RLG00000015083

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018183
Physical Location & Seq
Reverse (-)
61482176 .. 61483028
853 bp
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UTR
Exon/CDS
Intron
RLM00000015083

Sequence Viewer

Length: 408 bp
ATGCTCAAGTCTGGAGTTTCGATGGAGGCGGTAGCGCAGCTTAGATTAGAGGAAATTAGGGATGCACGATTGATGTTTGATAAAATATCGCAGAGGGATGTTGTCATGTGGAATATAATGATGATTCTGTTGATGAAGAGAGGTGATATAGAGGAAGCTTATGATTTGATTTCGAGGATGCCGGACAGAAGTGTGAGGTCATGGATGGTGATGATTTTGGGGTTTGGTTATTGCGAGGAAGATGACAATGGGAGAATGAGATTGTGTAAGTGTAAGGATGACGGCGCTGGAATTGACGTCATTGTCCAGGCTGTCGTCGACGGCGTTGAGATATTGCAGAAAGCTGCCGATGAAGGAATTGGGCGGCGGAAGAGCTGCACCGGAACCCTATTCCCCATTTCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

136

Amino Acids

15.28

Weight (kDa)

5.05

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 32 - 65 1e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AatII GACGTC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 318
AciI CCGC 3 cut(s) 29, 364, 367
AcyI GRCGYC 1 cut(s) 297
AgsI TTSAA 1 cut(s) 402
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 4 cut(s) 40, 158, 344, 375
AluI AGCT 4 cut(s) 40, 158, 344, 375
ApeKI GCWGC 3 cut(s) 37, 344, 375
AspLEI GCGC 2 cut(s) 37, 287
AsuHPI GGTGA 2 cut(s) 155, 220
BbvI GCAGC 3 cut(s) 49, 331, 362
BccI CCATC 2 cut(s) 16, 199
BceAI ACGGC 2 cut(s) 298, 337
BciT130I CCWGG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 288
BisI GCNGC 4 cut(s) 38, 345, 365, 376
BlsI GCNGC 4 cut(s) 39, 346, 366, 377
Bme1390I CCNGG 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 52, 168
BpmI CTGGAG 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 380
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 5 cut(s) 67, 103, 183, 210, 283
BseXI GCAGC 3 cut(s) 49, 331, 362
BsgI GTGCAG 1 cut(s) 361
BsiSI CCGG 2 cut(s) 182, 381
BspACI CCGC 3 cut(s) 29, 364, 367
BspLI GGNNCC 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 365
BssNI GRCGYC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 308
Bst6I CTCTTC 2 cut(s) 131, 365
BstACI GRCGYC 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 5 cut(s) 67, 103, 183, 210, 283
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 2 cut(s) 37, 287
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstV1I GCAGC 3 cut(s) 49, 331, 362
BtsCI GGATG 5 cut(s) 67, 103, 183, 210, 283
CfoI GCGC 2 cut(s) 37, 287
CviAII CATG 2 cut(s) 106, 201
CviJI RGCY 5 cut(s) 40, 158, 311, 344, 375
CviKI_1 RGCY 5 cut(s) 40, 158, 311, 344, 375
DdeI CTNAG 1 cut(s) 41
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eam1104I CTCTTC 2 cut(s) 131, 365
EarI CTCTTC 2 cut(s) 131, 365
EciI GGCGGA 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 109, 204
FaiI YATR 5 cut(s) 107, 116, 149, 162, 202
FatI CATG 2 cut(s) 105, 200
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 4 cut(s) 38, 345, 365, 376
FokI GGATG 5 cut(s) 74, 110, 190, 217, 290
Fsp4HI GCNGC 4 cut(s) 38, 345, 365, 376
GlaI GCGC 2 cut(s) 36, 286
GluI GCNGC 4 cut(s) 38, 345, 365, 376
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 288
HapII CCGG 2 cut(s) 182, 381
HhaI GCGC 2 cut(s) 37, 287
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 2 cut(s) 109, 204
Hin6I GCGC 2 cut(s) 35, 285
HinP1I GCGC 2 cut(s) 35, 285
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 1 cut(s) 124
HpaII CCGG 2 cut(s) 182, 381
HphI GGTGA 2 cut(s) 155, 220
Hpy166II GTNNAC 1 cut(s) 319
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 2 cut(s) 320, 323
HpyAV CCTTC 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 65, 337, 378
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 109, 204
HspAI GCGC 2 cut(s) 35, 285
LguI GCTCTTC 1 cut(s) 365
LpnPI CCDG 5 cut(s) 195, 273, 293, 320, 394
Lsp1109I GCAGC 3 cut(s) 49, 331, 362
LweI GCATC 2 cut(s) 52, 168
MaeII ACGT 1 cut(s) 297
MboII GAAGA 3 cut(s) 148, 251, 382
MluCI AATT 4 cut(s) 54, 291, 357, 403
MnlI CCTC 8 cut(s) 19, 43, 87, 134, 145, 168, 189, 229
MspI CCGG 2 cut(s) 182, 381
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
NlaIII CATG 2 cut(s) 109, 204
NlaIV GGNNCC 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 4 cut(s) 39, 346, 366, 377
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 385
SalI GTCGAC 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 365
SatI GCNGC 4 cut(s) 38, 345, 365, 376
ScrFI CCNGG 1 cut(s) 308
SetI ASST 7 cut(s) 42, 145, 160, 200, 300, 346, 377
SfaNI GCATC 2 cut(s) 52, 168
SgrDI CGTCGACG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 4 cut(s) 54, 291, 357, 403
SsiI CCGC 3 cut(s) 29, 364, 367
StyD4I CCNGG 1 cut(s) 306
TaiI ACGT 1 cut(s) 300
TaqI TCGA 3 cut(s) 20, 173, 318
TasI AATT 4 cut(s) 54, 291, 357, 403
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 1 cut(s) 124
TseI GCWGC 3 cut(s) 37, 344, 375
TspDTI ATGAA 2 cut(s) 149, 366
XmiI GTMKAC 1 cut(s) 318
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.