Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016426

Physical Location & Seq

Genomic Coordinates Reverse (-)

19144979 .. 19147267

Gene Structure 2289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTGGTCCTAGTAATTATATGGTTGAGAAAGAAAAGGCCAACTGGAGTAAATTTAGACAGAAGTGATTCATCTTCATCAGCAGAGCTGGAGATTATCTCTATTCTGGGTTTGCCCAGCAGATTCAATAATGAAGAGTTTGCAGCTGCAACAGAAAACTTCCAGACCCAAACTGGCAGTGGAGGATTTGTGCCAACACTGAAGCCATGTATGATCAATGTGGTTGCGTTGGAAGGCAGATTACCTGTAGGGGATCCCCGGACTGAGGCACTTGAATTTTTATGGTCTTATGGTGGAAAATTCACCCAAGCATCCAGAAAGCTTGCAAGGATTGTTCAGTTAGGGAAGAAGAAACTCGTTTTCTTATGGCAGATGAATTTACATACCTCTGATTGTAGTGAAATTGCAAACACTTGGACAGCTCTGAGAGGACTGGATCTGCAAGTTGGCTTCTTCACCTTCAAGCAAAAAATAGCTGCCACTAATAACTTTGATCCTGTAAACAAAATTGGGGAAGGTGATTTTGGAGCTGTTTACAAGAGAACGTTAGTGGATGGTACTATAATTGCAGTAAAGCAATTATCTGCAAAATCGAAGCAAGGAAATTGTGAATTTGTGACTGAAATAGGCATGTTTTCTGGCTTGCAGCACGCAAATGTCTTGAGATTGTATGGATGTTGTATTGAAGCAAATCAGTTACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

234

Amino Acids

25.82

Weight (kDa)

8.98

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	167 - 232	9.6e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	168 - 232	5e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342671 RchiOBHm_Chr7g0227281 RchiOBHm_Chr7g0227411
rosa_laevigata	RLG00000001733 RLG00000001735 RLG00000001737 RLG00000001739 RLG00000001742
rosa_multiflora	Rmu_sc0000173.1_g000007 Rmu_sc0003542.1_g000012 Rmu_ssc0000177.1_g000003
rosa_roxburghii	Rroxscaffold_3G00233220
rosa_samantha	Rh7AG391300 Rh7CG410300 Rh7CG468800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	545
AclWI	GGATC	4 cut(s)	248, 261, 444, 488
AcsI	RAATTY	5 cut(s)	52, 275, 299, 376, 611
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	559
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	4 cut(s)	127, 275, 463, 686
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	6 cut(s)	88, 146, 322, 422, 476, 530
AluI	AGCT	6 cut(s)	88, 146, 322, 422, 476, 530
AlwI	GGATC	4 cut(s)	248, 261, 444, 488
AlwNI	CAGNNNCTG	1 cut(s)	700
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	4 cut(s)	143, 146, 476, 646
ApoI	RAATTY	5 cut(s)	52, 275, 299, 376, 611
Asp700I	GAANNNNTTC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	295, 448, 530
AvaII	GGWCC	1 cut(s)	7
BamHI	GGATCC	1 cut(s)	253
BarI	GAAGNNNNNNTAC	2 cut(s)	225, 257
BbvI	GCAGC	4 cut(s)	133, 155, 463, 658
BccI	CCATC	1 cut(s)	548
BclI	TGATCA	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	259
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	2 cut(s)	246, 701
BisI	GCNGC	4 cut(s)	144, 147, 477, 647
BlsI	GCNGC	4 cut(s)	145, 148, 478, 648
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	320
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	2 cut(s)	66, 110
BpuEI	CTTGAG	1 cut(s)	682
BpuMI	CCSGG	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	3 cut(s)	49, 178, 438
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	3 cut(s)	311, 559, 680
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	255, 416
BseNI	ACTGG	3 cut(s)	49, 178, 438
BseXI	GCAGC	4 cut(s)	133, 155, 463, 658
BseYI	CCCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	265
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	4 cut(s)	213, 253, 436, 493
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	2 cut(s)	256, 417
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	4 cut(s)	248, 261, 444, 488
BsrI	ACTGG	3 cut(s)	49, 178, 438
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	4 cut(s)	213, 253, 436, 493
Bst4CI	ACNGT	1 cut(s)	702
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	324, 644, 651
BstDEI	CTNAG	2 cut(s)	264, 425
BstF5I	GGATG	3 cut(s)	311, 559, 680
BstKTI	GATC	4 cut(s)	216, 256, 439, 496
BstMBI	GATC	4 cut(s)	213, 253, 436, 493
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	2 cut(s)	246, 701
BstV1I	GCAGC	4 cut(s)	133, 155, 463, 658
BstX2I	RGATCY	2 cut(s)	253, 436
BstYI	RGATCY	2 cut(s)	253, 436
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	311, 559, 680
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	184, 197
Cac8I	GCNNGC	3 cut(s)	324, 644, 651
CaiI	CAGNNNCTG	1 cut(s)	700
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	558
CviAII	CATG	2 cut(s)	207, 631
CviQI	GTAC	1 cut(s)	558
DdeI	CTNAG	2 cut(s)	264, 425
DpnI	GATC	4 cut(s)	215, 255, 438, 495
DpnII	GATC	4 cut(s)	213, 253, 436, 493
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	221
FaeI	CATG	2 cut(s)	210, 634
FatI	CATG	2 cut(s)	206, 630
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	144, 147, 477, 647
FokI	GGATG	3 cut(s)	298, 566, 687
Fsp4HI	GCNGC	4 cut(s)	144, 147, 477, 647
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	4 cut(s)	144, 147, 477, 647
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	2 cut(s)	66, 110
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	259
Hin1II	CATG	2 cut(s)	210, 634
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	68, 123
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	3 cut(s)	295, 448, 530
Hpy166II	GTNNAC	2 cut(s)	502, 535
Hpy188I	TCNGA	2 cut(s)	391, 426
Hpy188III	TCNNGA	3 cut(s)	163, 315, 661
Hpy8I	GTNNAC	2 cut(s)	502, 535
HpyAV	CCTTC	3 cut(s)	227, 469, 509
HpyCH4III	ACNGT	1 cut(s)	702
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	8 cut(s)	143, 149, 326, 407, 442, 569, 587, 646
HpyF3I	CTNAG	2 cut(s)	264, 425
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	2 cut(s)	210, 634
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	4 cut(s)	213, 253, 436, 493
LmnI	GCTCC	1 cut(s)	527
Lsp1109I	GCAGC	4 cut(s)	133, 155, 463, 658
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	545
MaeIII	GTNAC	2 cut(s)	616, 696
MalI	GATC	4 cut(s)	215, 255, 438, 495
MboI	GATC	4 cut(s)	213, 253, 436, 493
MboII	GAAGA	5 cut(s)	66, 146, 358, 361, 445
MflI	RGATCY	2 cut(s)	253, 436
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	4 cut(s)	176, 259, 397, 422
MroXI	GAANNNNTTC	1 cut(s)	67
MslI	CAYNNNNRTG	1 cut(s)	654
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	259
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	4 cut(s)	213, 253, 436, 493
NlaIII	CATG	2 cut(s)	210, 634
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	616
NspI	RCATGY	1 cut(s)	634
PdmI	GAANNNNTTC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	68, 123
PkrI	GCNGC	4 cut(s)	145, 148, 478, 648
Psp1406I	AACGTT	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	700
PsuI	RGATCY	2 cut(s)	253, 436
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	559
RsaNI	GTAC	1 cut(s)	558
RseI	CAYNNNNRTG	1 cut(s)	654
SatI	GCNGC	4 cut(s)	144, 147, 477, 647
Sau3AI	GATC	4 cut(s)	213, 253, 436, 493
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	320
SfcI	CTRYAG	2 cut(s)	246, 701
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	661
SmoI	CTYRAG	1 cut(s)	661
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	702
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	1 cut(s)	593
TfiI	GAWTC	2 cut(s)	68, 123
TscAI	CASTG	2 cut(s)	184, 204
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	4 cut(s)	143, 146, 476, 646
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	4 cut(s)	60, 66, 147, 389
TspRI	CASTG	2 cut(s)	184, 204
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	5 cut(s)	52, 275, 299, 376, 611
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	2 cut(s)	170, 176
XmnI	GAANNNNTTC	1 cut(s)	67
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.