Rmu_sc0035370.1_g000002

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035370.1
OG0018183
Physical Location & Seq
Forward (+)
565 .. 1000
436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035370.1_g000002.1.cds

Sequence Viewer

Length: 315 bp
atgtcgcaaagggatgttgtcatgtggaacataatgatgactctgttgatgaagagaggtgatatagaggaagcttatgatttgatttcaaggatgccggatagaagtcagttcttgcggcttgtgctgatttggatcgaagaggaatatgacgatgggagaatgagattatgtaagtgcaaagacgacggcgttggaatcgacgtcattgtccaggctatcgtcaacggcgttgagatcgtgcagagagctgacaatgaaggaattgggcggctgaagacctgcactagaaccctattccccatttcaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

104

Amino Acids

12.05

Weight (kDa)

4.92

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AatII GACGTC 1 cut(s) 207
Acc36I ACCTGC 1 cut(s) 290
AciI CCGC 2 cut(s) 118, 271
AclWI GGATC 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 204
AgsI TTSAA 2 cut(s) 90, 309
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 2 cut(s) 74, 251
AluI AGCT 2 cut(s) 74, 251
AlwI GGATC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 284
BccI CCATC 1 cut(s) 149
BceAI ACGGC 2 cut(s) 205, 244
BciT130I CCWGG 1 cut(s) 215
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 290
BisI GCNGC 2 cut(s) 119, 272
BlsI GCNGC 2 cut(s) 120, 273
Bme1390I CCNGG 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 134
BseBI CCWGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 19, 99
BseJI GATNNNNATC 1 cut(s) 134
BsgI GTGCAG 2 cut(s) 263, 268
BsiSI CCGG 1 cut(s) 98
Bsp143I GATC 2 cut(s) 135, 237
BspACI CCGC 2 cut(s) 118, 271
BspMI ACCTGC 1 cut(s) 290
BspPI GGATC 1 cut(s) 143
BssMI GATC 2 cut(s) 135, 237
BssNI GRCGYC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 215
Bst6I CTCTTC 2 cut(s) 47, 135
BstACI GRCGYC 1 cut(s) 204
BstF5I GGATG 2 cut(s) 19, 99
BstKTI GATC 2 cut(s) 138, 240
BstMBI GATC 2 cut(s) 135, 237
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 284
BtsCI GGATG 2 cut(s) 19, 99
BveI ACCTGC 1 cut(s) 290
CviAII CATG 1 cut(s) 22
CviJI RGCY 5 cut(s) 74, 121, 218, 251, 274
CviKI_1 RGCY 5 cut(s) 74, 121, 218, 251, 274
DpnI GATC 2 cut(s) 137, 239
DpnII GATC 2 cut(s) 135, 237
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 2 cut(s) 47, 135
EarI CTCTTC 2 cut(s) 47, 135
Eco57I CTGAAG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 25
FaiI YATR 6 cut(s) 23, 32, 65, 78, 150, 172
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 119, 272
FokI GGATG 2 cut(s) 26, 106
Fsp4HI GCNGC 2 cut(s) 119, 272
FspBI CTAG 1 cut(s) 288
GluI GCNGC 2 cut(s) 119, 272
HapII CCGG 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 1 cut(s) 25
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 2 cut(s) 40, 198
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 2 cut(s) 191, 206
HpyAV CCTTC 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 180, 244, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 1 cut(s) 25
Kzo9I GATC 2 cut(s) 135, 237
LpnPI CCDG 4 cut(s) 111, 200, 227, 295
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 204
MalI GATC 2 cut(s) 137, 239
MboI GATC 2 cut(s) 135, 237
MboII GAAGA 3 cut(s) 64, 152, 289
MluCI AATT 2 cut(s) 264, 310
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 3 cut(s) 50, 61, 136
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 124
NdeII GATC 2 cut(s) 135, 237
NlaIII CATG 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 2 cut(s) 120, 273
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 2 cut(s) 119, 272
Sau3AI GATC 2 cut(s) 135, 237
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 215
SetI ASST 5 cut(s) 61, 76, 207, 253, 284
SfaNI GCATC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 2 cut(s) 264, 310
SsiI CCGC 2 cut(s) 118, 271
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 213
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 138, 201
TasI AATT 2 cut(s) 264, 310
TauI GCSGC 2 cut(s) 121, 274
TfiI GAWTC 1 cut(s) 198
TspDTI ATGAA 2 cut(s) 65, 273
XspI CTAG 1 cut(s) 288
ZraI GACGTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.