Rmu_sc0001565.1_g000049

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001565.1
Physical Location & Seq
Reverse (-)
223437 .. 223718
282 bp
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UTR
Exon/CDS
Intron
Rmu_sc0001565.1_g000049.1.cds

Sequence Viewer

Length: 282 bp
atgacagacttacaagttcagtttcatcaggaatgcgaggacgagttcaaggtcagcaacgactcggggctgtcggaggaggaagtcgagaagcatcgggcggtgtacggatggaacgaactggagaagcaccaggatcggtcgagatcggagatcggagatcgggtgtacggatggaacgaactggagaagcaccgggttctgttgttcgcggcggttctctccttcgctatctattggtcgtctgagatcggagatcgctctgatctgttggtcgcctag

Protein Analysis

93

Amino Acids

10.9

Weight (kDa)

4.68

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 212
AciI CCGC 3 cut(s) 101, 212, 215
AclWI GGATC 1 cut(s) 144
AfaI GTAC 2 cut(s) 107, 170
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 1 cut(s) 132
AlwI GGATC 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 64
BccI CCATC 2 cut(s) 105, 168
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciT130I CCWGG 1 cut(s) 134
BcnI CCSGG 1 cut(s) 197
BfaI CTAG 1 cut(s) 280
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 134, 197
BmeT110I CYCGRG 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 134, 197
BmsI GCATC 1 cut(s) 103
BpmI CTGGAG 2 cut(s) 143, 206
BpuMI CCSGG 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bse1I ACTGG 2 cut(s) 126, 189
BseBI CCWGG 1 cut(s) 134
BseGI GGATG 2 cut(s) 116, 179
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 2 cut(s) 126, 189
BseRI GAGGAG 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 196
BsmI GAATGC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 64
Bsp143I GATC 7 cut(s) 136, 146, 153, 160, 249, 256, 265
BspACI CCGC 3 cut(s) 101, 212, 215
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 1 cut(s) 212
BspPI GGATC 1 cut(s) 144
BsrI ACTGG 2 cut(s) 126, 189
BssMI GATC 7 cut(s) 136, 146, 153, 160, 249, 256, 265
Bst2UI CCWGG 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 116, 179
BstFNI CGCG 1 cut(s) 212
BstKTI GATC 7 cut(s) 139, 149, 156, 163, 252, 259, 268
BstMBI GATC 7 cut(s) 136, 146, 153, 160, 249, 256, 265
BstMCI CGRYCG 1 cut(s) 143
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 2 cut(s) 132, 195
BstUI CGCG 1 cut(s) 212
BtsCI GGATG 2 cut(s) 116, 179
Csp6I GTAC 2 cut(s) 106, 169
CviJI RGCY 1 cut(s) 70
CviKI_1 RGCY 1 cut(s) 70
CviQI GTAC 2 cut(s) 106, 169
DdeI CTNAG 1 cut(s) 246
DpnI GATC 7 cut(s) 138, 148, 155, 162, 251, 258, 267
DpnII GATC 7 cut(s) 136, 146, 153, 160, 249, 256, 265
Eco88I CYCGRG 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 2 cut(s) 123, 186
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 280
GluI GCNGC 1 cut(s) 213
GsuI CTGGAG 2 cut(s) 143, 206
HapII CCGG 1 cut(s) 196
HinfI GANTC 1 cut(s) 62
HpaII CCGG 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 106, 169
Hpy188I TCNGA 6 cut(s) 76, 151, 158, 247, 254, 265
Hpy188III TCNNGA 3 cut(s) 29, 88, 144
Hpy8I GTNNAC 2 cut(s) 106, 169
HpyAV CCTTC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 246
Kzo9I GATC 7 cut(s) 136, 146, 153, 160, 249, 256, 265
LpnPI CCDG 6 cut(s) 14, 107, 119, 146, 170, 209
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 280
MalI GATC 7 cut(s) 138, 148, 155, 162, 251, 258, 267
MboI GATC 7 cut(s) 136, 146, 153, 160, 249, 256, 265
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 3 cut(s) 31, 70, 73
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 2 cut(s) 134, 197
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 212
NciI CCSGG 1 cut(s) 197
NdeII GATC 7 cut(s) 136, 146, 153, 160, 249, 256, 265
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 177
PctI GAATGC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
RsaI GTAC 2 cut(s) 107, 170
RsaNI GTAC 2 cut(s) 106, 169
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 7 cut(s) 136, 146, 153, 160, 249, 256, 265
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 134, 197
SetI ASST 1 cut(s) 54
SfaNI GCATC 1 cut(s) 103
SsiI CCGC 3 cut(s) 101, 212, 215
SspMI CTAG 1 cut(s) 280
StyD4I CCNGG 2 cut(s) 132, 195
TaqI TCGA 2 cut(s) 87, 143
TaqII GACCGA 1 cut(s) 129
TauI GCSGC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 14
TspGWI ACGGA 2 cut(s) 123, 186
XspI CTAG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.