RLG00000002387

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018183
Physical Location & Seq
Forward (+)
33252990 .. 33253938
949 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002387

Sequence Viewer

Length: 534 bp
ATGGATCTCCAAGGAGGTGGTCCATCGAGCAATGCTGGGCGACCATGGCAGCATATTTCAACCCCGACGATGCTAACAATGCTCAAGTCTGGAGTTTCGATGGAGGCGGTGGCACGGCTTAGATTGGAGATCAAGGTTGGTTTTGAAGGCCACGACGAGGTAGTTTTCTCGGACCAAGACGGCGATATGGTGGTGCGCCGGAGAAAAGACCGGCCCTATCTGAGAAGGCGGAGGAGAAGAAGGAGAAGGCAGCGGTGCGGAATTAGGAAGGCAGAGAAGAAGAAGGAGCAGGCAGCGAGGGATGTTGTCATGTGGAATATAGTGATGACTCTGTTGATGAAGAGAGATGATATAGAGGAAGCTTATGATTTGATTTCGGGGATGCCGGATAGAAGTGTGAGGTCATGGACGCTGATGATTTCAGGGTTTGAGGAAGATGACCATGCGAGAATGAGATTATGTAAGTGCAAGGACGACGACGCTGGAATCGACATCGTTGTCCAGGCTGTCGTCGACGGCATTGAGATCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.42

Weight (kDa)

9.29

Isoelectric Point (pI)

75.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 100 - 141 3.7e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 497
AccI GTMKAC 1 cut(s) 513
AciI CCGC 4 cut(s) 107, 229, 253, 258
AclWI GGATC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 60, 146
AjnI CCWGG 1 cut(s) 501
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 148, 212
ApeKI GCWGC 3 cut(s) 49, 250, 293
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 3 cut(s) 20, 172, 213
AvaII GGWCC 2 cut(s) 20, 172
BbvI GCAGC 3 cut(s) 61, 262, 305
BccI CCATC 2 cut(s) 31, 94
BceAI ACGGC 3 cut(s) 131, 196, 532
BcgI CGANNNNNNTGC 1 cut(s) 508
BciT130I CCWGG 1 cut(s) 503
BisI GCNGC 3 cut(s) 50, 251, 294
BlsI GCNGC 3 cut(s) 51, 252, 295
Bme1390I CCNGG 1 cut(s) 503
Bme18I GGWCC 2 cut(s) 20, 172
BmgT120I GGNCC 3 cut(s) 20, 172, 213
BmrFI CCNGG 1 cut(s) 503
BmsI GCATC 2 cut(s) 60, 372
BpmI CTGGAG 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 10, 44
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 2 cut(s) 10, 44
BseGI GGATG 2 cut(s) 307, 387
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 247
BseXI GCAGC 3 cut(s) 61, 262, 305
BseYI CCCAGC 1 cut(s) 35
BshFI GGCC 2 cut(s) 150, 214
BsiSI CCGG 3 cut(s) 199, 211, 386
BslI CCNNNNNNNGG 1 cut(s) 157
BsnI GGCC 2 cut(s) 150, 214
Bsp143I GATC 3 cut(s) 4, 129, 525
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 4 cut(s) 107, 229, 253, 258
BspANI GGCC 2 cut(s) 150, 214
BspCNI CTCAG 1 cut(s) 213
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 10, 44
BssMI GATC 3 cut(s) 4, 129, 525
BssT1I CCWWGG 2 cut(s) 10, 44
Bst2UI CCWGG 1 cut(s) 503
Bst6I CTCTTC 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 119, 221
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 2 cut(s) 307, 387
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 3 cut(s) 7, 132, 528
BstMBI GATC 3 cut(s) 4, 129, 525
BstMWI GCNNNNNNNGC 2 cut(s) 46, 79
BstNI CCWGG 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 501
BstV1I GCAGC 3 cut(s) 61, 262, 305
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 150, 214
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 2 cut(s) 307, 387
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 20, 172, 213
CseI GACGC 2 cut(s) 418, 488
CviAII CATG 4 cut(s) 45, 310, 405, 443
CviJI RGCY 5 cut(s) 118, 150, 214, 362, 506
CviKI_1 RGCY 5 cut(s) 118, 150, 214, 362, 506
DdeI CTNAG 2 cut(s) 119, 221
DpnI GATC 3 cut(s) 6, 131, 527
DpnII GATC 3 cut(s) 4, 129, 525
DrdI GACNNNNNNGTC 1 cut(s) 497
DseDI GACNNNNNNGTC 1 cut(s) 497
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
EciI GGCGGA 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 10, 44
Eco47I GGWCC 2 cut(s) 20, 172
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 2 cut(s) 10, 44
ErhI CCWWGG 2 cut(s) 10, 44
FaeI CATG 4 cut(s) 48, 313, 408, 446
FatI CATG 4 cut(s) 44, 309, 404, 442
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 3 cut(s) 50, 251, 294
FokI GGATG 2 cut(s) 314, 394
Fsp4HI GCNGC 3 cut(s) 50, 251, 294
GlaI GCGC 1 cut(s) 197
GluI GCNGC 3 cut(s) 50, 251, 294
GsaI CCCAGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 2 cut(s) 150, 214
HapII CCGG 3 cut(s) 199, 211, 386
HgaI GACGC 2 cut(s) 418, 488
HhaI GCGC 1 cut(s) 198
Hin1II CATG 4 cut(s) 48, 313, 408, 446
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 2 cut(s) 328, 486
HpaII CCGG 3 cut(s) 199, 211, 386
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 2 cut(s) 172, 222
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 514
Hpy99I CGWCG 6 cut(s) 70, 158, 479, 482, 515, 518
HpyAV CCTTC 6 cut(s) 140, 219, 234, 240, 262, 277
HpyCH4V TGCA 1 cut(s) 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 79
HpyF3I CTNAG 2 cut(s) 119, 221
Hsp92II CATG 4 cut(s) 48, 313, 408, 446
HspAI GCGC 1 cut(s) 196
Kzo9I GATC 3 cut(s) 4, 129, 525
LmnI GCTCC 1 cut(s) 286
Lsp1109I GCAGC 3 cut(s) 61, 262, 305
LweI GCATC 2 cut(s) 60, 372
MalI GATC 3 cut(s) 6, 131, 527
MboI GATC 3 cut(s) 4, 129, 525
MboII GAAGA 5 cut(s) 249, 289, 292, 352, 446
MflI RGATCY 1 cut(s) 4
MluCI AATT 1 cut(s) 261
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 8 cut(s) 8, 97, 151, 225, 291, 349, 393, 424
MspA1I CMGCKG 1 cut(s) 253
MspI CCGG 3 cut(s) 199, 211, 386
MspR9I CCNGG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 2 cut(s) 46, 79
NcoI CCATGG 1 cut(s) 44
NdeII GATC 3 cut(s) 4, 129, 525
NlaIII CATG 4 cut(s) 48, 313, 408, 446
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PfeI GAWTC 1 cut(s) 486
PkrI GCNGC 3 cut(s) 51, 252, 295
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 501
PspFI CCCAGC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 501
PspPI GGNCC 3 cut(s) 20, 172, 213
PsuI RGATCY 1 cut(s) 4
SalI GTCGAC 1 cut(s) 512
SatI GCNGC 3 cut(s) 50, 251, 294
Sau3AI GATC 3 cut(s) 4, 129, 525
Sau96I GGNCC 3 cut(s) 20, 172, 213
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 503
SetI ASST 5 cut(s) 19, 138, 162, 364, 404
SfaNI GCATC 2 cut(s) 60, 372
SgrDI CGTCGACG 1 cut(s) 512
SinI GGWCC 2 cut(s) 20, 172
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 261
SsiI CCGC 4 cut(s) 107, 229, 253, 258
StyD4I CCNGG 1 cut(s) 501
StyI CCWWGG 2 cut(s) 10, 44
TaqI TCGA 4 cut(s) 26, 98, 489, 513
TasI AATT 1 cut(s) 261
TfiI GAWTC 1 cut(s) 486
TseI GCWGC 3 cut(s) 49, 250, 293
TspDTI ATGAA 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 20, 172
XmiI GTMKAC 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.