RLG00000006021

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018599
Physical Location & Seq
Forward (+)
3632615 .. 3633086
472 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006021

Sequence Viewer

Length: 387 bp
ATGATCAATGTCTATCCATACCATGCATATGCTGCCGACCGGACCCACGTTCCCTTGGACTATGCTCTCTTTAATGCAACTGCTGTGGTACATGATGGGCAATTGGCCTACAACAACCTTTTCGATGCTACGGTGGAATATTCATTCTCCTGGACAATGGAGAAAGCAGGGTATCGAAATGCGAAGATCGTGTCAGGAGAGGGAACCCTCAAAAGACCTAACGATACTTTTGGAGCATTTATATATGCTCATCGTGGTCTTTTGGGGGTTCCCACTCCTGACTTCATCCGTTGTACCAAGTTCTTGTTATATGTTTCTGCAACTTCTGGGACAGCGCCGGTGCGAGGCCAGCCAGTCTCAGACACCACAGTATTCACAACAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

129

Amino Acids

14.14

Weight (kDa)

6.89

Isoelectric Point (pI)

20.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 2 - 67 2e-10 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018599)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442261
rosa_laevigata RLG00000006021
rosa_multiflora Rmu_sc0000124.1_g000058
rosa_roxburghii Rroxscaffold_5G00383320
rosa_rugosa Rorug04G0340100
rosa_samantha Rh4AG391700 Rh4AG393200 Rh4CG420400 Rh4DG398500 Rh4DG400200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 90, 295
AfiI CCNNNNNNNGG 1 cut(s) 344
AjnI CCWGG 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 361
AoxI GGCC 2 cut(s) 105, 346
ApeKI GCWGC 1 cut(s) 32
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 42
AvaII GGWCC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 1 cut(s) 385
BfoI RGCGCY 1 cut(s) 338
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 3 cut(s) 44, 205, 270
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 2 cut(s) 107, 348
BsiEI CGRYCG 1 cut(s) 40
BsiSI CCGG 2 cut(s) 40, 338
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 361
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 2 cut(s) 107, 348
Bsp143I GATC 2 cut(s) 3, 186
BspANI GGCC 2 cut(s) 107, 348
BspCNI CTCAG 1 cut(s) 371
BspLI GGNNCC 3 cut(s) 44, 205, 270
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 2 cut(s) 3, 186
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 133, 370
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 358
BstF5I GGATG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 2 cut(s) 6, 189
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 2 cut(s) 3, 186
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 32, 349
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 107, 348
BtsCI GGATG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 350
CfoI GCGC 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 89, 294
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 2 cut(s) 23, 92
CviJI RGCY 3 cut(s) 107, 348, 352
CviKI_1 RGCY 3 cut(s) 107, 348, 352
CviQI GTAC 2 cut(s) 89, 294
DdeI CTNAG 1 cut(s) 358
DpnI GATC 2 cut(s) 5, 188
DpnII GATC 2 cut(s) 3, 186
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 26, 95
FaqI GGGAC 1 cut(s) 343
FatI CATG 2 cut(s) 22, 91
FauNDI CATATG 1 cut(s) 28
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 1 cut(s) 385
GlaI GCGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 2 cut(s) 107, 348
HapII CCGG 2 cut(s) 40, 338
HhaI GCGC 1 cut(s) 337
Hin1II CATG 2 cut(s) 26, 95
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HpaII CCGG 2 cut(s) 40, 338
Hpy188I TCNGA 1 cut(s) 361
Hpy188III TCNNGA 2 cut(s) 195, 278
HpyCH4III ACNGT 2 cut(s) 133, 370
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 3 cut(s) 26, 77, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 349
HpyF3I CTNAG 1 cut(s) 358
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 2 cut(s) 26, 95
HspAI GCGC 1 cut(s) 335
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 186
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 385
MaeII ACGT 1 cut(s) 48
MalI GATC 2 cut(s) 5, 188
MboI GATC 2 cut(s) 3, 186
MboII GAAGA 1 cut(s) 196
MfeI CAATTG 1 cut(s) 101
MluCI AATT 1 cut(s) 101
MnlI CCTC 3 cut(s) 193, 218, 338
Mph1103I ATGCAT 1 cut(s) 28
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 2 cut(s) 40, 338
MspR9I CCNGG 1 cut(s) 151
MunI CAATTG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 32, 349
NdeI CATATG 1 cut(s) 28
NdeII GATC 2 cut(s) 3, 186
NlaIII CATG 2 cut(s) 26, 95
NlaIV GGNNCC 3 cut(s) 44, 205, 270
NsiI ATGCAT 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 3 cut(s) 44, 205, 270
PspPI GGNCC 1 cut(s) 42
RsaI GTAC 2 cut(s) 90, 295
RsaNI GTAC 2 cut(s) 89, 294
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 3, 186
Sau96I GGNCC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 151
SetI ASST 4 cut(s) 51, 120, 220, 386
SfaNI GCATC 1 cut(s) 115
SgrAI CRCCGGYG 1 cut(s) 337
SinI GGWCC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 1 cut(s) 101
SspI AATATT 1 cut(s) 140
SspMI CTAG 1 cut(s) 385
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 133, 370
TaiI ACGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 123, 175
TasI AATT 1 cut(s) 101
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 132, 274
TspGWI ACGGA 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 42
XspI CTAG 1 cut(s) 385
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.