Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018646

Physical Location & Seq

Genomic Coordinates Forward (+)

35710540 .. 35712943

Gene Structure 2404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013678

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCAAGAAAAGAAGAAAAGATGTGGAGAAAAGACTTACAGGTTCAGTTTCTTCAGGAATGCGAGGACGAGTTCAAGGTCAGCCGCGACTCGGGGCTGTCGGAGGAGGAAGTCGAGAAGCGCCGGGCGGTGTACGGATGGAACGAACTGGAGAAGCACGAGGATCAGTCGATCCTGAAGCTGCTGATGGATCAGCTCAGCGACACGCTCGTCCGGGTTCTGTTGTTCGCGGCAGTTCTCTCCTTCGTTCTCGCATGGTACCGATCTGTTGGTCGTCTGGGATCGGAGATTGCTCTGATCTGGGTTGGTCGTCTGAGATCGGAGATCGCTCTGATCTGTTGGTCGTCTGGGATCGGAGATCACTCTGATCTGTTGACTATTTGGGGTCTAGCTCTGATCTGGGTTCGCTCCGATCTGTTGCTCAATTGGGTTCTAGGTCGACTGCTCGAGGAGAAGGGTTCTTGGTCGACTGCTCGAGGAGAAGAAAAGAGGCGTCTGTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

169

Amino Acids

19.64

Weight (kDa)

5.56

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	18 - 81	1.8e-18	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018646)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001675 RLG00000013678 RLG00000015518
rosa_multiflora	Rmu_sc0000951.1_g000005 Rmu_sc0001565.1_g000049
rosa_roxburghii	Rroxscaffold_2G00085890 Rroxscaffold_4G00289110
rosa_samantha	Rh4CG009900 Rh5AG030000 Rh7CG429800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	258
AccI	GTMKAC	2 cut(s)	439, 467
AccII	CGCG	2 cut(s)	87, 230
AciI	CCGC	3 cut(s)	85, 128, 230
AclWI	GGATC	5 cut(s)	166, 171, 198, 289, 359
AcuI	CTGAAG	2 cut(s)	38, 197
AcyI	GRCGYC	1 cut(s)	493
AfaI	GTAC	2 cut(s)	134, 260
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	3 cut(s)	181, 196, 392
AluI	AGCT	3 cut(s)	181, 196, 392
AlwI	GGATC	5 cut(s)	166, 171, 198, 289, 359
Ama87I	CYCGRG	3 cut(s)	91, 446, 474
ApeKI	GCWGC	1 cut(s)	181
Asp718I	GGTACC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	123
AsuC2I	CCSGG	2 cut(s)	125, 215
AvaI	CYCGRG	3 cut(s)	91, 446, 474
BanI	GGYRCC	1 cut(s)	258
BauI	CACGAG	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	132, 181
BcnI	CCSGG	2 cut(s)	125, 215
BfaI	CTAG	2 cut(s)	389, 434
BfoI	RGCGCY	1 cut(s)	124
BisI	GCNGC	3 cut(s)	85, 182, 231
BlpI	GCTNAGC	1 cut(s)	197
BlsI	GCNGC	3 cut(s)	86, 183, 232
Bme1390I	CCNGG	2 cut(s)	125, 215
BmeT110I	CYCGRG	3 cut(s)	91, 446, 474
BmiI	GGNNCC	1 cut(s)	260
BmrFI	CCNGG	2 cut(s)	125, 215
BpmI	CTGGAG	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	125, 215
BsaHI	GRCGYC	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	211, 305
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	3 cut(s)	119, 464, 492
BseXI	GCAGC	1 cut(s)	168
Bsh1236I	CGCG	2 cut(s)	87, 230
BshNI	GGYRCC	1 cut(s)	258
BsiHKCI	CYCGRG	3 cut(s)	91, 446, 474
BsiSI	CCGG	2 cut(s)	124, 214
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	65
BsoBI	CYCGRG	3 cut(s)	91, 446, 474
Bsp1720I	GCTNAGC	1 cut(s)	197
BspACI	CCGC	3 cut(s)	85, 128, 230
BspCNI	CTCAG	2 cut(s)	210, 306
BspFNI	CGCG	2 cut(s)	87, 230
BspLI	GGNNCC	1 cut(s)	260
BspPI	GGATC	5 cut(s)	166, 171, 198, 289, 359
BspT107I	GGYRCC	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	153
BssNI	GRCGYC	1 cut(s)	493
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	493
BstDEI	CTNAG	2 cut(s)	197, 314
BstF5I	GGATG	1 cut(s)	143
BstFNI	CGCG	2 cut(s)	87, 230
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	123, 213
BstUI	CGCG	2 cut(s)	87, 230
BstV1I	GCAGC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	123
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	133, 259
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	5 cut(s)	84, 97, 181, 196, 392
CviKI_1	RGCY	5 cut(s)	84, 97, 181, 196, 392
CviQI	GTAC	2 cut(s)	133, 259
DdeI	CTNAG	2 cut(s)	197, 314
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eco57I	CTGAAG	2 cut(s)	38, 197
Eco88I	CYCGRG	3 cut(s)	91, 446, 474
FaeI	CATG	1 cut(s)	258
FaiI	YATR	1 cut(s)	256
FatI	CATG	1 cut(s)	254
FblI	GTMKAC	2 cut(s)	439, 467
Fnu4HI	GCNGC	3 cut(s)	85, 182, 231
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	85, 182, 231
FspBI	CTAG	2 cut(s)	389, 434
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	3 cut(s)	85, 182, 231
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	124
HapII	CCGG	2 cut(s)	124, 214
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	493
Hin1II	CATG	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	3 cut(s)	375, 440, 468
HindII	GTYRAC	3 cut(s)	375, 440, 468
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	124, 214
Hpy166II	GTNNAC	4 cut(s)	133, 375, 440, 468
Hpy188III	TCNNGA	3 cut(s)	56, 115, 175
Hpy8I	GTNNAC	4 cut(s)	133, 375, 440, 468
HpyAV	CCTTC	2 cut(s)	253, 448
HpyF3I	CTNAG	2 cut(s)	197, 314
Hsp92I	GRCGYC	1 cut(s)	493
Hsp92II	CATG	1 cut(s)	258
HspAI	GCGC	1 cut(s)	121
KpnI	GGTACC	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	1 cut(s)	168
MaeI	CTAG	2 cut(s)	389, 434
MboII	GAAGA	3 cut(s)	26, 44, 494
MfeI	CAATTG	1 cut(s)	424
MluCI	AATT	1 cut(s)	424
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	7 cut(s)	58, 97, 100, 154, 442, 470, 483
MseI	TTAA	1 cut(s)	505
MspI	CCGG	2 cut(s)	124, 214
MspR9I	CCNGG	2 cut(s)	125, 215
MunI	CAATTG	1 cut(s)	424
Mva1269I	GAATGC	1 cut(s)	65
MvnI	CGCG	2 cut(s)	87, 230
NciI	CCSGG	2 cut(s)	125, 215
NlaIII	CATG	1 cut(s)	258
NlaIV	GGNNCC	1 cut(s)	260
PaeR7I	CTCGAG	2 cut(s)	446, 474
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	86, 183, 232
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	260
PspXI	VCTCGAGB	2 cut(s)	446, 474
RsaI	GTAC	2 cut(s)	134, 260
RsaNI	GTAC	2 cut(s)	133, 259
SalI	GTCGAC	2 cut(s)	438, 466
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	3 cut(s)	85, 182, 231
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	125, 215
SetI	ASST	6 cut(s)	45, 81, 183, 198, 394, 439
Sfr274I	CTCGAG	2 cut(s)	446, 474
SlaI	CTCGAG	2 cut(s)	446, 474
SmlI	CTYRAG	2 cut(s)	446, 474
SmoI	CTYRAG	2 cut(s)	446, 474
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	3 cut(s)	85, 128, 230
SspMI	CTAG	2 cut(s)	389, 434
StyD4I	CCNGG	2 cut(s)	123, 213
TaqI	TCGA	6 cut(s)	114, 170, 439, 447, 467, 475
TasI	AATT	1 cut(s)	424
TauI	GCSGC	2 cut(s)	87, 233
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TseI	GCWGC	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	150
XhoI	CTCGAG	2 cut(s)	446, 474
XmiI	GTMKAC	2 cut(s)	439, 467
XspI	CTAG	2 cut(s)	389, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.