Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018646

Physical Location & Seq

Genomic Coordinates Reverse (-)

9733999 .. 9745130

Gene Structure 11132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTTTTCTTTATTTTTATTTTACTATTTTAACCAAGCATCATTCAAGAAAATATCAATTTATCATCGGAAGAGTGAAGTAAGAAAGGATATGAAATCAGATCTAGAACATGGAATATTGATGAGAGACTTACGAGTTCGCTTTCTTCGGGAATGCGAGGATGAGTTCAAGGTCAGCCACGATTCGGGGCGTCGAGAGGAGGAAGTCGAGAAGCGCCGGGCGGTGTACGGATGGAACGAATCGGAGAAGCATGAGGATCGGTTGATCCCGAAGCCGCCGATGGATCAGCTCGCCGACACGCTCCTCCGGTTCCGTTGTTCGCGGCGGTTCTCTCCTTCGTTCTCGCATGGTACCGATCCGTTGGTCGTCCGGGATCGGAGATCGCTCCGATCCGGGTTGGTCGTCCGAGATCGGAGATCGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

141

Amino Acids

17.04

Weight (kDa)

9.81

Isoelectric Point (pI)

64.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018646)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001675 RLG00000013678 RLG00000015518
rosa_multiflora	Rmu_sc0000951.1_g000005 Rmu_sc0001565.1_g000049
rosa_roxburghii	Rroxscaffold_2G00085890 Rroxscaffold_4G00289110
rosa_samantha	Rh4CG009900 Rh5AG030000 Rh7CG429800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	350
AccII	CGCG	1 cut(s)	322
AciI	CCGC	4 cut(s)	221, 275, 322, 325
AclWI	GGATC	6 cut(s)	259, 264, 291, 350, 381, 384
AcyI	GRCGYC	1 cut(s)	190
AfaI	GTAC	2 cut(s)	227, 352
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	46, 169
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	6 cut(s)	259, 264, 291, 350, 381, 384
Asp718I	GGTACC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	216
AsuC2I	CCSGG	3 cut(s)	218, 371, 394
BanI	GGYRCC	1 cut(s)	350
BccI	CCATC	2 cut(s)	225, 274
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BcnI	CCSGG	3 cut(s)	218, 371, 394
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	217
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	2 cut(s)	275, 323
BlsI	GCNGC	2 cut(s)	276, 324
Bme1390I	CCNGG	3 cut(s)	218, 371, 394
BmiI	GGNNCC	2 cut(s)	311, 352
BmrFI	CCNGG	3 cut(s)	218, 371, 394
BmsI	GCATC	1 cut(s)	47
BpuMI	CCSGG	3 cut(s)	218, 371, 394
BsaHI	GRCGYC	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	166, 236
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseRI	GAGGAG	2 cut(s)	212, 293
Bsh1236I	CGCG	1 cut(s)	322
BshNI	GGYRCC	1 cut(s)	350
BsiSI	CCGG	4 cut(s)	217, 307, 370, 393
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	158
BspACI	CCGC	4 cut(s)	221, 275, 322, 325
BspFNI	CGCG	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	311, 352
BspPI	GGATC	6 cut(s)	259, 264, 291, 350, 381, 384
BspT107I	GGYRCC	1 cut(s)	350
BssNI	GRCGYC	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	166, 236
BstFNI	CGCG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstMAI	GTCTC	1 cut(s)	120
BstSCI	CCNGG	3 cut(s)	216, 369, 392
BstUI	CGCG	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	166, 236
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	1 cut(s)	216
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	226, 351
CviAII	CATG	3 cut(s)	110, 251, 347
CviJI	RGCY	3 cut(s)	177, 274, 289
CviKI_1	RGCY	3 cut(s)	177, 274, 289
CviQI	GTAC	2 cut(s)	226, 351
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
FaeI	CATG	3 cut(s)	113, 254, 350
FaiI	YATR	4 cut(s)	92, 111, 252, 348
FatI	CATG	3 cut(s)	109, 250, 346
Fnu4HI	GCNGC	2 cut(s)	275, 323
FokI	GGATG	2 cut(s)	173, 243
Fsp4HI	GCNGC	2 cut(s)	275, 323
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	2 cut(s)	275, 323
HaeII	RGCGCY	1 cut(s)	217
HapII	CCGG	4 cut(s)	217, 307, 370, 393
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	3 cut(s)	113, 254, 350
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	182, 239
HpaII	CCGG	4 cut(s)	217, 307, 370, 393
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	7 cut(s)	69, 100, 244, 378, 389, 407, 414
Hpy188III	TCNNGA	6 cut(s)	46, 104, 149, 194, 208, 268
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	3 cut(s)	113, 254, 350
HspAI	GCGC	1 cut(s)	214
KpnI	GGTACC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	306, 390
LpnPI	CCDG	4 cut(s)	230, 320, 383, 406
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	104
MboII	GAAGA	2 cut(s)	82, 137
MflI	RGATCY	1 cut(s)	100
MluCI	AATT	1 cut(s)	57
MnlI	CCTC	5 cut(s)	151, 190, 193, 247, 314
MseI	TTAA	1 cut(s)	30
MspI	CCGG	4 cut(s)	217, 307, 370, 393
MspR9I	CCNGG	3 cut(s)	218, 371, 394
Mva1269I	GAATGC	1 cut(s)	158
MvnI	CGCG	1 cut(s)	322
NciI	CCSGG	3 cut(s)	218, 371, 394
NlaIII	CATG	3 cut(s)	113, 254, 350
NlaIV	GGNNCC	2 cut(s)	311, 352
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	182, 239
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	276, 324
PspN4I	GGNNCC	2 cut(s)	311, 352
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	2 cut(s)	227, 352
RsaNI	GTAC	2 cut(s)	226, 351
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	275, 323
ScrFI	CCNGG	3 cut(s)	218, 371, 394
SetI	ASST	2 cut(s)	174, 291
SfaNI	GCATC	1 cut(s)	47
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	4 cut(s)	221, 275, 322, 325
SspI	AATATT	1 cut(s)	117
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	216, 369, 392
TaqI	TCGA	2 cut(s)	193, 207
TaqII	GACCGA	1 cut(s)	409
TasI	AATT	1 cut(s)	57
TauI	GCSGC	2 cut(s)	277, 325
TfiI	GAWTC	2 cut(s)	182, 239
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	3 cut(s)	243, 302, 348
XbaI	TCTAGA	1 cut(s)	103
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.