Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003542.1

Orthogroup ID

OG0016426

Physical Location & Seq

Genomic Coordinates Reverse (-)

47861 .. 48205

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003542.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgcacaagcagaagaggtatatggaactagcagacctgaggttagagggacaattgaggagtgaggaagttgagaagctagtgagtgtagccttgtgttgtgtgcatgtagtgccaccactgaagccatgtatgatcaatgtggttgctatgttggaaggcagattacctgtaggggatccccggactgaggcacttgaatttttatggttttatggtggaaaattcacccaagcatccagaaagcttgcaaggattgttcagttagggaagaagaaactcgttttcttatggcagatgactttacatacctctgattgtagtgaaattgcaaacactgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

114

Amino Acids

13.01

Weight (kDa)

9.0

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342671 RchiOBHm_Chr7g0227281 RchiOBHm_Chr7g0227411
rosa_laevigata	RLG00000001733 RLG00000001735 RLG00000001737 RLG00000001739 RLG00000001742
rosa_multiflora	Rmu_sc0000173.1_g000007 Rmu_sc0003542.1_g000012 Rmu_ssc0000177.1_g000003
rosa_roxburghii	Rroxscaffold_3G00233220
rosa_samantha	Rh7AG391300 Rh7CG410300 Rh7CG468800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	173, 186
AcsI	RAATTY	2 cut(s)	200, 224
AcuI	CTGAAG	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	2 cut(s)	79, 247
AluI	AGCT	2 cut(s)	79, 247
AlwI	GGATC	2 cut(s)	173, 186
ApoI	RAATTY	2 cut(s)	200, 224
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	220
AxyI	CCTNAGG	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	178
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	184
BfaI	CTAG	2 cut(s)	29, 80
BfmI	CTRYAG	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	29, 180
BseRI	GAGGAG	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	135, 178
BspCNI	CTCAG	2 cut(s)	30, 181
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	2 cut(s)	173, 186
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	2 cut(s)	135, 178
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	38, 189
BstF5I	GGATG	1 cut(s)	236
BstKTI	GATC	2 cut(s)	138, 181
BstMBI	GATC	2 cut(s)	135, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
Bsu36I	CCTNAGG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	236
BtsIMutI	CAGTG	2 cut(s)	119, 336
Cac8I	GCNNGC	1 cut(s)	249
CviAII	CATG	2 cut(s)	107, 129
CviJI	RGCY	4 cut(s)	79, 92, 127, 247
CviKI_1	RGCY	4 cut(s)	79, 92, 127, 247
DdeI	CTNAG	2 cut(s)	38, 189
DpnI	GATC	2 cut(s)	137, 180
DpnII	GATC	2 cut(s)	135, 178
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	38
FaeI	CATG	2 cut(s)	110, 132
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	2 cut(s)	106, 128
FbaI	TGATCA	1 cut(s)	135
FokI	GGATG	1 cut(s)	223
FspBI	CTAG	2 cut(s)	29, 80
HapII	CCGG	1 cut(s)	184
Hin1II	CATG	2 cut(s)	110, 132
HindIII	AAGCTT	1 cut(s)	245
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	4, 106, 251, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	2 cut(s)	38, 189
Hsp92II	CATG	2 cut(s)	110, 132
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	135, 178
LpnPI	CCDG	4 cut(s)	50, 183, 197, 253
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	2 cut(s)	29, 80
MalI	GATC	2 cut(s)	137, 180
MboI	GATC	2 cut(s)	135, 178
MboII	GAAGA	3 cut(s)	25, 283, 286
MfeI	CAATTG	1 cut(s)	53
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	4 cut(s)	53, 200, 224, 327
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	7 cut(s)	9, 33, 40, 51, 58, 184, 322
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	184
MunI	CAATTG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	135, 178
NlaIII	CATG	2 cut(s)	110, 132
NlaIV	GGNNCC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	178
Sau3AI	GATC	2 cut(s)	135, 178
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	7 cut(s)	20, 39, 44, 81, 172, 249, 314
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	171
Sse9I	AATT	4 cut(s)	53, 200, 224, 327
SspMI	CTAG	2 cut(s)	29, 80
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	340
TasI	AATT	4 cut(s)	53, 200, 224, 327
TscAI	CASTG	2 cut(s)	126, 343
TspRI	CASTG	2 cut(s)	126, 343
XapI	RAATTY	2 cut(s)	200, 224
XceI	RCATGY	1 cut(s)	110
XspI	CTAG	2 cut(s)	29, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.