Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018646

Physical Location & Seq

Genomic Coordinates Reverse (-)

19000019 .. 19000960

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001675

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGACAGACTTACAGGTTCAGTTTCTTCAGGAATGCGAGGACGAGTTCAAGGTCAGCCGCGACTCGGGGCTGTCGGAGGAGGAAGTCGAGAAGCGCCGGGCGGTGTACGGATGGAACGAACTGGAGAAGCACGAGGATCAGTCGATCCTGAAGCTGCTGATGGATCAGCTCAGCGACACGCTCGTCCGGGTTCTGTTGTTCGCGGCAGTTCTCTCCTTCGTTCTCGCATGGTACCGATCTGTTGGTCGTCTGGGATCGGAGATTGCTCTGATCTGGGTTGGTCGTCTGAGATCGGAGATCGCTCTGATCTGTTGGTCGTCTGGGATCGGAGATCACTCTGATCTGTTGACTATTTGGGGTCTAGCTCTGATCTGGGTTCGCTCCGATCTGTTGCTCAATTGGGTTCTAGCAATTCTCACCTGTGGTATATATGGTGTGTGGTGTGAGGATGAGAATTGCAAAGTGATGGAGACTCGATCAGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

163

Amino Acids

18.61

Weight (kDa)

4.63

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	9 - 72	1.7e-18	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018646)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001675 RLG00000013678 RLG00000015518
rosa_multiflora	Rmu_sc0000951.1_g000005 Rmu_sc0001565.1_g000049
rosa_roxburghii	Rroxscaffold_2G00085890 Rroxscaffold_4G00289110
rosa_samantha	Rh4CG009900 Rh5AG030000 Rh7CG429800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	231
AccII	CGCG	2 cut(s)	60, 203
AciI	CCGC	3 cut(s)	58, 101, 203
AclWI	GGATC	5 cut(s)	139, 144, 171, 262, 332
AcuI	CTGAAG	2 cut(s)	11, 170
AfaI	GTAC	2 cut(s)	107, 233
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	49
AluBI	AGCT	3 cut(s)	154, 169, 365
AluI	AGCT	3 cut(s)	154, 169, 365
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	5 cut(s)	139, 144, 171, 262, 332
Ama87I	CYCGRG	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	154
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	96
AsuC2I	CCSGG	2 cut(s)	98, 188
AsuHPI	GGTGA	1 cut(s)	409
AvaI	CYCGRG	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	3 cut(s)	105, 154, 460
BcnI	CCSGG	2 cut(s)	98, 188
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	3 cut(s)	362, 407, 487
BfoI	RGCGCY	1 cut(s)	97
BisI	GCNGC	3 cut(s)	58, 155, 204
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	3 cut(s)	59, 156, 205
Bme1390I	CCNGG	2 cut(s)	98, 188
BmeT110I	CYCGRG	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	2 cut(s)	98, 188
BpmI	CTGGAG	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	170
BpuMI	CCSGG	2 cut(s)	98, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	126
BseGI	GGATG	2 cut(s)	116, 454
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	184, 278
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	141
Bsh1236I	CGCG	2 cut(s)	60, 203
BshNI	GGYRCC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	97, 187
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	64
Bsp1720I	GCTNAGC	1 cut(s)	170
BspACI	CCGC	3 cut(s)	58, 101, 203
BspCNI	CTCAG	2 cut(s)	183, 279
BspFNI	CGCG	2 cut(s)	60, 203
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	5 cut(s)	139, 144, 171, 262, 332
BspT107I	GGYRCC	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	170, 287
BstF5I	GGATG	2 cut(s)	116, 454
BstFNI	CGCG	2 cut(s)	60, 203
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	96, 186
BstUI	CGCG	2 cut(s)	60, 203
BstV1I	GCAGC	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	116, 454
CfoI	GCGC	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	106, 232
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	5 cut(s)	57, 70, 154, 169, 365
CviKI_1	RGCY	5 cut(s)	57, 70, 154, 169, 365
CviQI	GTAC	2 cut(s)	106, 232
DdeI	CTNAG	2 cut(s)	170, 287
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
Eco57I	CTGAAG	2 cut(s)	11, 170
Eco88I	CYCGRG	1 cut(s)	64
FaeI	CATG	1 cut(s)	231
FaiI	YATR	4 cut(s)	229, 428, 430, 432
FatI	CATG	1 cut(s)	227
Fnu4HI	GCNGC	3 cut(s)	58, 155, 204
FokI	GGATG	2 cut(s)	123, 461
Fsp4HI	GCNGC	3 cut(s)	58, 155, 204
FspBI	CTAG	3 cut(s)	362, 407, 487
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	3 cut(s)	58, 155, 204
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	97
HapII	CCGG	2 cut(s)	97, 187
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HinfI	GANTC	2 cut(s)	62, 472
HpaII	CCGG	2 cut(s)	97, 187
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	106, 348
Hpy188III	TCNNGA	3 cut(s)	29, 88, 148
Hpy8I	GTNNAC	2 cut(s)	106, 348
HpyAV	CCTTC	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	459
HpyF3I	CTNAG	2 cut(s)	170, 287
Hsp92II	CATG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	386
Lsp1109I	GCAGC	1 cut(s)	141
MaeI	CTAG	3 cut(s)	362, 407, 487
MboII	GAAGA	1 cut(s)	17
MfeI	CAATTG	1 cut(s)	397
MluCI	AATT	3 cut(s)	397, 411, 454
MlyI	GAGTC	2 cut(s)	56, 466
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	31, 70, 73, 127, 439
MspI	CCGG	2 cut(s)	97, 187
MspR9I	CCNGG	2 cut(s)	98, 188
MunI	CAATTG	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	38
MvnI	CGCG	2 cut(s)	60, 203
NciI	CCSGG	2 cut(s)	98, 188
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	59, 156, 205
PleI	GAGTC	2 cut(s)	56, 466
PpsI	GAGTC	2 cut(s)	56, 466
PspN4I	GGNNCC	1 cut(s)	233
RsaI	GTAC	2 cut(s)	107, 233
RsaNI	GTAC	2 cut(s)	106, 232
SatI	GCNGC	3 cut(s)	58, 155, 204
SchI	GAGTC	2 cut(s)	56, 466
ScrFI	CCNGG	2 cut(s)	98, 188
SetI	ASST	6 cut(s)	18, 54, 156, 171, 367, 422
Sse9I	AATT	3 cut(s)	397, 411, 454
SsiI	CCGC	3 cut(s)	58, 101, 203
SspMI	CTAG	3 cut(s)	362, 407, 487
StyD4I	CCNGG	2 cut(s)	96, 186
TaqI	TCGA	3 cut(s)	87, 143, 475
TasI	AATT	3 cut(s)	397, 411, 454
TauI	GCSGC	2 cut(s)	60, 206
TseI	GCWGC	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	123
XspI	CTAG	3 cut(s)	362, 407, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.