Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0018646

Physical Location & Seq

Genomic Coordinates Reverse (-)

2094820 .. 2102673

Gene Structure 7854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG030000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACCCTGTTCTTGAGAAATATATCGGATTTGGACCTGGACGATCCCCGACGGTGGGAGCCGCCAGAAGACGAGACGCTGCGGTTTTTATGGGACACGGGTCGTGTCTCGGTTTCATTGTTTGAATTGCTTTCCTTACATGAAAAACGATGCAACAACGCACAAGAACCAAACCCTCGTGACTTGCATCCAGTTACTTTTCCTGATAACGCAGAAAGAAATGTTGTTTTCCCAGCTCCTGAAAGACCCATGATTGCTGAAACTCGACCAGGAAAAAAAATTTCGGAATGCGAGGACGAGTTCAAGGTCAGCAGCGACTCGGGGCTGTCGGAGGAGGAAGTCGAGAAGCGTCGGGCAGTGTACGGATGGAACGAACTGGAGAAGCACCAGGATCAGTCGATCCTGAAGCTGCTGATGGATCAGCTCAGCGACACGCTCGTCCGGGTTCTGTTGTTCGCGGCGGTTCTCTCCTTCGCTATCTATTGGTCGTCTGAGATCGGAGATCGCTCTGATCTGTTGGTCGCCTCGGATCGAAGATCGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

181

Amino Acids

20.94

Weight (kDa)

4.74

Isoelectric Point (pI)

63.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	93 - 157	1.6e-18	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018646)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001675 RLG00000013678 RLG00000015518
rosa_multiflora	Rmu_sc0000951.1_g000005 Rmu_sc0001565.1_g000049
rosa_roxburghii	Rroxscaffold_2G00085890 Rroxscaffold_4G00289110
rosa_samantha	Rh4CG009900 Rh5AG030000 Rh7CG429800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AccII	CGCG	1 cut(s)	458
AciI	CCGC	4 cut(s)	62, 82, 458, 461
AclWI	GGATC	5 cut(s)	38, 394, 399, 426, 537
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	54, 55
AgsI	TTSAA	2 cut(s)	125, 304
AjnI	CCWGG	3 cut(s)	36, 268, 387
AluBI	AGCT	3 cut(s)	236, 409, 424
AluI	AGCT	3 cut(s)	236, 409, 424
Alw26I	GTCTC	2 cut(s)	68, 112
AlwI	GGATC	5 cut(s)	38, 394, 399, 426, 537
AlwNI	CAGNNNCTG	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	79, 312, 409
ApoI	RAATTY	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	66, 324, 396
BccI	CCATC	2 cut(s)	360, 409
BciT130I	CCWGG	3 cut(s)	38, 270, 389
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	68, 112
BisI	GCNGC	5 cut(s)	62, 80, 313, 410, 459
BlpI	GCTNAGC	1 cut(s)	425
BlsI	GCNGC	5 cut(s)	63, 81, 314, 411, 460
Bme1390I	CCNGG	4 cut(s)	38, 270, 389, 443
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	4 cut(s)	38, 270, 389, 443
BmsI	GCATC	2 cut(s)	140, 196
BoxI	GACNNNNGTC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	398
Bpu1102I	GCTNAGC	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 55
Bse1I	ACTGG	2 cut(s)	191, 381
BseBI	CCWGG	3 cut(s)	38, 270, 389
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	187, 371
BseLI	CCNNNNNNNGG	2 cut(s)	54, 55
BseMII	CTCAG	2 cut(s)	439, 483
BseNI	ACTGG	2 cut(s)	191, 381
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	3 cut(s)	66, 324, 396
BseYI	CCCAGC	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	458
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	54, 55
BsmAI	GTCTC	2 cut(s)	68, 112
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	319
Bsp143I	GATC	9 cut(s)	43, 391, 399, 418, 495, 502, 511, 529, 536
Bsp1720I	GCTNAGC	1 cut(s)	425
BspACI	CCGC	4 cut(s)	62, 82, 458, 461
BspCNI	CTCAG	2 cut(s)	438, 484
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	5 cut(s)	38, 394, 399, 426, 537
BsrI	ACTGG	2 cut(s)	191, 381
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	9 cut(s)	43, 391, 399, 418, 495, 502, 511, 529, 536
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	3 cut(s)	38, 270, 389
Bst4CI	ACNGT	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	425, 492
BstF5I	GGATG	2 cut(s)	187, 371
BstFNI	CGCG	1 cut(s)	458
BstKTI	GATC	9 cut(s)	46, 394, 402, 421, 498, 505, 514, 532, 539
BstMAI	GTCTC	2 cut(s)	68, 112
BstMBI	GATC	9 cut(s)	43, 391, 399, 418, 495, 502, 511, 529, 536
BstNI	CCWGG	3 cut(s)	38, 270, 389
BstPAI	GACNNNNGTC	1 cut(s)	99
BstSCI	CCNGG	4 cut(s)	36, 268, 387, 441
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	3 cut(s)	66, 324, 396
BstV2I	GAAGAC	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	187, 371
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	2 cut(s)	85, 338
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	140, 250
CviJI	RGCY	5 cut(s)	61, 236, 325, 409, 424
CviKI_1	RGCY	5 cut(s)	61, 236, 325, 409, 424
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	425, 492
DpnI	GATC	9 cut(s)	45, 393, 401, 420, 497, 504, 513, 531, 538
DpnII	GATC	9 cut(s)	43, 391, 399, 418, 495, 502, 511, 529, 536
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	319
EcoRII	CCWGG	3 cut(s)	36, 268, 387
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	143, 253
FaiI	YATR	4 cut(s)	23, 91, 141, 251
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	2 cut(s)	139, 249
Fnu4HI	GCNGC	5 cut(s)	62, 80, 313, 410, 459
FokI	GGATG	2 cut(s)	174, 378
Fsp4HI	GCNGC	5 cut(s)	62, 80, 313, 410, 459
GluI	GCNGC	5 cut(s)	62, 80, 313, 410, 459
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	398
HapII	CCGG	1 cut(s)	442
HgaI	GACGC	2 cut(s)	85, 338
Hin1II	CATG	2 cut(s)	143, 253
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	442
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	8 cut(s)	28, 286, 331, 493, 500, 511, 529, 545
Hpy188III	TCNNGA	6 cut(s)	13, 179, 203, 239, 343, 403
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	2 cut(s)	54, 354
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	153, 187
HpyF3I	CTNAG	2 cut(s)	425, 492
Hsp92II	CATG	2 cut(s)	143, 253
Kzo9I	GATC	9 cut(s)	43, 391, 399, 418, 495, 502, 511, 529, 536
LmnI	GCTCC	2 cut(s)	58, 241
Lsp1109I	GCAGC	3 cut(s)	66, 324, 396
LweI	GCATC	2 cut(s)	140, 196
MaeIII	GTNAC	2 cut(s)	179, 193
MalI	GATC	9 cut(s)	45, 393, 401, 420, 497, 504, 513, 531, 538
MboI	GATC	9 cut(s)	43, 391, 399, 418, 495, 502, 511, 529, 536
MboII	GAAGA	2 cut(s)	80, 546
MluCI	AATT	2 cut(s)	125, 279
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	5 cut(s)	186, 286, 325, 328, 535
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	4 cut(s)	38, 270, 389, 443
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	3 cut(s)	38, 270, 389
MvnI	CGCG	1 cut(s)	458
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	9 cut(s)	43, 391, 399, 418, 495, 502, 511, 529, 536
NlaIII	CATG	2 cut(s)	143, 253
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PctI	GAATGC	1 cut(s)	293
PkrI	GCNGC	5 cut(s)	63, 81, 314, 411, 460
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PshAI	GACNNNNGTC	1 cut(s)	99
Psp6I	CCWGG	3 cut(s)	36, 268, 387
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	3 cut(s)	36, 268, 387
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SatI	GCNGC	5 cut(s)	62, 80, 313, 410, 459
Sau3AI	GATC	9 cut(s)	43, 391, 399, 418, 495, 502, 511, 529, 536
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	4 cut(s)	38, 270, 389, 443
SetI	ASST	5 cut(s)	39, 238, 309, 411, 426
SfaNI	GCATC	2 cut(s)	140, 196
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	125, 279
SsiI	CCGC	4 cut(s)	62, 82, 458, 461
StyD4I	CCNGG	4 cut(s)	36, 268, 387, 441
TaaI	ACNGT	1 cut(s)	54
TaqI	TCGA	4 cut(s)	265, 342, 398, 532
TasI	AATT	2 cut(s)	125, 279
TauI	GCSGC	2 cut(s)	64, 461
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	3 cut(s)	79, 312, 409
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	105, 156
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.