RLG00000009748

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018183
Physical Location & Seq
Reverse (-)
57299294 .. 57300168
875 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009748

Sequence Viewer

Length: 492 bp
ATGGAGGTGGTGGCGCGGCTTAGATCGGAGGCCACAACGGGGCAGTTTTCCAGGACCAAGACGGGGATATGGTGGTGCGCTGGAGGAAAGACCGCCCTATCTGAGAAGGCGGTGGAGAAGAAGGAGAAGGCAGCAGATGATCTGACTGGGTTTCAGAAAAGATCTGAGCTTTGTCGAGAAGCACAGAGAGATGTTGTCATGTGGAACATAGTGATGACTCTGTTGATAAAGAGAGGTGATATAGAGGAAGCTTATGATTTGATTTCAGGGATGCCGGATAGAAGTGTGAGGTCATGGACGCTGATGATTTTGGGGTTTGAGGAAGATGACGATGGGAGAATGAGATTATGTAAGTGCAAGGACGACGGCGCTGGAATCGACGTCGTTGTCCAGGCTGTCATCGACGGCGTTGAGATCGTGCAGAGAACTGCCGATGAAGGAATTGGGCGGCAGAAGACCTGCACCGAAATCCTATTCCCCATTTCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.22

Weight (kDa)

5.06

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 63 - 96 2.5e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 386
AatII GACGTC 1 cut(s) 384
Acc36I ACCTGC 1 cut(s) 467
AccII CGCG 1 cut(s) 16
AciI CCGC 4 cut(s) 16, 93, 110, 448
AcyI GRCGYC 1 cut(s) 381
AfiI CCNNNNNNNGG 2 cut(s) 39, 63
AgsI TTSAA 1 cut(s) 486
AjnI CCWGG 2 cut(s) 50, 390
AluBI AGCT 2 cut(s) 169, 251
AluI AGCT 2 cut(s) 169, 251
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 131
AspLEI GCGC 3 cut(s) 16, 80, 371
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 461
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 326
BceAI ACGGC 2 cut(s) 382, 421
BciT130I CCWGG 2 cut(s) 52, 392
BfoI RGCGCY 1 cut(s) 372
BfuAI ACCTGC 1 cut(s) 467
BglII AGATCT 1 cut(s) 161
BisI GCNGC 3 cut(s) 17, 132, 449
BlsI GCNGC 3 cut(s) 18, 133, 450
Bme1390I CCNGG 2 cut(s) 52, 392
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 2 cut(s) 52, 392
BmrI ACTGGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 261
BmuI ACTGGG 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 461
BpmI CTGGAG 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 381
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 63
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 2 cut(s) 52, 392
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 39, 63
BseMII CTCAG 2 cut(s) 93, 156
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 143
BsgI GTGCAG 2 cut(s) 440, 445
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 2 cut(s) 39, 63
BsnI GGCC 1 cut(s) 32
Bsp143I GATC 4 cut(s) 23, 139, 161, 414
BspACI CCGC 4 cut(s) 16, 93, 110, 448
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 94, 157
BspFNI CGCG 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 467
BsrI ACTGG 1 cut(s) 151
BssMI GATC 4 cut(s) 23, 139, 161, 414
BssNI GRCGYC 1 cut(s) 381
Bst2UI CCWGG 2 cut(s) 52, 392
BstACI GRCGYC 1 cut(s) 381
BstDEI CTNAG 3 cut(s) 20, 102, 165
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 16
BstH2I RGCGCY 1 cut(s) 372
BstHHI GCGC 3 cut(s) 16, 80, 371
BstKTI GATC 4 cut(s) 26, 142, 164, 417
BstMBI GATC 4 cut(s) 23, 139, 161, 414
BstNI CCWGG 2 cut(s) 52, 392
BstSCI CCNGG 2 cut(s) 50, 390
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 461
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 276
BveI ACCTGC 1 cut(s) 467
CfoI GCGC 3 cut(s) 16, 80, 371
Cfr13I GGNCC 1 cut(s) 54
CseI GACGC 1 cut(s) 307
CviAII CATG 2 cut(s) 199, 294
CviJI RGCY 5 cut(s) 19, 32, 169, 251, 395
CviKI_1 RGCY 5 cut(s) 19, 32, 169, 251, 395
DdeI CTNAG 3 cut(s) 20, 102, 165
DpnI GATC 4 cut(s) 25, 141, 163, 416
DpnII GATC 4 cut(s) 23, 139, 161, 414
DrdI GACNNNNNNGTC 1 cut(s) 386
DseDI GACNNNNNNGTC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 54
EcoRII CCWGG 2 cut(s) 50, 390
FaeI CATG 2 cut(s) 202, 297
FaiI YATR 7 cut(s) 70, 200, 209, 242, 255, 295, 349
FatI CATG 2 cut(s) 198, 293
Fnu4HI GCNGC 3 cut(s) 17, 132, 449
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 17, 132, 449
GlaI GCGC 3 cut(s) 15, 79, 370
GluI GCNGC 3 cut(s) 17, 132, 449
GsuI CTGGAG 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 372
HaeIII GGCC 1 cut(s) 32
HapII CCGG 1 cut(s) 275
HgaI GACGC 1 cut(s) 307
HhaI GCGC 3 cut(s) 16, 80, 371
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 2 cut(s) 202, 297
Hin6I GCGC 3 cut(s) 14, 78, 369
HinP1I GCGC 3 cut(s) 14, 78, 369
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 2 cut(s) 217, 375
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 5 cut(s) 28, 103, 144, 156, 166
Hpy188III TCNNGA 1 cut(s) 176
Hpy99I CGWCG 4 cut(s) 368, 383, 386, 407
HpyAV CCTTC 4 cut(s) 100, 115, 121, 431
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 3 cut(s) 357, 421, 462
HpyF3I CTNAG 3 cut(s) 20, 102, 165
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 2 cut(s) 202, 297
HspAI GCGC 3 cut(s) 14, 78, 369
Kzo9I GATC 4 cut(s) 23, 139, 161, 414
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 261
MaeII ACGT 1 cut(s) 381
MalI GATC 4 cut(s) 25, 141, 163, 416
MboI GATC 4 cut(s) 23, 139, 161, 414
MboII GAAGA 3 cut(s) 130, 335, 466
MflI RGATCY 1 cut(s) 161
MluCI AATT 2 cut(s) 441, 487
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 6 cut(s) 22, 77, 227, 238, 282, 313
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 2 cut(s) 52, 392
MvaI CCWGG 2 cut(s) 52, 392
MvnI CGCG 1 cut(s) 16
NdeII GATC 4 cut(s) 23, 139, 161, 414
NlaIII CATG 2 cut(s) 202, 297
PfeI GAWTC 1 cut(s) 375
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 3 cut(s) 18, 133, 450
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 2 cut(s) 50, 390
PspGI CCWGG 2 cut(s) 50, 390
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 212
SatI GCNGC 3 cut(s) 17, 132, 449
Sau3AI GATC 4 cut(s) 23, 139, 161, 414
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 2 cut(s) 52, 392
SetI ASST 7 cut(s) 9, 171, 238, 253, 293, 384, 461
SfaNI GCATC 1 cut(s) 261
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 2 cut(s) 441, 487
SsiI CCGC 4 cut(s) 16, 93, 110, 448
StyD4I CCNGG 2 cut(s) 50, 390
TaiI ACGT 1 cut(s) 384
TaqI TCGA 3 cut(s) 175, 378, 402
TasI AATT 2 cut(s) 441, 487
TauI GCSGC 2 cut(s) 19, 451
TfiI GAWTC 1 cut(s) 375
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 54
ZraI GACGTC 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.