Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005262

Physical Location & Seq

Genomic Coordinates Reverse (-)

52697465 .. 52708515

Gene Structure 11051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG400600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGATCTGGGGTGGAGGTTTCGAATTGATGAGGCAGAGATGGTTCCCAGGAATCGGGACTCACTGGTGGTCTCTGTGGGGGTGTTCTTCGGATCGGACGGCTCCGATCACCGCTACAATGAAGGCGACGTCGTCCCCCTCTACGCCAATAAGGTCGGCCCCTTCCACAACCCCAGATTTTCCAAACACGCCCTTGCCCTTGCTGACGTTGTGCTAAATGGAGATCGTCTAGTGAGTGCTCCTTATAAACTTGAGTTCAGGAAAGAGAAAGACACCAGAGTTCTGACCAAGGAGGAAGTTGCGCAGTTTCGAAAGGATTACTACCTTCAAATGTACTATGGCGACTTGCCCATCTGGTGGTTCTTAGGAAAGGTTGACGAGGAAGGAAAAACTGACCCCAACACAGTGTTAATTTTTATGCTTGCACTGGTCGGTGTATTTTATCCATACAACCGAGGAGCTCTGTTCACTGCTCTTGTGGTCATATACGCACTCACATCTGGCATTGCGGGATATACTTCAACCTCTTTCTACTGTCAGCTTGAAGGGATAAATTGGTGCTGTGCAACTGCAGCTCTTCCTTTTGGTACTATTGTGGTAATTGTCCTTATCTGGACATTGGTAACAGCACCATTGCTCCTCTTGGGTGGTATTGCTGGGAAGAACAGTAAGGTTGAGATCCATGCTTCTTGTCGCACCACAAAGTATCCTCGAGAAATTCCAACTCTGCCATGGTACAGGACAACTGTTCCTCAGATGGCAATGACAGGATTTCTCCCTTTCAGTGCGATTTACATTGAGCTTTACTACATATTTGCCAGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

275

Amino Acids

31.05

Weight (kDa)

6.9

Isoelectric Point (pI)

25.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP70	PF02990	135 - 186	3.8e-10	Endomembrane protein 70
EMP70	PF02990	189 - 275	6.5e-27	Endomembrane protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14670 AT2G01970
fragaria_vesca	FvH4_4g35870 FvH4_4g35870 FvH4_4g35870 FvH4_4g35870 FvH4_4g35870
malus_domestica	MD13G1014300.v1.1 MD16G1011700.v1.1
prunus_persica	Prupe.1G339100_v2.0.a1
pyrus_communis	pycom13g01240
rosa_chinensis	RchiOBHm_Chr4g0445481
rosa_laevigata	RLG00000001580 RLG00000005738
rosa_multiflora	Rmu_sc0001509.1_g000009 Rmu_sc0010069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231310 Rroxscaffold_5G00385960
rosa_rugosa	Rorug04G0361500 Rorug04G0361600 Rorug07G0246700
rosa_samantha	Rh4AG423000 Rh4BG435000 Rh4CG449900 Rh4DG431300 Rh7AG400600 Rh7BG382100
rosa_wichuraiana	Rw4G036270 Rw7G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AatII	GACGTC	1 cut(s)	132
Acc16I	TGCGCA	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	357
AciI	CCGC	2 cut(s)	112, 509
AclWI	GGATC	3 cut(s)	12, 100, 673
AcsI	RAATTY	1 cut(s)	717
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	3 cut(s)	335, 589, 737
AfiI	CCNNNNNNNGG	2 cut(s)	54, 357
AgsI	TTSAA	3 cut(s)	329, 522, 545
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	461, 541, 575, 802
AluI	AGCT	4 cut(s)	461, 541, 575, 802
Alw21I	GWGCWC	2 cut(s)	241, 463
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	3 cut(s)	12, 100, 673
Ama87I	CYCGRG	1 cut(s)	711
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	101
AsuII	TTCGAA	2 cut(s)	22, 310
AvaI	CYCGRG	1 cut(s)	711
BaeI	ACNNNNGTAYC	2 cut(s)	579, 612
BanII	GRGCYC	1 cut(s)	463
Bbv12I	GWGCWC	2 cut(s)	241, 463
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	3 cut(s)	34, 359, 751
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	49
BciVI	GTATCC	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	230, 826
BfmI	CTRYAG	1 cut(s)	570
BfuI	GTATCC	1 cut(s)	717
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	711
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	3 cut(s)	45, 103, 160
BmrFI	CCNGG	1 cut(s)	49
Bpu14I	TTCGAA	2 cut(s)	22, 310
BpuEI	CTTGAG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	4 cut(s)	47, 288, 454, 731
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 357
Bse1I	ACTGG	3 cut(s)	69, 432, 819
Bse3DI	GCAATG	3 cut(s)	504, 632, 768
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	4 cut(s)	47, 288, 454, 731
BseLI	CCNNNNNNNGG	2 cut(s)	54, 357
BseMI	GCAATG	3 cut(s)	504, 632, 768
BseMII	CTCAG	1 cut(s)	767
BseNI	ACTGG	3 cut(s)	69, 432, 819
BseRI	GAGGAG	2 cut(s)	471, 629
BseXI	GCAGC	1 cut(s)	584
BseYI	CCCAGC	1 cut(s)	656
BshFI	GGCC	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	241, 463
BsiHKCI	CYCGRG	1 cut(s)	711
BslFI	GGGAC	2 cut(s)	71, 119
BslI	CCNNNNNNNGG	2 cut(s)	54, 357
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	71, 119
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	711
Bsp119I	TTCGAA	2 cut(s)	22, 310
Bsp1286I	GDGCHC	2 cut(s)	241, 463
Bsp143I	GATC	5 cut(s)	4, 92, 106, 223, 678
Bsp19I	CCATGG	1 cut(s)	731
BspACI	CCGC	2 cut(s)	112, 509
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	766
BspLI	GGNNCC	3 cut(s)	45, 103, 160
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	3 cut(s)	12, 100, 673
BspQI	GCTCTTC	1 cut(s)	582
BspT104I	TTCGAA	2 cut(s)	22, 310
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	3 cut(s)	504, 632, 768
BsrI	ACTGG	3 cut(s)	69, 432, 819
BssECI	CCNNGG	4 cut(s)	47, 288, 454, 731
BssMI	GATC	5 cut(s)	4, 92, 106, 223, 678
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	2 cut(s)	288, 731
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	4 cut(s)	406, 536, 668, 748
Bst6I	CTCTTC	1 cut(s)	582
BstACI	GRCGYC	1 cut(s)	129
BstBI	TTCGAA	2 cut(s)	22, 310
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	364, 753
BstDSI	CCRYGG	1 cut(s)	731
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	5 cut(s)	7, 95, 109, 226, 681
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	5 cut(s)	4, 92, 106, 223, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	1 cut(s)	584
BstX2I	RGATCY	2 cut(s)	4, 678
BstYI	RGATCY	2 cut(s)	4, 678
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	731
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	6 cut(s)	62, 411, 425, 468, 790, 826
Cac8I	GCNNGC	1 cut(s)	423
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	158
Csp6I	GTAC	3 cut(s)	334, 588, 736
CviAII	CATG	2 cut(s)	683, 732
CviJI	RGCY	6 cut(s)	102, 159, 461, 541, 575, 802
CviKI_1	RGCY	6 cut(s)	102, 159, 461, 541, 575, 802
CviQI	GTAC	3 cut(s)	334, 588, 736
DdeI	CTNAG	2 cut(s)	364, 753
DpnI	GATC	5 cut(s)	6, 94, 108, 225, 680
DpnII	GATC	5 cut(s)	4, 92, 106, 223, 678
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Ecl136II	GAGCTC	1 cut(s)	461
Eco130I	CCWWGG	2 cut(s)	288, 731
Eco24I	GRGCYC	1 cut(s)	463
Eco31I	GGTCTC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	711
EcoICRI	GAGCTC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	2 cut(s)	288, 731
EcoT38I	GRGCYC	1 cut(s)	463
ErhI	CCWWGG	2 cut(s)	288, 731
FaeI	CATG	2 cut(s)	686, 735
FaqI	GGGAC	2 cut(s)	71, 119
FatI	CATG	2 cut(s)	682, 731
FauI	CCCGC	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	573
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	2 cut(s)	230, 826
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	1 cut(s)	573
GsaI	CCCAGC	1 cut(s)	660
HaeIII	GGCC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	304
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	686, 735
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	2 cut(s)	52, 59
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	2 cut(s)	376, 468
Hpy188I	TCNGA	5 cut(s)	92, 97, 106, 285, 756
Hpy188III	TCNNGA	4 cut(s)	56, 259, 613, 713
Hpy8I	GTNNAC	2 cut(s)	376, 468
Hpy99I	CGWCG	2 cut(s)	131, 134
HpyAV	CCTTC	5 cut(s)	116, 172, 335, 377, 539
HpyCH4III	ACNGT	4 cut(s)	406, 536, 668, 748
HpyCH4IV	ACGT	2 cut(s)	129, 207
HpyCH4V	TGCA	3 cut(s)	425, 566, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	2 cut(s)	364, 753
HpySE526I	ACGT	2 cut(s)	129, 207
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	686, 735
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	5 cut(s)	4, 92, 106, 223, 678
LguI	GCTCTTC	1 cut(s)	582
LmnI	GCTCC	4 cut(s)	107, 244, 458, 642
Lsp1109I	GCAGC	1 cut(s)	584
MaeI	CTAG	2 cut(s)	230, 826
MaeII	ACGT	2 cut(s)	129, 207
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	5 cut(s)	6, 94, 108, 225, 680
MboI	GATC	5 cut(s)	4, 92, 106, 223, 678
MboII	GAAGA	3 cut(s)	79, 569, 673
MflI	RGATCY	2 cut(s)	4, 678
MhlI	GDGCHC	2 cut(s)	241, 463
MluCI	AATT	5 cut(s)	24, 411, 553, 600, 717
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	746
MseI	TTAA	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	572
NcoI	CCATGG	1 cut(s)	731
NdeII	GATC	5 cut(s)	4, 92, 106, 223, 678
NlaIII	CATG	2 cut(s)	686, 735
NlaIV	GGNNCC	3 cut(s)	45, 103, 160
NsbI	TGCGCA	1 cut(s)	303
NspV	TTCGAA	2 cut(s)	22, 310
PaeR7I	CTCGAG	1 cut(s)	711
PciSI	GCTCTTC	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	52
PflFI	GACNNNGTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	357
PkrI	GCNGC	1 cut(s)	574
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	656
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	3 cut(s)	45, 103, 160
PspPI	GGNCC	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	574
PsuI	RGATCY	2 cut(s)	4, 678
PsyI	GACNNNGTC	1 cut(s)	131
RsaI	GTAC	3 cut(s)	335, 589, 737
RsaNI	GTAC	3 cut(s)	334, 588, 736
SacI	GAGCTC	1 cut(s)	463
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	5 cut(s)	4, 92, 106, 223, 678
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	241, 463
SfcI	CTRYAG	1 cut(s)	570
Sfr274I	CTCGAG	1 cut(s)	711
SfuI	TTCGAA	2 cut(s)	22, 310
SlaI	CTCGAG	1 cut(s)	711
SmlI	CTYRAG	2 cut(s)	251, 711
SmoI	CTYRAG	2 cut(s)	251, 711
Sse9I	AATT	5 cut(s)	24, 411, 553, 600, 717
SsiI	CCGC	2 cut(s)	112, 509
SspMI	CTAG	2 cut(s)	230, 826
SstI	GAGCTC	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	288, 731
TaaI	ACNGT	4 cut(s)	406, 536, 668, 748
TaiI	ACGT	2 cut(s)	132, 210
TaqI	TCGA	3 cut(s)	22, 310, 712
TasI	AATT	5 cut(s)	24, 411, 553, 600, 717
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	6 cut(s)	69, 411, 432, 475, 790, 826
TseI	GCWGC	1 cut(s)	572
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	6 cut(s)	69, 411, 432, 475, 790, 826
Tth111I	GACNNNGTC	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	717
XcmI	CCANNNNNNNNNTGG	1 cut(s)	729
XhoI	CTCGAG	1 cut(s)	711
XspI	CTAG	2 cut(s)	230, 826
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.