Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005262

Physical Location & Seq

Genomic Coordinates Reverse (-)

48953871 .. 48954185

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTACTATGCCGACTTGCCCATCTGGGGGTTCTTAGGAAAGCTTGACAAGGAAGGAAAAACTGACCCAAATATTTCCTGTACAAGCACATCCAATTTGAAATTCTATACAATAAAGAGCGTTTGGCGCCAAGATGGATCCTCATTTGGTGTGGACTTGACAGAGGACAAGGACGCTGATGCACATTTCATCTACACTGTGAAATGGAGAGACACAAATATTCCATTTGAGAATAGAATCTTCTTCACTGCCACATCACTTGGAAATTCATTGGTTCTCAATCATAAATTCCTTGCGTCACAGTTCTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

104

Amino Acids

11.93

Weight (kDa)

6.04

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14670 AT2G01970
fragaria_vesca	FvH4_4g35870 FvH4_4g35870 FvH4_4g35870 FvH4_4g35870 FvH4_4g35870
malus_domestica	MD13G1014300.v1.1 MD16G1011700.v1.1
prunus_persica	Prupe.1G339100_v2.0.a1
pyrus_communis	pycom13g01240
rosa_chinensis	RchiOBHm_Chr4g0445481
rosa_laevigata	RLG00000001580 RLG00000005738
rosa_multiflora	Rmu_sc0001509.1_g000009 Rmu_sc0010069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231310 Rroxscaffold_5G00385960
rosa_rugosa	Rorug04G0361500 Rorug04G0361600 Rorug07G0246700
rosa_samantha	Rh4AG423000 Rh4BG435000 Rh4CG449900 Rh4DG431300 Rh7AG400600 Rh7BG382100
rosa_wichuraiana	Rw4G036270 Rw7G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AclWI	GGATC	2 cut(s)	132, 145
AcsI	RAATTY	3 cut(s)	101, 265, 287
AcyI	GRCGYC	1 cut(s)	127
AfaI	GTAC	2 cut(s)	5, 82
AfiI	CCNNNNNNNGG	2 cut(s)	26, 27
AgsI	TTSAA	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	132, 145
ApoI	RAATTY	3 cut(s)	101, 265, 287
AspLEI	GCGC	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	126
BccI	CCATC	2 cut(s)	29, 128
BcoDI	GTCTC	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	128, 139
BmsI	GCATC	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 27
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	26, 27
BshNI	GGYRCC	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	26, 27
BsmAI	GTCTC	1 cut(s)	204
Bsp1407I	TGTACA	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	128, 139
BspPI	GGATC	2 cut(s)	132, 145
BspT107I	GGYRCC	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	80
BssMI	GATC	1 cut(s)	137
BssNI	GRCGYC	1 cut(s)	127
Bst4CI	ACNGT	2 cut(s)	199, 303
BstACI	GRCGYC	1 cut(s)	127
BstAUI	TGTACA	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	1 cut(s)	140
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	195, 246
CfoI	GCGC	1 cut(s)	129
CseI	GACGC	2 cut(s)	182, 285
Csp6I	GTAC	2 cut(s)	4, 81
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviJI	RGCY	1 cut(s)	43
CviKI_1	RGCY	1 cut(s)	43
CviQI	GTAC	2 cut(s)	4, 81
DdeI	CTNAG	1 cut(s)	34
DinI	GGCGCC	1 cut(s)	128
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
EgeI	GGCGCC	1 cut(s)	128
EheI	GGCGCC	1 cut(s)	128
FaiI	YATR	3 cut(s)	9, 108, 285
FokI	GGATG	1 cut(s)	76
GlaI	GCGC	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	130
HgaI	GACGC	2 cut(s)	182, 285
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	199, 303
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	127
HspAI	GCGC	1 cut(s)	127
KasI	GGCGCC	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	137
LpnPI	CCDG	2 cut(s)	10, 91
LweI	GCATC	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	297
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	2 cut(s)	232, 235
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	4 cut(s)	94, 101, 265, 287
Mly113I	GGCGCC	1 cut(s)	127
MnlI	CCTC	2 cut(s)	151, 157
MwoI	GCNNNNNNNGC	1 cut(s)	126
NarI	GGCGCC	1 cut(s)	127
NdeII	GATC	1 cut(s)	137
NlaIV	GGNNCC	2 cut(s)	128, 139
NmuCI	GTSAC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	237
PluTI	GGCGCC	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	128, 139
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	2 cut(s)	5, 82
RsaNI	GTAC	2 cut(s)	4, 81
Sau3AI	GATC	1 cut(s)	137
SetI	ASST	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	169
SfoI	GGCGCC	1 cut(s)	128
Sse9I	AATT	4 cut(s)	94, 101, 265, 287
SspDI	GGCGCC	1 cut(s)	126
SspI	AATATT	2 cut(s)	73, 220
TaaI	ACNGT	2 cut(s)	199, 303
TasI	AATT	4 cut(s)	94, 101, 265, 287
TatI	WGTACW	2 cut(s)	3, 80
TfiI	GAWTC	1 cut(s)	237
TscAI	CASTG	2 cut(s)	202, 253
TseFI	GTSAC	1 cut(s)	297
Tsp45I	GTSAC	1 cut(s)	297
TspDTI	ATGAA	2 cut(s)	178, 258
TspRI	CASTG	2 cut(s)	202, 253
XapI	RAATTY	3 cut(s)	101, 265, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.