Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005262

Physical Location & Seq

Genomic Coordinates Forward (+)

16436471 .. 16439466

Gene Structure 2996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGACAGAGGACAAGGACGTTGATGCACATTTCATGTACACTGTGAAATGGAGAGAGACAAATATTCCATTTGAGAATAGAATGGATAAGTACTCACAGTCTTCTTCACTGCCACATCACTTGGAAATTCATTGGTTCTCAATCATAAATTCCTTGTGTCACAGTTCTCATTTTGACGGGTTTTCTTGCAACAATTCTCATGCGAGTCTTGAAGAACGATTTCATGAAGTGAAATTTTGTATGCCCAAGATGAGGAAGCAGCCGATGACCAAGAAGACACAGGATAGAAGTACATTCATGGTGATGTTTTCCGGTTTCCCAAGTACAAATTGTTGTTTGCTGCTGCCCATGGTTCTGGAACCCAGTTGTTCACCCTCTCAGGGTTCATTTTTATGCTTGCACTGGTCGTTGTATTTTATCCATACAACCGAGGAGCTCTGTTCACTGCTCTTGTGGTCATATACGCACTCACATCTGGCATTGCGGGATATACTTCAACCTCTTTCTACTTTCAGCTTGAAGGGACAAATTGGGTCAGAAATTTATTACTTACTGGTTGCCTTTTTTGTGAGCCTCTGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

194

Amino Acids

22.58

Weight (kDa)

6.44

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP70	PF02990	4 - 54	4.1e-11	Endomembrane protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14670 AT2G01970
fragaria_vesca	FvH4_4g35870 FvH4_4g35870 FvH4_4g35870 FvH4_4g35870 FvH4_4g35870
malus_domestica	MD13G1014300.v1.1 MD16G1011700.v1.1
prunus_persica	Prupe.1G339100_v2.0.a1
pyrus_communis	pycom13g01240
rosa_chinensis	RchiOBHm_Chr4g0445481
rosa_laevigata	RLG00000001580 RLG00000005738
rosa_multiflora	Rmu_sc0001509.1_g000009 Rmu_sc0010069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231310 Rroxscaffold_5G00385960
rosa_rugosa	Rorug04G0361500 Rorug04G0361600 Rorug07G0246700
rosa_samantha	Rh4AG423000 Rh4BG435000 Rh4CG449900 Rh4DG431300 Rh7AG400600 Rh7BG382100
rosa_wichuraiana	Rw4G036270 Rw7G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	484
AcsI	RAATTY	4 cut(s)	126, 148, 233, 540
AfaI	GTAC	4 cut(s)	38, 92, 292, 325
AfiI	CCNNNNNNNGG	2 cut(s)	252, 380
AgsI	TTSAA	3 cut(s)	212, 497, 520
AluBI	AGCT	2 cut(s)	436, 516
AluI	AGCT	2 cut(s)	436, 516
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	50
ApeKI	GCWGC	3 cut(s)	259, 340, 343
ApoI	RAATTY	4 cut(s)	126, 148, 233, 540
Asp700I	GAANNNNTTC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	313, 363
BanII	GRGCYC	1 cut(s)	438
BbsI	GAAGAC	2 cut(s)	93, 281
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	271, 327, 330
BcoDI	GTCTC	1 cut(s)	50
BisI	GCNGC	3 cut(s)	260, 341, 344
BlsI	GCNGC	3 cut(s)	261, 342, 345
BmcAI	AGTACT	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	360
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	2 cut(s)	93, 281
BsaJI	CCNNGG	2 cut(s)	348, 429
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 380
Bse1I	ACTGG	3 cut(s)	363, 407, 558
Bse3DI	GCAATG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	348, 429
BseLI	CCNNNNNNNGG	2 cut(s)	252, 380
BseMI	GCAATG	1 cut(s)	479
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	3 cut(s)	363, 407, 558
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	3 cut(s)	271, 327, 330
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	2 cut(s)	252, 380
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp1407I	TGTACA	1 cut(s)	36
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	1 cut(s)	484
BspCNI	CTCAG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	479
BsrGI	TGTACA	1 cut(s)	36
BsrI	ACTGG	3 cut(s)	363, 407, 558
BssECI	CCNNGG	2 cut(s)	348, 429
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	43, 99, 164
BstAUI	TGTACA	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	378
BstDSI	CCRYGG	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	271, 327, 330
BstV2I	GAAGAC	2 cut(s)	93, 281
BstXI	CCANNNNNNTGG	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	348
BtsI	GCAGTG	2 cut(s)	107, 443
BtsIMutI	CAGTG	4 cut(s)	39, 107, 400, 443
Cac8I	GCNNGC	1 cut(s)	398
CciI	TCATGA	1 cut(s)	223
Csp6I	GTAC	4 cut(s)	37, 91, 291, 324
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	5 cut(s)	34, 200, 224, 298, 349
CviJI	RGCY	4 cut(s)	262, 436, 516, 573
CviKI_1	RGCY	4 cut(s)	262, 436, 516, 573
CviQI	GTAC	4 cut(s)	37, 91, 291, 324
DdeI	CTNAG	1 cut(s)	378
Ecl136II	GAGCTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	5 cut(s)	37, 203, 227, 301, 352
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	5 cut(s)	33, 199, 223, 297, 348
FauI	CCCGC	1 cut(s)	477
Fnu4HI	GCNGC	3 cut(s)	260, 341, 344
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	3 cut(s)	260, 341, 344
GluI	GCNGC	3 cut(s)	260, 341, 344
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	5 cut(s)	37, 203, 227, 301, 352
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	2 cut(s)	313, 363
Hpy166II	GTNNAC	3 cut(s)	39, 371, 443
Hpy188I	TCNGA	1 cut(s)	538
Hpy188III	TCNNGA	4 cut(s)	209, 224, 356, 582
Hpy8I	GTNNAC	3 cut(s)	39, 371, 443
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	3 cut(s)	43, 99, 164
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	26, 189, 400
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	5 cut(s)	37, 203, 227, 301, 352
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	8 cut(s)	266, 325, 341, 365, 376, 388, 461, 539
Lsp1109I	GCAGC	3 cut(s)	271, 327, 330
LweI	GCATC	1 cut(s)	13
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	158
MboII	GAAGA	4 cut(s)	93, 96, 224, 286
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	7 cut(s)	126, 148, 193, 233, 328, 528, 540
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	5 cut(s)	246, 385, 424, 510, 584
MroXI	GAANNNNTTC	1 cut(s)	219
MslI	CAYNNNNRTG	2 cut(s)	302, 391
MspI	CCGG	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	348
NlaIII	CATG	5 cut(s)	37, 203, 227, 301, 352
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	158
PagI	TCATGA	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	261, 342, 345
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	360
RsaI	GTAC	4 cut(s)	38, 92, 292, 325
RsaNI	GTAC	4 cut(s)	37, 91, 291, 324
RseI	CAYNNNNRTG	2 cut(s)	302, 391
SacI	GAGCTC	1 cut(s)	438
SatI	GCNGC	3 cut(s)	260, 341, 344
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	4 cut(s)	21, 438, 502, 518
SfaNI	GCATC	1 cut(s)	13
SmiMI	CAYNNNNRTG	2 cut(s)	302, 391
Sse9I	AATT	7 cut(s)	126, 148, 193, 233, 328, 528, 540
SsiI	CCGC	1 cut(s)	484
SspI	AATATT	1 cut(s)	64
SstI	GAGCTC	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	43, 99, 164
TaiI	ACGT	1 cut(s)	21
TasI	AATT	7 cut(s)	126, 148, 193, 233, 328, 528, 540
TatI	WGTACW	4 cut(s)	36, 90, 290, 323
TscAI	CASTG	4 cut(s)	46, 114, 407, 450
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	259, 340, 343
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	6 cut(s)	22, 119, 212, 240, 286, 375
TspRI	CASTG	4 cut(s)	46, 114, 407, 450
XapI	RAATTY	4 cut(s)	126, 148, 233, 540
XmnI	GAANNNNTTC	1 cut(s)	219
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.