Endomembrane protein 70
EMP70 PF02990 199 - 288 3.4e-29 Endomembrane protein 70
EMP70 PF02990 291 - 398 3.9e-34 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1206
Acc16I TGCGCA 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 1131
AciI CCGC 2 cut(s) 64, 815
AclWI GGATC 1 cut(s) 979
AcsI RAATTY 2 cut(s) 579, 1023
AcyI GRCGYC 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 5 cut(s) 362, 623, 656, 895, 1043
AfiI CCNNNNNNNGG 3 cut(s) 383, 384, 1131
AgsI TTSAA 2 cut(s) 356, 828
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 5 cut(s) 194, 298, 767, 881, 1108
AluI AGCT 5 cut(s) 194, 298, 767, 881, 1108
Alw21I GWGCWC 2 cut(s) 241, 769
Alw26I GTCTC 3 cut(s) 125, 503, 602
AlwI GGATC 1 cut(s) 979
Ama87I CYCGRG 1 cut(s) 1017
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 4 cut(s) 671, 674, 878, 1236
ApoI RAATTY 2 cut(s) 579, 1023
AspLEI GCGC 2 cut(s) 35, 319
AspS9I GGNCC 2 cut(s) 85, 110
AsuC2I CCSGG 1 cut(s) 383
AsuHPI GGTGA 5 cut(s) 53, 156, 182, 644, 694
AsuII TTCGAA 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 1017
AvaII GGWCC 1 cut(s) 85
BaeI ACNNNNGTAYC 2 cut(s) 885, 918
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 769
BbsI GAAGAC 1 cut(s) 546
Bbv12I GWGCWC 2 cut(s) 241, 769
BbvI GCAGC 4 cut(s) 658, 661, 890, 1223
BccI CCATC 6 cut(s) 35, 45, 386, 609, 1057, 1160
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 1 cut(s) 1023
BcnI CCSGG 1 cut(s) 383
BcoDI GTCTC 3 cut(s) 125, 503, 602
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 2 cut(s) 876, 1156
BfoI RGCGCY 1 cut(s) 36
BfuI GTATCC 1 cut(s) 1023
BisI GCNGC 4 cut(s) 672, 675, 879, 1237
BlsI GCNGC 4 cut(s) 673, 676, 880, 1238
Bme1390I CCNGG 2 cut(s) 168, 383
Bme18I GGWCC 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 1017
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 85, 110
BmiI GGNNCC 4 cut(s) 34, 55, 87, 112
BmrFI CCNGG 2 cut(s) 168, 383
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 3 cut(s) 201, 466, 625
BmuI ACTGGG 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 546
BplI GAGNNNNNCTC 2 cut(s) 178, 210
Bpu14I TTCGAA 1 cut(s) 325
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 5 cut(s) 303, 382, 679, 760, 1037
BsaWI WCCGGW 1 cut(s) 642
Bsc4I CCNNNNNNNGG 3 cut(s) 383, 384, 1131
Bse1I ACTGG 4 cut(s) 126, 694, 738, 1125
Bse3DI GCAATG 3 cut(s) 810, 938, 1074
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 5 cut(s) 303, 382, 679, 760, 1037
BseGI GGATG 4 cut(s) 37, 378, 590, 620
BseLI CCNNNNNNNGG 3 cut(s) 383, 384, 1131
BseMI GCAATG 3 cut(s) 810, 938, 1074
BseMII CTCAG 1 cut(s) 1073
BseNI ACTGG 4 cut(s) 126, 694, 738, 1125
BseRI GAGGAG 1 cut(s) 777
BseXI GCAGC 4 cut(s) 658, 661, 890, 1223
BseYI CCCAGC 1 cut(s) 962
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 2 cut(s) 241, 769
BsiHKCI CYCGRG 1 cut(s) 1017
BsiSI CCGG 2 cut(s) 382, 643
BslFI GGGAC 2 cut(s) 71, 868
BslI CCNNNNNNNGG 3 cut(s) 383, 384, 1131
BsmAI GTCTC 3 cut(s) 125, 503, 602
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 2 cut(s) 71, 868
BsmI GAATGC 1 cut(s) 1161
BsnI GGCC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 1017
Bsp119I TTCGAA 1 cut(s) 325
Bsp1286I GDGCHC 2 cut(s) 241, 769
Bsp143I GATC 5 cut(s) 16, 58, 148, 223, 984
Bsp19I CCATGG 2 cut(s) 679, 1037
BspACI CCGC 2 cut(s) 64, 815
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 1072
BspLI GGNNCC 4 cut(s) 34, 55, 87, 112
BspMAI CTGCAG 1 cut(s) 880
BspPI GGATC 1 cut(s) 979
BspQI GCTCTTC 1 cut(s) 888
BspT104I TTCGAA 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 3 cut(s) 810, 938, 1074
BsrI ACTGG 4 cut(s) 126, 694, 738, 1125
BssECI CCNNGG 5 cut(s) 303, 382, 679, 760, 1037
BssMI GATC 5 cut(s) 16, 58, 148, 223, 984
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 3 cut(s) 303, 679, 1037
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 7 cut(s) 496, 552, 712, 842, 974, 1054, 1211
Bst6I CTCTTC 3 cut(s) 179, 600, 888
BstACI GRCGYC 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 729
BstDEI CTNAG 2 cut(s) 391, 1059
BstDSI CCRYGG 2 cut(s) 679, 1037
BstF5I GGATG 4 cut(s) 37, 378, 590, 620
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 2 cut(s) 35, 319
BstKTI GATC 5 cut(s) 19, 61, 151, 226, 987
BstMAI GTCTC 3 cut(s) 125, 503, 602
BstMBI GATC 5 cut(s) 16, 58, 148, 223, 984
BstMWI GCNNNNNNNGC 1 cut(s) 878
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 166, 381
BstSFI CTRYAG 2 cut(s) 876, 1156
BstV1I GCAGC 4 cut(s) 658, 661, 890, 1223
BstV2I GAAGAC 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 984
BstXI CCANNNNNNTGG 1 cut(s) 686
BstYI RGATCY 1 cut(s) 984
BsuI GTATCC 1 cut(s) 1023
BsuRI GGCC 1 cut(s) 111
BtgI CCRYGG 2 cut(s) 679, 1037
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 4 cut(s) 37, 378, 590, 620
BtsI GCAGTG 3 cut(s) 560, 774, 1195
BtsIMutI CAGTG 9 cut(s) 133, 492, 560, 717, 731, 774, 1096, 1132, 1195
Cac8I GCNNGC 1 cut(s) 729
CfoI GCGC 2 cut(s) 35, 319
Cfr13I GGNCC 2 cut(s) 85, 110
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 5 cut(s) 361, 622, 655, 894, 1042
CspCI CAANNNNNGTGG 2 cut(s) 555, 590
CviAII CATG 6 cut(s) 487, 629, 680, 848, 989, 1038
CviJI RGCY 9 cut(s) 54, 111, 194, 298, 332, 767, 881, 1108, 1215
CviKI_1 RGCY 9 cut(s) 54, 111, 194, 298, 332, 767, 881, 1108, 1215
CviQI GTAC 5 cut(s) 361, 622, 655, 894, 1042
DdeI CTNAG 2 cut(s) 391, 1059
DinI GGCGCC 1 cut(s) 34
DpnI GATC 5 cut(s) 18, 60, 150, 225, 986
DpnII GATC 5 cut(s) 16, 58, 148, 223, 984
DraIII CACNNNGTG 1 cut(s) 170
Eam1104I CTCTTC 3 cut(s) 179, 600, 888
EarI CTCTTC 3 cut(s) 179, 600, 888
Ecl136II GAGCTC 1 cut(s) 767
Eco130I CCWWGG 3 cut(s) 303, 679, 1037
Eco24I GRGCYC 1 cut(s) 769
Eco32I GATATC 1 cut(s) 1079
Eco47I GGWCC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 767
Eco88I CYCGRG 1 cut(s) 1017
EcoICRI GAGCTC 1 cut(s) 767
EcoRII CCWGG 1 cut(s) 166
EcoRV GATATC 1 cut(s) 1079
EcoT14I CCWWGG 3 cut(s) 303, 679, 1037
EcoT38I GRGCYC 1 cut(s) 769
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
ErhI CCWWGG 3 cut(s) 303, 679, 1037
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 6 cut(s) 490, 632, 683, 851, 992, 1041
FaqI GGGAC 2 cut(s) 71, 868
FatI CATG 6 cut(s) 486, 628, 679, 847, 988, 1037
FauI CCCGC 1 cut(s) 808
Fnu4HI GCNGC 4 cut(s) 672, 675, 879, 1237
FokI GGATG 4 cut(s) 24, 365, 577, 627
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 4 cut(s) 672, 675, 879, 1237
FspBI CTAG 1 cut(s) 230
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 2 cut(s) 34, 318
GluI GCNGC 4 cut(s) 672, 675, 879, 1237
GsaI CCCAGC 1 cut(s) 966
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 1 cut(s) 111
HapII CCGG 2 cut(s) 382, 643
HhaI GCGC 2 cut(s) 35, 319
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 6 cut(s) 490, 632, 683, 851, 992, 1041
Hin6I GCGC 2 cut(s) 33, 317
HinP1I GCGC 2 cut(s) 33, 317
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HpaII CCGG 2 cut(s) 382, 643
HphI GGTGA 5 cut(s) 53, 156, 182, 644, 694
Hpy166II GTNNAC 6 cut(s) 346, 403, 451, 492, 702, 774
Hpy188I TCNGA 4 cut(s) 49, 58, 595, 1062
Hpy188III TCNNGA 4 cut(s) 259, 687, 919, 1019
Hpy8I GTNNAC 6 cut(s) 346, 403, 451, 492, 702, 774
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 8 cut(s) 68, 124, 172, 252, 285, 362, 404, 845
HpyCH4III ACNGT 7 cut(s) 496, 552, 712, 842, 974, 1054, 1211
HpyCH4IV ACGT 3 cut(s) 81, 134, 471
HpyCH4V TGCA 4 cut(s) 479, 731, 872, 878
HpyF10VI GCNNNNNNNGC 1 cut(s) 878
HpyF3I CTNAG 2 cut(s) 391, 1059
HpySE526I ACGT 3 cut(s) 81, 134, 471
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 6 cut(s) 490, 632, 683, 851, 992, 1041
HspAI GCGC 2 cut(s) 33, 317
KasI GGCGCC 1 cut(s) 32
Kzo9I GATC 5 cut(s) 16, 58, 148, 223, 984
LguI GCTCTTC 1 cut(s) 888
LmnI GCTCC 3 cut(s) 59, 244, 764
Lsp1109I GCAGC 4 cut(s) 658, 661, 890, 1223
LweI GCATC 3 cut(s) 201, 466, 625
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 1 cut(s) 230
MaeII ACGT 3 cut(s) 81, 134, 471
MaeIII GTNAC 4 cut(s) 22, 928, 1136, 1193
MalI GATC 5 cut(s) 18, 60, 150, 225, 986
MboI GATC 5 cut(s) 16, 58, 148, 223, 984
MboII GAAGA 6 cut(s) 196, 546, 549, 617, 875, 979
MflI RGATCY 1 cut(s) 984
MhlI GDGCHC 2 cut(s) 241, 769
MluCI AATT 5 cut(s) 579, 659, 859, 906, 1023
Mly113I GGCGCC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 1052
MslI CAYNNNNRTG 2 cut(s) 633, 722
MspI CCGG 2 cut(s) 382, 643
MspR9I CCNGG 2 cut(s) 168, 383
Mva1269I GAATGC 1 cut(s) 1161
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 878
NarI GGCGCC 1 cut(s) 33
NciI CCSGG 1 cut(s) 383
NcoI CCATGG 2 cut(s) 679, 1037
NdeII GATC 5 cut(s) 16, 58, 148, 223, 984
NlaIII CATG 6 cut(s) 490, 632, 683, 851, 992, 1041
NlaIV GGNNCC 4 cut(s) 34, 55, 87, 112
NmuCI GTSAC 3 cut(s) 22, 1136, 1193
NsbI TGCGCA 1 cut(s) 318
NspV TTCGAA 1 cut(s) 325
PaeR7I CTCGAG 1 cut(s) 1017
PciSI GCTCTTC 1 cut(s) 888
PctI GAATGC 1 cut(s) 1161
PflFI GACNNNGTC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 1131
PkrI GCNGC 4 cut(s) 673, 676, 880, 1238
PluTI GGCGCC 1 cut(s) 36
PsiI TTATAA 1 cut(s) 1206
Psp124BI GAGCTC 1 cut(s) 769
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 962
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 4 cut(s) 34, 55, 87, 112
PspPI GGNCC 2 cut(s) 85, 110
PstI CTGCAG 1 cut(s) 880
PsuI RGATCY 1 cut(s) 984
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 5 cut(s) 362, 623, 656, 895, 1043
RsaNI GTAC 5 cut(s) 361, 622, 655, 894, 1042
RseI CAYNNNNRTG 2 cut(s) 633, 722
SacI GAGCTC 1 cut(s) 769
SapI GCTCTTC 1 cut(s) 888
SatI GCNGC 4 cut(s) 672, 675, 879, 1237
Sau3AI GATC 5 cut(s) 16, 58, 148, 223, 984
Sau96I GGNCC 2 cut(s) 85, 110
ScrFI CCNGG 2 cut(s) 168, 383
SduI GDGCHC 2 cut(s) 241, 769
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 3 cut(s) 201, 466, 625
SfcI CTRYAG 2 cut(s) 876, 1156
SfoI GGCGCC 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 1017
SfuI TTCGAA 1 cut(s) 325
SinI GGWCC 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 1017
SmiMI CAYNNNNRTG 2 cut(s) 633, 722
SmlI CTYRAG 2 cut(s) 251, 1017
SmoI CTYRAG 2 cut(s) 251, 1017
Sse9I AATT 5 cut(s) 579, 659, 859, 906, 1023
SsiI CCGC 2 cut(s) 64, 815
SspDI GGCGCC 1 cut(s) 32
SspI AATATT 2 cut(s) 440, 517
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 769
StyD4I CCNGG 2 cut(s) 166, 381
StyI CCWWGG 3 cut(s) 303, 679, 1037
TaaI ACNGT 7 cut(s) 496, 552, 712, 842, 974, 1054, 1211
TaiI ACGT 3 cut(s) 84, 137, 474
TaqI TCGA 2 cut(s) 325, 1018
TasI AATT 5 cut(s) 579, 659, 859, 906, 1023
TatI WGTACW 3 cut(s) 360, 621, 654
TscAI CASTG 9 cut(s) 133, 499, 567, 717, 738, 781, 1096, 1132, 1202
TseFI GTSAC 3 cut(s) 22, 1136, 1193
TseI GCWGC 4 cut(s) 671, 674, 878, 1236
Tsp45I GTSAC 3 cut(s) 22, 1136, 1193
TspDTI ATGAA 9 cut(s) 17, 87, 444, 475, 572, 579, 617, 706, 864
TspRI CASTG 9 cut(s) 133, 499, 567, 717, 738, 781, 1096, 1132, 1202
Tth111I GACNNNGTC 1 cut(s) 83
Van91I CCANNNNNTGG 1 cut(s) 1131
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 2 cut(s) 579, 1023
XcmI CCANNNNNNNNNTGG 1 cut(s) 1035
XhoI CTCGAG 1 cut(s) 1017
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.