Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005262

Physical Location & Seq

Genomic Coordinates Reverse (-)

41304795 .. 41306875

Gene Structure 2081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG382100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAAGGCGACCTTCCACAACCCCAGTGAGGCGTTTCGCTATTTTGATCTGCCATTTTGCTCACCAGGTGATGTGAAGGAGAAGAGGGAAGCTCTCGGGGAGGGGGAGGTGCTGAATGGAGATCGTCTAGTGAGTGCTCCTTATAAACTTGAGTTCAGGAAAGAGAAAGACACCGAAGTTGCTTGTACAAGGAAGCTGACCAAGGAGGAAGTTGCGCAGTTTCGAAAGGCTGTGAAAAAGGATTACTACCTTCAAATGTACTATGACGACTTGCCCATCTGGGGGTTCTTAGGAAAGAGGACAAGGACATTGATGCAGATTTCATTTCTCCTTTTGACGGGTTTTCTTGCAACAATTCTCATGCGAGTCTTGAAGAATGATTTCATGAAGTATGCCCAAGATGAGGAAGCAGCCGATGACCAAGAAGAGACAGGATGGAAGTACATTCATGGTGATGTTTTCCGGTTTCCCAAGTACAAATTGTTGTTTGCTGCTGCCCATGGTTCTGGAACCCAGTTGTTCACCCTCACAAAATGCTTGCACTGGTCGGTGTATTTTATCCATACAACCGAGGAGCTCTGTTCACTGCTCTTGTGGTCATATACGCACTCACATCTGGCATTCCGGGATATACTTCAACCTCTTTCTACTGTCAGCTTGAAGGGACAAATTGGGTCAGAAATTTATTACTTACTGTGCTGTGCAACTGCAGCTCTTCCTTTTGGTACTATTGTGGTAATTGTCCTTATCTGGACATTGGTAACAGCACCATTGCTCGTCTTGGGTGGTATTGCTGGGAAGAACAGTAAGGTTGAGATCCATGCTTCTTGTCGCACCACAAAGTATCCTCGAGAAATTCCAACTCTGCCATGGTACAGGACACCTGTTCCTCAGATGGCAATGGCAGGATTTCTCCCTTTCAGTGCGATTTACATTGAGCTTTACTACATATTTGCCAGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

321

Amino Acids

36.76

Weight (kDa)

8.33

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP70	PF02990	12 - 96	6.3e-22	Endomembrane protein 70
EMP70	PF02990	108 - 183	1.3e-22	Endomembrane protein 70
EMP70	PF02990	235 - 321	2e-27	Endomembrane protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14670 AT2G01970
fragaria_vesca	FvH4_4g35870 FvH4_4g35870 FvH4_4g35870 FvH4_4g35870 FvH4_4g35870
malus_domestica	MD13G1014300.v1.1 MD16G1011700.v1.1
prunus_persica	Prupe.1G339100_v2.0.a1
pyrus_communis	pycom13g01240
rosa_chinensis	RchiOBHm_Chr4g0445481
rosa_laevigata	RLG00000001580 RLG00000005738
rosa_multiflora	Rmu_sc0001509.1_g000009 Rmu_sc0010069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231310 Rroxscaffold_5G00385960
rosa_rugosa	Rorug04G0361500 Rorug04G0361600 Rorug07G0246700
rosa_samantha	Rh4AG423000 Rh4BG435000 Rh4CG449900 Rh4DG431300 Rh7AG400600 Rh7BG382100
rosa_wichuraiana	Rw4G036270 Rw7G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	144
Acc16I	TGCGCA	1 cut(s)	216
AclWI	GGATC	1 cut(s)	811
AcsI	RAATTY	2 cut(s)	681, 855
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	6 cut(s)	187, 260, 443, 476, 727, 875
AfiI	CCNNNNNNNGG	5 cut(s)	28, 281, 282, 337, 403
AgsI	TTSAA	4 cut(s)	254, 373, 638, 661
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	6 cut(s)	92, 196, 577, 657, 713, 940
AluI	AGCT	6 cut(s)	92, 196, 577, 657, 713, 940
Alw21I	GWGCWC	2 cut(s)	139, 579
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	811
Ama87I	CYCGRG	2 cut(s)	95, 849
ApeKI	GCWGC	4 cut(s)	410, 491, 494, 710
ApoI	RAATTY	2 cut(s)	681, 855
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	4 cut(s)	54, 80, 464, 514
AsuII	TTCGAA	1 cut(s)	223
AvaI	CYCGRG	2 cut(s)	95, 849
BaeI	ACNNNNGTAYC	2 cut(s)	717, 750
BanII	GRGCYC	1 cut(s)	579
Bbv12I	GWGCWC	2 cut(s)	139, 579
BbvI	GCAGC	4 cut(s)	422, 478, 481, 722
BccI	CCATC	3 cut(s)	284, 429, 889
BciT130I	CCWGG	1 cut(s)	66
BciVI	GTATCC	1 cut(s)	855
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	2 cut(s)	128, 964
BfmI	CTRYAG	1 cut(s)	708
BfuI	GTATCC	1 cut(s)	855
BisI	GCNGC	4 cut(s)	411, 492, 495, 711
BlsI	GCNGC	4 cut(s)	412, 493, 496, 712
Bme1390I	CCNGG	2 cut(s)	66, 626
BmeT110I	CYCGRG	2 cut(s)	95, 849
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	2 cut(s)	66, 626
BmrI	ACTGGG	2 cut(s)	18, 508
BmsI	GCATC	1 cut(s)	303
BmuI	ACTGGG	2 cut(s)	18, 508
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
Bpu14I	TTCGAA	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	626
BsaJI	CCNNGG	4 cut(s)	201, 499, 570, 869
BsaWI	WCCGGW	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 281, 282, 337, 403
Bse1I	ACTGG	4 cut(s)	24, 514, 548, 957
Bse3DI	GCAATG	2 cut(s)	770, 906
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	4 cut(s)	201, 499, 570, 869
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	5 cut(s)	28, 281, 282, 337, 403
BseMI	GCAATG	2 cut(s)	770, 906
BseMII	CTCAG	1 cut(s)	905
BseNI	ACTGG	4 cut(s)	24, 514, 548, 957
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	4 cut(s)	422, 478, 481, 722
BseYI	CCCAGC	1 cut(s)	794
BsiHKAI	GWGCWC	2 cut(s)	139, 579
BsiHKCI	CYCGRG	2 cut(s)	95, 849
BsiSI	CCGG	2 cut(s)	463, 625
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	5 cut(s)	28, 281, 282, 337, 403
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	678
BsmI	GAATGC	1 cut(s)	620
BsoBI	CYCGRG	2 cut(s)	95, 849
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	139, 579
Bsp1407I	TGTACA	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	46, 121, 816
Bsp19I	CCATGG	2 cut(s)	499, 869
BspCNI	CTCAG	1 cut(s)	904
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	511
BspMAI	CTGCAG	1 cut(s)	712
BspPI	GGATC	1 cut(s)	811
BspQI	GCTCTTC	1 cut(s)	720
BspT104I	TTCGAA	1 cut(s)	223
BsrDI	GCAATG	2 cut(s)	770, 906
BsrGI	TGTACA	1 cut(s)	185
BsrI	ACTGG	4 cut(s)	24, 514, 548, 957
BssECI	CCNNGG	4 cut(s)	201, 499, 570, 869
BssMI	GATC	3 cut(s)	46, 121, 816
BssT1I	CCWWGG	3 cut(s)	201, 499, 869
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	3 cut(s)	652, 696, 806
Bst6I	CTCTTC	3 cut(s)	77, 420, 720
BstAUI	TGTACA	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	2 cut(s)	289, 891
BstDSI	CCRYGG	2 cut(s)	499, 869
BstF5I	GGATG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	3 cut(s)	49, 124, 819
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	3 cut(s)	46, 121, 816
BstMWI	GCNNNNNNNGC	1 cut(s)	710
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	2 cut(s)	64, 624
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	4 cut(s)	422, 478, 481, 722
BstX2I	RGATCY	1 cut(s)	816
BstXI	CCANNNNNNTGG	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	816
BsuI	GTATCC	1 cut(s)	855
BtgI	CCRYGG	2 cut(s)	499, 869
BtsCI	GGATG	1 cut(s)	440
BtsI	GCAGTG	1 cut(s)	584
BtsIMutI	CAGTG	5 cut(s)	31, 541, 584, 928, 964
Cac8I	GCNNGC	1 cut(s)	539
CciI	TCATGA	1 cut(s)	384
CfoI	GCGC	1 cut(s)	217
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	6 cut(s)	186, 259, 442, 475, 726, 874
CviAII	CATG	6 cut(s)	361, 385, 449, 500, 821, 870
CviJI	RGCY	8 cut(s)	92, 196, 230, 413, 577, 657, 713, 940
CviKI_1	RGCY	8 cut(s)	92, 196, 230, 413, 577, 657, 713, 940
CviQI	GTAC	6 cut(s)	186, 259, 442, 475, 726, 874
DdeI	CTNAG	2 cut(s)	289, 891
DpnI	GATC	3 cut(s)	48, 123, 818
DpnII	GATC	3 cut(s)	46, 121, 816
DraIII	CACNNNGTG	1 cut(s)	68
Eam1104I	CTCTTC	3 cut(s)	77, 420, 720
EarI	CTCTTC	3 cut(s)	77, 420, 720
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	3 cut(s)	201, 499, 869
Eco24I	GRGCYC	1 cut(s)	579
Eco53kI	GAGCTC	1 cut(s)	577
Eco88I	CYCGRG	2 cut(s)	95, 849
EcoICRI	GAGCTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	3 cut(s)	201, 499, 869
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	3 cut(s)	201, 499, 869
FaeI	CATG	6 cut(s)	364, 388, 452, 503, 824, 873
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	6 cut(s)	360, 384, 448, 499, 820, 869
Fnu4HI	GCNGC	4 cut(s)	411, 492, 495, 711
FokI	GGATG	1 cut(s)	447
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	4 cut(s)	411, 492, 495, 711
FspBI	CTAG	2 cut(s)	128, 964
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	4 cut(s)	411, 492, 495, 711
GsaI	CCCAGC	1 cut(s)	798
HapII	CCGG	2 cut(s)	463, 625
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	6 cut(s)	364, 388, 452, 503, 824, 873
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	366
HpaII	CCGG	2 cut(s)	463, 625
HphI	GGTGA	4 cut(s)	54, 80, 464, 514
Hpy166II	GTNNAC	2 cut(s)	522, 584
Hpy188I	TCNGA	2 cut(s)	679, 894
Hpy188III	TCNNGA	6 cut(s)	157, 370, 385, 507, 751, 851
Hpy8I	GTNNAC	2 cut(s)	522, 584
HpyAV	CCTTC	4 cut(s)	22, 70, 260, 655
HpyCH4III	ACNGT	3 cut(s)	652, 696, 806
HpyCH4V	TGCA	5 cut(s)	316, 350, 541, 704, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	710
HpyF3I	CTNAG	2 cut(s)	289, 891
Hsp92II	CATG	6 cut(s)	364, 388, 452, 503, 824, 873
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	46, 121, 816
LguI	GCTCTTC	1 cut(s)	720
LmnI	GCTCC	2 cut(s)	142, 574
Lsp1109I	GCAGC	4 cut(s)	422, 478, 481, 722
LweI	GCATC	1 cut(s)	303
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	2 cut(s)	128, 964
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	3 cut(s)	48, 123, 818
MboI	GATC	3 cut(s)	46, 121, 816
MboII	GAAGA	5 cut(s)	94, 385, 437, 707, 811
MflI	RGATCY	1 cut(s)	816
MhlI	GDGCHC	2 cut(s)	139, 579
MluCI	AATT	6 cut(s)	354, 479, 669, 681, 738, 855
MlyI	GAGTC	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	884
MroXI	GAANNNNTTC	1 cut(s)	380
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	2 cut(s)	463, 625
MspR9I	CCNGG	2 cut(s)	66, 626
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	710
NciI	CCSGG	1 cut(s)	626
NcoI	CCATGG	2 cut(s)	499, 869
NdeII	GATC	3 cut(s)	46, 121, 816
NlaIII	CATG	6 cut(s)	364, 388, 452, 503, 824, 873
NlaIV	GGNNCC	1 cut(s)	511
NsbI	TGCGCA	1 cut(s)	216
NspV	TTCGAA	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	849
PagI	TCATGA	1 cut(s)	384
PciSI	GCTCTTC	1 cut(s)	720
PctI	GAATGC	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	624
PkrI	GCNGC	4 cut(s)	412, 493, 496, 712
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PsiI	TTATAA	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	794
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	816
RsaI	GTAC	6 cut(s)	187, 260, 443, 476, 727, 875
RsaNI	GTAC	6 cut(s)	186, 259, 442, 475, 726, 874
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	720
SatI	GCNGC	4 cut(s)	411, 492, 495, 711
Sau3AI	GATC	3 cut(s)	46, 121, 816
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	2 cut(s)	66, 626
SduI	GDGCHC	2 cut(s)	139, 579
SexAI	ACCWGGT	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	708
Sfr274I	CTCGAG	1 cut(s)	849
SfuI	TTCGAA	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	849
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	149, 849
SmoI	CTYRAG	2 cut(s)	149, 849
Sse9I	AATT	6 cut(s)	354, 479, 669, 681, 738, 855
SspMI	CTAG	2 cut(s)	128, 964
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	2 cut(s)	64, 624
StyI	CCWWGG	3 cut(s)	201, 499, 869
TaaI	ACNGT	3 cut(s)	652, 696, 806
TaqI	TCGA	2 cut(s)	223, 850
TasI	AATT	6 cut(s)	354, 479, 669, 681, 738, 855
TatI	WGTACW	4 cut(s)	185, 258, 441, 474
TscAI	CASTG	5 cut(s)	31, 548, 591, 928, 964
TseI	GCWGC	4 cut(s)	410, 491, 494, 710
TspDTI	ATGAA	5 cut(s)	17, 312, 373, 401, 437
TspRI	CASTG	5 cut(s)	31, 548, 591, 928, 964
XapI	RAATTY	2 cut(s)	681, 855
XcmI	CCANNNNNNNNNTGG	1 cut(s)	867
XhoI	CTCGAG	1 cut(s)	849
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	2 cut(s)	128, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.