Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018646

Physical Location & Seq

Genomic Coordinates Reverse (-)

67406594 .. 67407649

Gene Structure 1056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015518

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGACAGACTTACAGGTTCAGTTTCTTCAGGAATGCGAGGACGAGTTCAAGGTCAGCCGCGACTCGGGGCTGTCGGAGGAGGAAGTCAAGAAGCGCCAGGCGGTGTACGGATGGAACGAACTGGAGAAGCACGAGGATCAGTCGATCCTGAAGCTGCTGATGGATCAGCTCAGCGACACGCTCGTCCGGGTTCTGTTGTTCGCGGCTGTTCTCTCCTTCGTTCTCGCATGGTACCGATCTGTTGGTCGTCTGGGATCGGAGATTGCTCTGATCTGGGTTGGTCGTCTGAGATCGGAGATCGCTCTGATCTGTTGGTCGTCTGGGATCGGAGATCACTCTGATCTGTTGACTATTTGGGGTCTAGCTCTGATCTGGGTTCGCTCCGATCTGTTGCTCAGTTGGGTTCTAGGTCGACTGCTCGAGGAGAAGGGTTCTAGGTCGACTGCTCGAGGAGAAGAAAAGAGGGGTGATGCTTATACCTCTTCAAGTGTTGACAAGGGCTTCATAGGAATGGATTCCCACATTCATGATCTATTAAGCAATTACATATGTCCGCAGCTTGGCGGGGTGCGTTTTATAGGGATCCATGGCATGCGGGGCATAGGTAAGACAACACTTGCTCGAGCTATCCATGATGAAATTTGTCAGGATTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

220

Amino Acids

24.68

Weight (kDa)

5.29

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	9 - 72	1e-17	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018646)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001675 RLG00000013678 RLG00000015518
rosa_multiflora	Rmu_sc0000951.1_g000005 Rmu_sc0001565.1_g000049
rosa_roxburghii	Rroxscaffold_2G00085890 Rroxscaffold_4G00289110
rosa_samantha	Rh4CG009900 Rh5AG030000 Rh7CG429800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	231
AccI	GTMKAC	2 cut(s)	412, 440
AccII	CGCG	2 cut(s)	60, 203
AciI	CCGC	6 cut(s)	58, 101, 203, 554, 564, 595
AclWI	GGATC	7 cut(s)	139, 144, 171, 262, 332, 577, 590
AcsI	RAATTY	1 cut(s)	639
AcuI	CTGAAG	2 cut(s)	11, 170
AfaI	GTAC	2 cut(s)	107, 233
AfiI	CCNNNNNNNGG	2 cut(s)	64, 560
AgsI	TTSAA	2 cut(s)	49, 486
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	5 cut(s)	154, 169, 365, 559, 626
AluI	AGCT	5 cut(s)	154, 169, 365, 559, 626
AlwI	GGATC	7 cut(s)	139, 144, 171, 262, 332, 577, 590
Ama87I	CYCGRG	4 cut(s)	64, 419, 447, 621
ApeKI	GCWGC	2 cut(s)	154, 556
ApoI	RAATTY	1 cut(s)	639
Asp700I	GAANNNNTTC	1 cut(s)	514
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	479
AvaI	CYCGRG	4 cut(s)	64, 419, 447, 621
BamHI	GGATCC	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	141, 568
BccI	CCATC	2 cut(s)	105, 154
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	188
BfaI	CTAG	3 cut(s)	362, 407, 435
BfoI	RGCGCY	1 cut(s)	97
BisI	GCNGC	4 cut(s)	58, 155, 204, 557
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	4 cut(s)	59, 156, 205, 558
Bme1390I	CCNGG	2 cut(s)	98, 188
BmeT110I	CYCGRG	4 cut(s)	64, 419, 447, 621
BmiI	GGNNCC	2 cut(s)	233, 584
BmrFI	CCNGG	2 cut(s)	98, 188
BmsI	GCATC	1 cut(s)	460
BpmI	CTGGAG	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 560
Bse1I	ACTGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	64, 560
BseMII	CTCAG	3 cut(s)	184, 278, 409
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	3 cut(s)	92, 437, 465
BseXI	GCAGC	2 cut(s)	141, 568
Bsh1236I	CGCG	2 cut(s)	60, 203
BshNI	GGYRCC	1 cut(s)	231
BsiHKCI	CYCGRG	4 cut(s)	64, 419, 447, 621
BsiSI	CCGG	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	64, 560
BsmI	GAATGC	1 cut(s)	38
BsoBI	CYCGRG	4 cut(s)	64, 419, 447, 621
Bsp1720I	GCTNAGC	1 cut(s)	170
Bsp19I	CCATGG	1 cut(s)	586
BspACI	CCGC	6 cut(s)	58, 101, 203, 554, 564, 595
BspCNI	CTCAG	3 cut(s)	183, 279, 408
BspFNI	CGCG	2 cut(s)	60, 203
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	233, 584
BspPI	GGATC	7 cut(s)	139, 144, 171, 262, 332, 577, 590
BspT107I	GGYRCC	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	586
BssSI	CACGAG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	586
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	487
BstC8I	GCNNGC	1 cut(s)	593
BstDEI	CTNAG	3 cut(s)	170, 287, 395
BstDSI	CCRYGG	1 cut(s)	586
BstF5I	GGATG	1 cut(s)	116
BstFNI	CGCG	2 cut(s)	60, 203
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	597
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	2 cut(s)	96, 186
BstUI	CGCG	2 cut(s)	60, 203
BstV1I	GCAGC	2 cut(s)	141, 568
BstX2I	RGATCY	1 cut(s)	582
BstYI	RGATCY	1 cut(s)	582
BtgI	CCRYGG	1 cut(s)	586
BtsCI	GGATG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	593
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	106, 232
CviAII	CATG	5 cut(s)	228, 527, 587, 592, 632
CviJI	RGCY	9 cut(s)	57, 70, 154, 169, 206, 365, 501, 559, 626
CviKI_1	RGCY	9 cut(s)	57, 70, 154, 169, 206, 365, 501, 559, 626
CviQI	GTAC	2 cut(s)	106, 232
DdeI	CTNAG	3 cut(s)	170, 287, 395
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	586
Eco57I	CTGAAG	2 cut(s)	11, 170
Eco88I	CYCGRG	4 cut(s)	64, 419, 447, 621
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	5 cut(s)	231, 530, 590, 595, 635
FatI	CATG	5 cut(s)	227, 526, 586, 591, 631
FauI	CCCGC	2 cut(s)	557, 588
FauNDI	CATATG	1 cut(s)	548
FblI	GTMKAC	2 cut(s)	412, 440
Fnu4HI	GCNGC	4 cut(s)	58, 155, 204, 557
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	4 cut(s)	58, 155, 204, 557
FspBI	CTAG	3 cut(s)	362, 407, 435
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	4 cut(s)	58, 155, 204, 557
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	97
HapII	CCGG	1 cut(s)	187
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	5 cut(s)	231, 530, 590, 595, 635
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	4 cut(s)	348, 413, 441, 493
HindII	GTYRAC	4 cut(s)	348, 413, 441, 493
HinfI	GANTC	2 cut(s)	62, 515
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	5 cut(s)	106, 348, 413, 441, 493
Hpy188III	TCNNGA	5 cut(s)	29, 88, 148, 527, 647
Hpy8I	GTNNAC	5 cut(s)	106, 348, 413, 441, 493
HpyAV	CCTTC	2 cut(s)	226, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	597
HpyF3I	CTNAG	3 cut(s)	170, 287, 395
Hsp92II	CATG	5 cut(s)	231, 530, 590, 595, 635
HspAI	GCGC	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	386
Lsp1109I	GCAGC	2 cut(s)	141, 568
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	3 cut(s)	362, 407, 435
MboII	GAAGA	3 cut(s)	17, 467, 474
MflI	RGATCY	1 cut(s)	582
MluCI	AATT	2 cut(s)	541, 639
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	8 cut(s)	31, 70, 73, 127, 415, 443, 456, 490
MroXI	GAANNNNTTC	1 cut(s)	514
MseI	TTAA	1 cut(s)	536
MslI	CAYNNNNRTG	2 cut(s)	509, 525
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	2 cut(s)	98, 188
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	2 cut(s)	60, 203
MwoI	GCNNNNNNNGC	1 cut(s)	597
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	586
NdeI	CATATG	1 cut(s)	548
NlaIII	CATG	5 cut(s)	231, 530, 590, 595, 635
NlaIV	GGNNCC	2 cut(s)	233, 584
NspI	RCATGY	1 cut(s)	595
PaeI	GCATGC	1 cut(s)	595
PaeR7I	CTCGAG	3 cut(s)	419, 447, 621
PagI	TCATGA	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	4 cut(s)	59, 156, 205, 558
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	233, 584
PspXI	VCTCGAGB	3 cut(s)	419, 447, 621
PsuI	RGATCY	1 cut(s)	582
RsaI	GTAC	2 cut(s)	107, 233
RsaNI	GTAC	2 cut(s)	106, 232
RseI	CAYNNNNRTG	2 cut(s)	509, 525
SalI	GTCGAC	2 cut(s)	411, 439
SaqAI	TTAA	1 cut(s)	536
SatI	GCNGC	4 cut(s)	58, 155, 204, 557
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	98, 188
SfaNI	GCATC	1 cut(s)	460
Sfr274I	CTCGAG	3 cut(s)	419, 447, 621
SlaI	CTCGAG	3 cut(s)	419, 447, 621
SmiMI	CAYNNNNRTG	2 cut(s)	509, 525
SmlI	CTYRAG	3 cut(s)	419, 447, 621
SmoI	CTYRAG	3 cut(s)	419, 447, 621
SphI	GCATGC	1 cut(s)	595
Sse9I	AATT	2 cut(s)	541, 639
SsiI	CCGC	6 cut(s)	58, 101, 203, 554, 564, 595
SspMI	CTAG	3 cut(s)	362, 407, 435
StyD4I	CCNGG	2 cut(s)	96, 186
StyI	CCWWGG	1 cut(s)	586
TaqI	TCGA	6 cut(s)	143, 412, 420, 440, 448, 622
TasI	AATT	2 cut(s)	541, 639
TauI	GCSGC	2 cut(s)	60, 206
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	1 cut(s)	536
Tru9I	TTAA	1 cut(s)	536
TseI	GCWGC	2 cut(s)	154, 556
TspDTI	ATGAA	3 cut(s)	493, 515, 651
TspGWI	ACGGA	1 cut(s)	123
XapI	RAATTY	1 cut(s)	639
XceI	RCATGY	1 cut(s)	595
XhoI	CTCGAG	3 cut(s)	419, 447, 621
XmiI	GTMKAC	2 cut(s)	412, 440
XmnI	GAANNNNTTC	1 cut(s)	514
XspI	CTAG	3 cut(s)	362, 407, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.