Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016426

Physical Location & Seq

Genomic Coordinates Forward (+)

19837532 .. 19838574

Gene Structure 1043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001733

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAAGAGTTTGCAGCTGCAACAGAAAACTTTCAGACGCAAACTGGTTGTGGATGATTTGGTACAATATATACCAGACAATGCTATAGTGGCAGTGAAGATTGAAGAAGATCACAAGTTTGGGAGACCGAGGGAAAATGAAATTTTGAACCAAGATAGAGCAATAGTCGGAAGTGTCCACCATTGCAATCTGGTTGAGAGTGGCAATGAAAATGGTGAAGGAAATGGACTGTCATTAGAAATGCATAAGCAGAAGAAGTATATGGAACTATCAGACCTGAGGTATACGGACTGTCAGTTCGGAACTCCTAGCAATATATTTTCCTCTAATGCATTAGAAATGCATAAGCAGAAGAGGTATATGGAACTAGCAGACCTGAGGTTAGAGGGACAATTGAGGAGTGAGGAAGTTGAGAAGCTAGTGAGTGTAGCCTTGTGTTGTGTGCATGTAGTGCCAACACTGAAGCCATGTATGATCAATGTGGTTGCTATGTTGGAAGGCAGATTACCTGTAGGGGATCCCCGGACTGAGGCACTTGAATTTTTATGGTTTTATGGTGGAAAATTCACCCAAGCATCCAGAAAGATTGCAAGGATTGTTCAGTTTGGGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

206

Amino Acids

23.43

Weight (kDa)

8.24

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342671 RchiOBHm_Chr7g0227281 RchiOBHm_Chr7g0227411
rosa_laevigata	RLG00000001733 RLG00000001735 RLG00000001737 RLG00000001739 RLG00000001742
rosa_multiflora	Rmu_sc0000173.1_g000007 Rmu_sc0003542.1_g000012 Rmu_ssc0000177.1_g000003
rosa_roxburghii	Rroxscaffold_3G00233220
rosa_samantha	Rh7AG391300 Rh7CG410300 Rh7CG468800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	284
AclWI	GGATC	2 cut(s)	512, 525
AcsI	RAATTY	3 cut(s)	141, 539, 563
AcuI	CTGAAG	1 cut(s)	482
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	3 cut(s)	104, 148, 539
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	2 cut(s)	16, 418
AluI	AGCT	2 cut(s)	16, 418
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	2 cut(s)	512, 525
ApeKI	GCWGC	2 cut(s)	13, 16
ApoI	RAATTY	3 cut(s)	141, 539, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
Asp700I	GAANNNNTTC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	227, 559
AxyI	CCTNAGG	2 cut(s)	278, 377
BamHI	GGATCC	1 cut(s)	517
BarI	GAAGNNNNNNTAC	2 cut(s)	489, 521
BbvI	GCAGC	2 cut(s)	3, 25
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	3 cut(s)	309, 368, 419
BfmI	CTRYAG	2 cut(s)	84, 510
BisI	GCNGC	2 cut(s)	14, 17
BlsI	GCNGC	2 cut(s)	15, 18
Bme1390I	CCNGG	1 cut(s)	523
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	523
BmsI	GCATC	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	523
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	128, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	48
Bse21I	CCTNAGG	2 cut(s)	278, 377
Bse3DI	GCAATG	2 cut(s)	181, 211
BseDI	CCNNGG	2 cut(s)	128, 521
BseGI	GGATG	2 cut(s)	58, 575
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMI	GCAATG	2 cut(s)	181, 211
BseMII	CTCAG	3 cut(s)	269, 368, 519
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	3, 25
BsiSI	CCGG	1 cut(s)	523
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	402
Bso31I	GGTCTC	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	109, 474, 517
BspCNI	CTCAG	3 cut(s)	270, 369, 520
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	2 cut(s)	512, 525
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	2 cut(s)	181, 211
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	128, 521
BssMI	GATC	3 cut(s)	109, 474, 517
BssNAI	GTATAC	1 cut(s)	285
Bst1107I	GTATAC	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	231, 293
Bst6I	CTCTTC	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstDEI	CTNAG	3 cut(s)	278, 377, 528
BstF5I	GGATG	2 cut(s)	58, 575
BstKTI	GATC	3 cut(s)	112, 477, 520
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	3 cut(s)	109, 474, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 451
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	521
BstSFI	CTRYAG	2 cut(s)	84, 510
BstV1I	GCAGC	2 cut(s)	3, 25
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BstZ17I	GTATAC	1 cut(s)	285
Bsu36I	CCTNAGG	2 cut(s)	278, 377
BtsCI	GGATG	2 cut(s)	58, 575
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	99, 458
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	2 cut(s)	446, 468
CviJI	RGCY	4 cut(s)	16, 418, 431, 466
CviKI_1	RGCY	4 cut(s)	16, 418, 431, 466
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	3 cut(s)	278, 377, 528
DpnI	GATC	3 cut(s)	111, 476, 519
DpnII	GATC	3 cut(s)	109, 474, 517
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	482
Eco81I	CCTNAGG	2 cut(s)	278, 377
EcoT22I	ATGCAT	3 cut(s)	246, 334, 345
FaeI	CATG	2 cut(s)	449, 471
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	2 cut(s)	445, 467
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	2 cut(s)	14, 17
FokI	GGATG	2 cut(s)	65, 562
Fsp4HI	GCNGC	2 cut(s)	14, 17
FspBI	CTAG	3 cut(s)	309, 368, 419
GluI	GCNGC	2 cut(s)	14, 17
HapII	CCGG	1 cut(s)	523
HgaI	GACGC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	449, 471
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	2 cut(s)	227, 559
Hpy166II	GTNNAC	2 cut(s)	178, 285
Hpy188I	TCNGA	4 cut(s)	35, 170, 274, 302
Hpy188III	TCNNGA	1 cut(s)	579
Hpy8I	GTNNAC	2 cut(s)	178, 285
HpyAV	CCTTC	2 cut(s)	212, 491
HpyCH4III	ACNGT	2 cut(s)	231, 293
HpyCH4V	TGCA	8 cut(s)	13, 19, 186, 244, 332, 343, 445, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 451
HpyF3I	CTNAG	3 cut(s)	278, 377, 528
Hsp92II	CATG	2 cut(s)	449, 471
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	3 cut(s)	109, 474, 517
LpnPI	CCDG	8 cut(s)	29, 87, 176, 290, 389, 522, 536, 592
Lsp1109I	GCAGC	2 cut(s)	3, 25
LweI	GCATC	1 cut(s)	584
MaeI	CTAG	3 cut(s)	309, 368, 419
MalI	GATC	3 cut(s)	111, 476, 519
MboI	GATC	3 cut(s)	109, 474, 517
MboII	GAAGA	6 cut(s)	16, 109, 116, 119, 265, 364
MfeI	CAATTG	1 cut(s)	392
MflI	RGATCY	1 cut(s)	517
MluCI	AATT	4 cut(s)	141, 392, 539, 563
MmeI	TCCRAC	2 cut(s)	148, 474
MnlI	CCTC	9 cut(s)	123, 273, 334, 348, 372, 379, 390, 397, 523
Mph1103I	ATGCAT	3 cut(s)	246, 334, 345
MroXI	GAANNNNTTC	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	1 cut(s)	523
MspR9I	CCNGG	1 cut(s)	523
MunI	CAATTG	1 cut(s)	392
MwoI	GCNNNNNNNGC	2 cut(s)	89, 451
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	3 cut(s)	109, 474, 517
NlaIII	CATG	2 cut(s)	449, 471
NlaIV	GGNNCC	1 cut(s)	519
NsiI	ATGCAT	3 cut(s)	246, 334, 345
NspI	RCATGY	1 cut(s)	449
PdmI	GAANNNNTTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	15, 18
PspN4I	GGNNCC	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SatI	GCNGC	2 cut(s)	14, 17
Sau3AI	GATC	3 cut(s)	109, 474, 517
ScrFI	CCNGG	1 cut(s)	523
SetI	ASST	8 cut(s)	18, 279, 284, 359, 378, 383, 420, 511
SfaNI	GCATC	1 cut(s)	584
SfcI	CTRYAG	2 cut(s)	84, 510
Sse9I	AATT	4 cut(s)	141, 392, 539, 563
SspMI	CTAG	3 cut(s)	309, 368, 419
StyD4I	CCNGG	1 cut(s)	521
TaaI	ACNGT	2 cut(s)	231, 293
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	4 cut(s)	141, 392, 539, 563
TscAI	CASTG	2 cut(s)	99, 465
TseI	GCWGC	2 cut(s)	13, 16
TspDTI	ATGAA	3 cut(s)	17, 153, 222
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	2 cut(s)	99, 465
XapI	RAATTY	3 cut(s)	141, 539, 563
XceI	RCATGY	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	3 cut(s)	309, 368, 419
Zsp2I	ATGCAT	3 cut(s)	246, 334, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.