Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005262

Physical Location & Seq

Genomic Coordinates Forward (+)

53411631 .. 53414239

Gene Structure 2609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0361500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCAGCGTCCCCGCTCTTTCTTTCTTCAAGCCCCGCCCTGCGTTTCCCTTCTTCGCCATTCAAGGGAAATGTGAGCAACTTGAGGCCAAGCTTATGTTCAATCCCCTCGCTCAAGACGACTCCGACTCCGACTCCGACTCCGACTCCTCAGAGAAGACAGCTGGTGGTTGTGAACAAGGCGGCCGCGGCGGTAGTCGGGGCTCCGACTGGGAACGTCCGGTTCAGGCTGGACAACTTGGGCCCGCAACCCGGGTCCAGAAAGAAGGGTAAGAGAAAGGGAAGAGGTATTGCTGCTGGGCAAGGCAACAGCTGCGGGTTCGGTATGCGGGGACAGAAGTCCCGGTCCGGACCGGGTGTCCGGCCCGGATTTGAAGGTGGACAGATGCCGCTCTACCGTCGAATTCCCAAGCTCAAGGGAATTGCTGGAGGTATGCATAAGGGGTTGCCTAAATATGTGCCTGTGAACTTGAAAGATATAGAAGACGCAGGGTTTGAAGAAGGAGAAGAAGTTTCGTTAGAGAGTTTGAAGGACAAGGGGTTGATCAACCCTTCGGGGAGAGAGAGGAAACTCCCTTTGAAGATTCTTGGTGATGGGGAACTCAAAGTGAAGCTGAGCTTTAAGGCTCGGGCTTTTTCTGCAGCGGCAAAGGAGAAGCTTGAGGCTGCTGGCTGTAGTCTCACTGTTTTACCGGGCCGGAAGAAGTGGGTAAAGCCATCAGTTGCTAAGAACATTGCCCGTGCTGATGAATACTTTGCCAAGAAAAGAGCAGCCGCAGCTGCTGCTGCTGAAGCACCATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

268

Amino Acids

28.26

Weight (kDa)

10.57

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27A	PF00828	154 - 227	1.8e-15	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14670 AT2G01970
fragaria_vesca	FvH4_4g35870 FvH4_4g35870 FvH4_4g35870 FvH4_4g35870 FvH4_4g35870
malus_domestica	MD13G1014300.v1.1 MD16G1011700.v1.1
prunus_persica	Prupe.1G339100_v2.0.a1
pyrus_communis	pycom13g01240
rosa_chinensis	RchiOBHm_Chr4g0445481
rosa_laevigata	RLG00000001580 RLG00000005738
rosa_multiflora	Rmu_sc0001509.1_g000009 Rmu_sc0010069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231310 Rroxscaffold_5G00385960
rosa_rugosa	Rorug04G0361500 Rorug04G0361600 Rorug07G0246700
rosa_samantha	Rh4AG423000 Rh4BG435000 Rh4CG449900 Rh4DG431300 Rh7AG400600 Rh7BG382100
rosa_wichuraiana	Rw4G036270 Rw7G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	16, 391
AccII	CGCG	1 cut(s)	188
AccIII	TCCGGA	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	65, 251
AgsI	TTSAA	8 cut(s)	30, 64, 102, 374, 472, 497, 529, 580
AhdI	GACNNNNNGTC	1 cut(s)	356
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	8 cut(s)	93, 163, 312, 412, 613, 618, 658, 779
AluI	AGCT	8 cut(s)	93, 163, 312, 412, 613, 618, 658, 779
Alw26I	GTCTC	1 cut(s)	683
AlwNI	CAGNNNCTG	1 cut(s)	782
Ama87I	CYCGRG	2 cut(s)	251, 627
Aor13HI	TCCGGA	1 cut(s)	347
AoxI	GGCC	5 cut(s)	86, 183, 241, 362, 694
ApaI	GGGCCC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	402
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspS9I	GGNCC	7 cut(s)	241, 242, 255, 345, 350, 363, 694
AsuC2I	CCSGG	6 cut(s)	252, 253, 343, 354, 366, 693
AsuHPI	GGTGA	1 cut(s)	602
AvaI	CYCGRG	2 cut(s)	251, 627
AvaII	GGWCC	3 cut(s)	255, 345, 350
BaeGI	GKGCMC	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	205, 245
BbsI	GAAGAC	2 cut(s)	163, 489
BccI	CCATC	3 cut(s)	587, 724, 805
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	6 cut(s)	252, 253, 343, 354, 366, 693
BcoDI	GTCTC	1 cut(s)	683
BfmI	CTRYAG	2 cut(s)	639, 673
BlpI	GCTNAGC	1 cut(s)	614
Bme1390I	CCNGG	6 cut(s)	252, 253, 343, 354, 366, 693
Bme18I	GGWCC	3 cut(s)	255, 345, 350
BmeRI	GACNNNNNGTC	1 cut(s)	356
BmeT110I	CYCGRG	2 cut(s)	251, 627
BmgT120I	GGNCC	7 cut(s)	241, 242, 255, 345, 350, 363, 694
BmiI	GGNNCC	3 cut(s)	204, 243, 256
BmrFI	CCNGG	6 cut(s)	252, 253, 343, 354, 366, 693
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	219
BoxI	GACNNNNGTC	1 cut(s)	337
BpiI	GAAGAC	2 cut(s)	163, 489
BpmI	CTGGAG	1 cut(s)	447
Bpu1102I	GCTNAGC	1 cut(s)	614
BpuEI	CTTGAG	4 cut(s)	98, 103, 398, 680
BpuMI	CCSGG	6 cut(s)	252, 253, 343, 354, 366, 693
BsaJI	CCNNGG	2 cut(s)	186, 251
BsaWI	WCCGGW	2 cut(s)	219, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 251
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	732
BseAI	TCCGGA	1 cut(s)	347
BseDI	CCNNGG	2 cut(s)	186, 251
BseLI	CCNNNNNNNGG	2 cut(s)	65, 251
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	2 cut(s)	164, 605
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	245
BseX3I	CGGCCG	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	5 cut(s)	88, 185, 243, 364, 696
BsiEI	CGRYCG	1 cut(s)	186
BsiHKCI	CYCGRG	2 cut(s)	251, 627
BsiSI	CCGG	9 cut(s)	220, 252, 343, 348, 353, 361, 366, 692, 697
BslFI	GGGAC	2 cut(s)	325, 345
BslI	CCNNNNNNNGG	2 cut(s)	65, 251
BsmAI	GTCTC	1 cut(s)	683
BsmFI	GGGAC	2 cut(s)	325, 345
BsnI	GGCC	5 cut(s)	88, 185, 243, 364, 696
BsoBI	CYCGRG	2 cut(s)	251, 627
Bsp120I	GGGCCC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	205, 245
Bsp13I	TCCGGA	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	543
Bsp1720I	GCTNAGC	1 cut(s)	614
BspANI	GGCC	5 cut(s)	88, 185, 243, 364, 696
BspCNI	CTCAG	2 cut(s)	163, 606
BspEI	TCCGGA	1 cut(s)	347
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	3 cut(s)	204, 243, 256
BspMAI	CTGCAG	1 cut(s)	643
BsrBI	CCGCTC	2 cut(s)	16, 391
BsrDI	GCAATG	1 cut(s)	732
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	186, 251
BssMI	GATC	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	398, 685
Bst6I	CTCTTC	1 cut(s)	277
BstAPI	GCANNNNNTGC	3 cut(s)	312, 782, 800
BstC8I	GCNNGC	2 cut(s)	245, 670
BstDEI	CTNAG	4 cut(s)	150, 614, 726, 804
BstDSI	CCRYGG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	1 cut(s)	546
BstMAI	GTCTC	1 cut(s)	683
BstMBI	GATC	1 cut(s)	543
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	9 cut(s)	188, 312, 638, 776, 779, 782, 785, 791, 800
BstPAI	GACNNNNGTC	1 cut(s)	337
BstSCI	CCNGG	6 cut(s)	250, 251, 341, 352, 364, 691
BstSFI	CTRYAG	2 cut(s)	639, 673
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	1 cut(s)	188
BstV2I	GAAGAC	2 cut(s)	163, 489
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	5 cut(s)	88, 185, 243, 364, 696
BtgI	CCRYGG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	681
Cac8I	GCNNGC	2 cut(s)	245, 670
CaiI	CAGNNNCTG	1 cut(s)	782
CciNI	GCGGCCGC	1 cut(s)	183
Cfr13I	GGNCC	7 cut(s)	241, 242, 255, 345, 350, 363, 694
Cfr42I	CCGCGG	1 cut(s)	189
Cfr9I	CCCGGG	1 cut(s)	251
CpoI	CGGWCCG	2 cut(s)	345, 350
CseI	GACGC	1 cut(s)	494
CspI	CGGWCCG	2 cut(s)	345, 350
DdeI	CTNAG	4 cut(s)	150, 614, 726, 804
DpnI	GATC	1 cut(s)	545
DpnII	GATC	1 cut(s)	543
DriI	GACNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	277
Eam1105I	GACNNNNNGTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	277
EclXI	CGGCCG	1 cut(s)	183
Eco24I	GRGCYC	2 cut(s)	205, 245
Eco47I	GGWCC	3 cut(s)	255, 345, 350
Eco52I	CGGCCG	1 cut(s)	183
Eco88I	CYCGRG	2 cut(s)	251, 627
EcoRI	GAATTC	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	438
EcoT38I	GRGCYC	2 cut(s)	205, 245
FaiI	YATR	6 cut(s)	97, 326, 434, 438, 456, 479
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	2 cut(s)	325, 345
FauI	CCCGC	5 cut(s)	21, 43, 252, 308, 321
FbaI	TGATCA	1 cut(s)	543
FriOI	GRGCYC	2 cut(s)	205, 245
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	5 cut(s)	88, 185, 243, 364, 696
HapII	CCGG	9 cut(s)	220, 252, 343, 348, 353, 361, 366, 692, 697
HgaI	GACGC	1 cut(s)	494
HindIII	AAGCTT	2 cut(s)	91, 656
HinfI	GANTC	6 cut(s)	121, 127, 133, 139, 145, 583
HpaII	CCGG	9 cut(s)	220, 252, 343, 348, 353, 361, 366, 692, 697
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	3 cut(s)	175, 380, 466
Hpy188I	TCNGA	6 cut(s)	126, 132, 138, 144, 153, 207
Hpy188III	TCNNGA	3 cut(s)	115, 258, 348
Hpy8I	GTNNAC	3 cut(s)	175, 380, 466
Hpy99I	CGWCG	1 cut(s)	402
HpyAV	CCTTC	6 cut(s)	60, 259, 368, 494, 523, 561
HpyCH4III	ACNGT	2 cut(s)	398, 685
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	436, 641
HpyF10VI	GCNNNNNNNGC	9 cut(s)	188, 312, 638, 776, 779, 782, 785, 791, 800
HpyF3I	CTNAG	4 cut(s)	150, 614, 726, 804
HpySE526I	ACGT	1 cut(s)	216
Kpn2I	TCCGGA	1 cut(s)	347
Ksp22I	TGATCA	1 cut(s)	543
KspI	CCGCGG	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	543
LmnI	GCTCC	1 cut(s)	208
LweI	GCATC	1 cut(s)	375
MaeII	ACGT	1 cut(s)	216
MalI	GATC	1 cut(s)	545
MbiI	CCGCTC	2 cut(s)	16, 391
MboI	GATC	1 cut(s)	543
MboII	GAAGA	9 cut(s)	18, 45, 168, 294, 494, 509, 518, 592, 712
MhlI	GDGCHC	2 cut(s)	205, 245
MluCI	AATT	2 cut(s)	402, 420
MlyI	GAGTC	5 cut(s)	115, 121, 127, 133, 139
MmeI	TCCRAC	5 cut(s)	149, 155, 161, 167, 230
MnlI	CCTC	7 cut(s)	78, 118, 159, 278, 422, 558, 655
Mph1103I	ATGCAT	1 cut(s)	438
MroI	TCCGGA	1 cut(s)	347
MseI	TTAA	1 cut(s)	621
MspA1I	CMGCKG	5 cut(s)	163, 188, 312, 644, 779
MspI	CCGG	9 cut(s)	220, 252, 343, 348, 353, 361, 366, 692, 697
MspR9I	CCNGG	6 cut(s)	252, 253, 343, 354, 366, 693
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	9 cut(s)	188, 312, 638, 776, 779, 782, 785, 791, 800
NciI	CCSGG	6 cut(s)	252, 253, 343, 354, 366, 693
NdeII	GATC	1 cut(s)	543
NlaIV	GGNNCC	3 cut(s)	204, 243, 256
NotI	GCGGCCGC	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	583
PleI	GAGTC	5 cut(s)	115, 121, 127, 133, 139
PpsI	GAGTC	5 cut(s)	115, 121, 127, 133, 139
PshAI	GACNNNNGTC	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	296
PspN4I	GGNNCC	3 cut(s)	204, 243, 256
PspOMI	GGGCCC	1 cut(s)	241
PspPI	GGNCC	7 cut(s)	241, 242, 255, 345, 350, 363, 694
PstI	CTGCAG	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	782
PvuII	CAGCTG	3 cut(s)	163, 312, 779
Rsr2I	CGGWCCG	2 cut(s)	345, 350
RsrII	CGGWCCG	2 cut(s)	345, 350
SacII	CCGCGG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	621
Sau3AI	GATC	1 cut(s)	543
Sau96I	GGNCC	7 cut(s)	241, 242, 255, 345, 350, 363, 694
SchI	GAGTC	5 cut(s)	115, 121, 127, 133, 139
ScrFI	CCNGG	6 cut(s)	252, 253, 343, 354, 366, 693
SduI	GDGCHC	2 cut(s)	205, 245
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	2 cut(s)	639, 673
Sfr303I	CCGCGG	1 cut(s)	189
SgrBI	CCGCGG	1 cut(s)	189
SinI	GGWCC	3 cut(s)	255, 345, 350
SmaI	CCCGGG	1 cut(s)	253
SmlI	CTYRAG	4 cut(s)	82, 113, 413, 659
SmoI	CTYRAG	4 cut(s)	82, 113, 413, 659
Sse9I	AATT	2 cut(s)	402, 420
StyD4I	CCNGG	6 cut(s)	250, 251, 341, 352, 364, 691
TaaI	ACNGT	2 cut(s)	398, 685
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	400
TasI	AATT	2 cut(s)	402, 420
TauI	GCSGC	6 cut(s)	185, 188, 191, 391, 647, 776
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	1 cut(s)	688
TspDTI	ATGAA	1 cut(s)	762
TspMI	CCCGGG	1 cut(s)	251
TspRI	CASTG	1 cut(s)	688
VpaK11BI	GGWCC	3 cut(s)	255, 345, 350
XapI	RAATTY	1 cut(s)	402
XmaI	CCCGGG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.