Rroxscaffold_2G00085890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018646
Physical Location & Seq
Forward (+)
8167151 .. 8178902
11752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085890.1

Sequence Viewer

Length: 576 bp
ATGGTGAAGAATCATAACAGTGCAGAAACCGATATTTTTAATACTCATGGAATATTGATGAGAGACTTACAAGTTCAGTTTCATCAAGAATGCGAGGATGAGTTCAAGGTCAGCAGCGACTCGGGGCTGTCGGAGGAGGAAGTCGAGAAGCACGGGCGGTATACGGATGGAACGAACCGGAGAAGCACGAGGATCGGTCGATCCCGAAGCGCCGATGGATCGGCTCGGCGACACGCTCGTCCGGGTTCGTTGTTCGCGGCGGTTCTCACCTTCGTTCTCGCATGGTACCGATCTATTGGTCGTCCGAGATCGGAGATCGCTCGATCTGTTGGTCGTCTAGGATCGGAGATCGCTCGATCCGTTGACTATTTGGGGTCTAGCTCGATCCGGGTTCGCTCCGATCCGTTGCTCAATTGGGTTCTAGGTCGGCCGCTCGAGGAGAAGGGTTCCGGGTCGACTGCTCGAGGAGAAGAAAAGAGGCGTCTCGAAGTGGTTTCGCCTCAATGTGGCGTTACTTTGATGGTTTTGGTTCGATTTGGGGATTCGAACTTTATTAAATGGGGATTCGTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.4

Weight (kDa)

9.55

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 237
Acc65I GGTACC 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 285
AccBSI CCGCTC 1 cut(s) 433
AccI GTMKAC 2 cut(s) 161, 455
AccII CGCG 1 cut(s) 257
AciI CCGC 4 cut(s) 157, 257, 260, 431
AclWI GGATC 7 cut(s) 195, 200, 226, 349, 351, 379, 395
AcoI YGGCCR 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 481
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 506
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 1 cut(s) 381
AluI AGCT 1 cut(s) 381
Alw26I GTCTC 2 cut(s) 57, 488
AlwI GGATC 7 cut(s) 195, 200, 226, 349, 351, 379, 395
Ama87I CYCGRG 3 cut(s) 121, 434, 462
AoxI GGCC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 114
Asp718I GGTACC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 212
AsuC2I CCSGG 3 cut(s) 243, 389, 451
AsuHPI GGTGA 2 cut(s) 16, 259
AsuII TTCGAA 1 cut(s) 545
AvaI CYCGRG 3 cut(s) 121, 434, 462
BanI GGYRCC 1 cut(s) 285
BauI CACGAG 1 cut(s) 187
BbvI GCAGC 1 cut(s) 126
BccI CCATC 3 cut(s) 161, 209, 514
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BcnI CCSGG 3 cut(s) 243, 389, 451
BcoDI GTCTC 2 cut(s) 57, 488
BfaI CTAG 3 cut(s) 338, 378, 422
BfoI RGCGCY 1 cut(s) 213
BisI GCNGC 3 cut(s) 115, 258, 431
BlsI GCNGC 3 cut(s) 116, 259, 432
Bme1390I CCNGG 3 cut(s) 243, 389, 451
BmeT110I CYCGRG 3 cut(s) 121, 434, 462
BmiI GGNNCC 2 cut(s) 287, 448
BmrFI CCNGG 3 cut(s) 243, 389, 451
Bpu14I TTCGAA 1 cut(s) 545
BpuMI CCSGG 3 cut(s) 243, 389, 451
BsaHI GRCGYC 1 cut(s) 481
BsaWI WCCGGW 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 506
BseGI GGATG 2 cut(s) 103, 172
BseLI CCNNNNNNNGG 1 cut(s) 506
BseRI GAGGAG 3 cut(s) 149, 452, 480
BseX3I CGGCCG 1 cut(s) 428
BseXI GCAGC 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 2 cut(s) 199, 431
BshFI GGCC 1 cut(s) 430
BshNI GGYRCC 1 cut(s) 285
BsiEI CGRYCG 2 cut(s) 199, 431
BsiHKCI CYCGRG 3 cut(s) 121, 434, 462
BsiSI CCGG 4 cut(s) 178, 242, 388, 450
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 2 cut(s) 57, 488
BsmBI CGTCTC 1 cut(s) 488
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 1 cut(s) 430
BsoBI CYCGRG 3 cut(s) 121, 434, 462
Bsp119I TTCGAA 1 cut(s) 545
BspACI CCGC 4 cut(s) 157, 257, 260, 431
BspANI GGCC 1 cut(s) 430
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 2 cut(s) 287, 448
BspPI GGATC 7 cut(s) 195, 200, 226, 349, 351, 379, 395
BspT104I TTCGAA 1 cut(s) 545
BspT107I GGYRCC 1 cut(s) 285
BsrBI CCGCTC 1 cut(s) 433
BssNAI GTATAC 1 cut(s) 162
BssNI GRCGYC 1 cut(s) 481
BssSI CACGAG 1 cut(s) 187
Bst1107I GTATAC 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 481
BstBI TTCGAA 1 cut(s) 545
BstF5I GGATG 2 cut(s) 103, 172
BstFNI CGCG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstMAI GTCTC 2 cut(s) 57, 488
BstMCI CGRYCG 2 cut(s) 199, 431
BstSCI CCNGG 3 cut(s) 241, 387, 449
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 126
BstZ17I GTATAC 1 cut(s) 162
BstZI CGGCCG 1 cut(s) 428
BsuRI GGCC 1 cut(s) 430
BtsCI GGATG 2 cut(s) 103, 172
BtsIMutI CAGTG 1 cut(s) 25
CfoI GCGC 1 cut(s) 212
CseI GACGC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 286
CviAII CATG 2 cut(s) 47, 282
CviJI RGCY 4 cut(s) 127, 224, 381, 430
CviKI_1 RGCY 4 cut(s) 127, 224, 381, 430
CviQI GTAC 1 cut(s) 286
DrdI GACNNNNNNGTC 1 cut(s) 237
DseDI GACNNNNNNGTC 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 428
EagI CGGCCG 1 cut(s) 428
EclXI CGGCCG 1 cut(s) 428
Eco52I CGGCCG 1 cut(s) 428
Eco88I CYCGRG 3 cut(s) 121, 434, 462
Esp3I CGTCTC 1 cut(s) 488
FaeI CATG 2 cut(s) 50, 285
FaiI YATR 4 cut(s) 15, 48, 162, 283
FatI CATG 2 cut(s) 46, 281
FblI GTMKAC 2 cut(s) 161, 455
Fnu4HI GCNGC 3 cut(s) 115, 258, 431
FokI GGATG 2 cut(s) 110, 179
Fsp4HI GCNGC 3 cut(s) 115, 258, 431
FspBI CTAG 3 cut(s) 338, 378, 422
GlaI GCGC 1 cut(s) 211
GluI GCNGC 3 cut(s) 115, 258, 431
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 1 cut(s) 430
HapII CCGG 4 cut(s) 178, 242, 388, 450
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 481
Hin1II CATG 2 cut(s) 50, 285
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HincII GTYRAC 2 cut(s) 364, 456
HindII GTYRAC 2 cut(s) 364, 456
HinfI GANTC 4 cut(s) 10, 119, 542, 564
HpaII CCGG 4 cut(s) 178, 242, 388, 450
HphI GGTGA 2 cut(s) 16, 259
Hpy166II GTNNAC 3 cut(s) 162, 364, 456
Hpy188I TCNGA 5 cut(s) 133, 306, 313, 346, 400
Hpy188III TCNNGA 4 cut(s) 86, 145, 204, 485
Hpy8I GTNNAC 3 cut(s) 162, 364, 456
HpyAV CCTTC 2 cut(s) 280, 436
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 481
Hsp92II CATG 2 cut(s) 50, 285
HspAI GCGC 1 cut(s) 210
KpnI GGTACC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 401
LpnPI CCDG 4 cut(s) 191, 255, 401, 463
Lsp1109I GCAGC 1 cut(s) 126
MaeI CTAG 3 cut(s) 338, 378, 422
MaeIII GTNAC 1 cut(s) 511
MbiI CCGCTC 1 cut(s) 433
MboII GAAGA 2 cut(s) 19, 482
MfeI CAATTG 1 cut(s) 412
MluCI AATT 2 cut(s) 412, 571
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 8 cut(s) 88, 127, 130, 183, 430, 458, 471, 510
MseI TTAA 3 cut(s) 39, 555, 570
MslI CAYNNNNRTG 1 cut(s) 18
MspI CCGG 4 cut(s) 178, 242, 388, 450
MspR9I CCNGG 3 cut(s) 243, 389, 451
MunI CAATTG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 95
MvnI CGCG 1 cut(s) 257
NciI CCSGG 3 cut(s) 243, 389, 451
NlaIII CATG 2 cut(s) 50, 285
NlaIV GGNNCC 2 cut(s) 287, 448
NmeAIII GCCGAG 1 cut(s) 205
NspV TTCGAA 1 cut(s) 545
PaeR7I CTCGAG 2 cut(s) 434, 462
PcsI WCGNNNNNNNCGW 2 cut(s) 170, 357
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 3 cut(s) 10, 542, 564
PkrI GCNGC 3 cut(s) 116, 259, 432
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 287, 448
PspXI VCTCGAGB 2 cut(s) 434, 462
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 18
SalI GTCGAC 1 cut(s) 454
SaqAI TTAA 3 cut(s) 39, 555, 570
SatI GCNGC 3 cut(s) 115, 258, 431
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 3 cut(s) 243, 389, 451
SetI ASST 4 cut(s) 111, 272, 383, 427
Sfr274I CTCGAG 2 cut(s) 434, 462
SfuI TTCGAA 1 cut(s) 545
SlaI CTCGAG 2 cut(s) 434, 462
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 434, 462
SmoI CTYRAG 2 cut(s) 434, 462
Sse9I AATT 2 cut(s) 412, 571
SsiI CCGC 4 cut(s) 157, 257, 260, 431
SspI AATATT 1 cut(s) 54
SspMI CTAG 3 cut(s) 338, 378, 422
StyD4I CCNGG 3 cut(s) 241, 387, 449
TaaI ACNGT 1 cut(s) 20
TaqII GACCGA 1 cut(s) 185
TasI AATT 2 cut(s) 412, 571
TauI GCSGC 2 cut(s) 260, 433
TfiI GAWTC 3 cut(s) 10, 542, 564
Tru1I TTAA 3 cut(s) 39, 555, 570
Tru9I TTAA 3 cut(s) 39, 555, 570
TscAI CASTG 1 cut(s) 25
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 71
TspGWI ACGGA 3 cut(s) 179, 349, 393
TspRI CASTG 1 cut(s) 25
XhoI CTCGAG 2 cut(s) 434, 462
XmiI GTMKAC 2 cut(s) 161, 455
XspI CTAG 3 cut(s) 338, 378, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.