Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018646

Physical Location & Seq

Genomic Coordinates Forward (+)

1716771 .. 1719953

Gene Structure 3183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG009900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGACAGACTTACAAGTTCAGTTTCATCAGGAATGCGAGGACGAGTTCAAGGTCAGCAGCGACTCGGGGCTGTCGGAGGAGGAAGTCGAGAAGCGTCGGGCGGTGTACGGATGGAACGAACTGGAGAAGCACCAGGATCAGTTGATCCTGAAGCTGCTGATGGATCAGCTCAGCGACACGCTCGTCCGGGTTCTGTTGTTCGCGGCGAATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

71

Amino Acids

8.33

Weight (kDa)

4.48

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	10 - 69	1.8e-16	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018646)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001675 RLG00000013678 RLG00000015518
rosa_multiflora	Rmu_sc0000951.1_g000005 Rmu_sc0001565.1_g000049
rosa_roxburghii	Rroxscaffold_2G00085890 Rroxscaffold_4G00289110
rosa_samantha	Rh4CG009900 Rh5AG030000 Rh7CG429800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccII	CGCG	1 cut(s)	203
AciI	CCGC	2 cut(s)	101, 203
AclWI	GGATC	3 cut(s)	139, 144, 171
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	2 cut(s)	154, 169
AluI	AGCT	2 cut(s)	154, 169
AlwI	GGATC	3 cut(s)	139, 144, 171
Ama87I	CYCGRG	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	57, 154
AsuC2I	CCSGG	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	69, 141
BccI	CCATC	2 cut(s)	105, 154
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	188
BisI	GCNGC	3 cut(s)	58, 155, 204
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	3 cut(s)	59, 156, 205
Bme1390I	CCNGG	2 cut(s)	134, 188
BmeT110I	CYCGRG	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	134, 188
BpmI	CTGGAG	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	69, 141
Bsh1236I	CGCG	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	64
Bsp143I	GATC	3 cut(s)	136, 144, 163
Bsp1720I	GCTNAGC	1 cut(s)	170
BspACI	CCGC	2 cut(s)	101, 203
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	203
BspPI	GGATC	3 cut(s)	139, 144, 171
BsrI	ACTGG	1 cut(s)	126
BssMI	GATC	3 cut(s)	136, 144, 163
Bst2UI	CCWGG	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	116
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	3 cut(s)	139, 147, 166
BstMBI	GATC	3 cut(s)	136, 144, 163
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	132, 186
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	69, 141
BtsCI	GGATG	1 cut(s)	116
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	106
CviJI	RGCY	3 cut(s)	70, 154, 169
CviKI_1	RGCY	3 cut(s)	70, 154, 169
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	3 cut(s)	138, 146, 165
DpnII	GATC	3 cut(s)	136, 144, 163
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	132
FaiI	YATR	1 cut(s)	212
Fnu4HI	GCNGC	3 cut(s)	58, 155, 204
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	3 cut(s)	58, 155, 204
GluI	GCNGC	3 cut(s)	58, 155, 204
GsuI	CTGGAG	1 cut(s)	143
HapII	CCGG	1 cut(s)	187
HgaI	GACGC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	29, 88, 148
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	170
Kzo9I	GATC	3 cut(s)	136, 144, 163
LpnPI	CCDG	6 cut(s)	14, 107, 119, 146, 161, 200
Lsp1109I	GCAGC	2 cut(s)	69, 141
MalI	GATC	3 cut(s)	138, 146, 165
MboI	GATC	3 cut(s)	136, 144, 163
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	31, 70, 73
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	2 cut(s)	134, 188
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	203
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	3 cut(s)	136, 144, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	59, 156, 205
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	3 cut(s)	58, 155, 204
Sau3AI	GATC	3 cut(s)	136, 144, 163
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	134, 188
SetI	ASST	3 cut(s)	54, 156, 171
SsiI	CCGC	2 cut(s)	101, 203
StyD4I	CCNGG	2 cut(s)	132, 186
TaqI	TCGA	1 cut(s)	87
TauI	GCSGC	1 cut(s)	206
TseI	GCWGC	2 cut(s)	57, 154
TspDTI	ATGAA	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.