Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000124.1

Orthogroup ID

OG0018599

Physical Location & Seq

Genomic Coordinates Forward (+)

251939 .. 252400

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000124.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgatcaatgtctatccatactatgcatatgctgccgaccgaagccacgttcccttggactacgctctctttaatgcaaccgcccctgtggttcatgatggggaattggcctaccagaaccttttcgatgctatggtggattcattctactgggcaatggagaaagcagagtaccgaaatgtgagtatcgtggtgtctgagactggctggcctcgcactggcactatcccagaagttgcagaaacatatagccggaacttggtgaaacggatgaaatcaggagtgggaacccccaaaagacctaacgatacttttggagcgtttatatatgcgtaccacgatgggccacatcattcttttggagttttccatccaaacgacaccgaccggcctttttatgcatttccaaggcgggaggcgccctgtaatgcatatatagtagggctggatttggtacggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

153

Amino Acids

17.44

Weight (kDa)

6.03

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018599)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0442261
rosa_laevigata	RLG00000006021
rosa_multiflora	Rmu_sc0000124.1_g000058
rosa_roxburghii	Rroxscaffold_5G00383320
rosa_rugosa	Rorug04G0340100
rosa_samantha	Rh4AG391700 Rh4AG393200 Rh4CG420400 Rh4DG398500 Rh4DG400200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AciI	CCGC	2 cut(s)	81, 412
AcyI	GRCGYC	1 cut(s)	419
AfaI	GTAC	3 cut(s)	173, 335, 456
AfiI	CCNNNNNNNGG	2 cut(s)	218, 259
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	4 cut(s)	108, 209, 344, 389
ApeKI	GCWGC	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	3 cut(s)	92, 335, 378
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	194
BfoI	RGCGCY	1 cut(s)	422
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	289, 420
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	160
BsaHI	GRCGYC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	54, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 259
Bse118I	RCCGGY	1 cut(s)	387
Bse1I	ACTGG	3 cut(s)	155, 208, 223
Bse3DI	GCAATG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	54, 407
BseGI	GGATG	2 cut(s)	276, 370
BseLI	CCNNNNNNNGG	2 cut(s)	218, 259
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	155, 208, 223
BseXI	GCAGC	1 cut(s)	19
Bsh1285I	CGRYCG	2 cut(s)	40, 388
BshFI	GGCC	4 cut(s)	110, 211, 346, 391
BshNI	GGYRCC	1 cut(s)	418
BsiEI	CGRYCG	2 cut(s)	40, 388
BsiSI	CCGG	2 cut(s)	253, 388
BslI	CCNNNNNNNGG	2 cut(s)	218, 259
BsmAI	GTCTC	1 cut(s)	194
BsnI	GGCC	4 cut(s)	110, 211, 346, 391
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	81, 412
BspANI	GGCC	4 cut(s)	110, 211, 346, 391
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	289, 420
BspT107I	GGYRCC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	387
BsrI	ACTGG	3 cut(s)	155, 208, 223
BssAI	RCCGGY	1 cut(s)	387
BssECI	CCNNGG	2 cut(s)	54, 407
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	419
BssT1I	CCWWGG	2 cut(s)	54, 407
Bst4CI	ACNGT	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	276, 370
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	2 cut(s)	40, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 213, 418
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	4 cut(s)	110, 211, 346, 391
BtsCI	GGATG	2 cut(s)	276, 370
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	209
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	3 cut(s)	172, 334, 455
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	8 cut(s)	45, 110, 207, 211, 252, 346, 391, 445
CviKI_1	RGCY	8 cut(s)	45, 110, 207, 211, 252, 346, 391, 445
CviQI	GTAC	3 cut(s)	172, 334, 455
DdeI	CTNAG	1 cut(s)	198
DinI	GGCGCC	1 cut(s)	420
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	54, 407
EcoT14I	CCWWGG	2 cut(s)	54, 407
EcoT22I	ATGCAT	3 cut(s)	28, 403, 433
EgeI	GGCGCC	1 cut(s)	420
EheI	GGCGCC	1 cut(s)	420
ErhI	CCWWGG	2 cut(s)	54, 407
FaeI	CATG	1 cut(s)	98
FatI	CATG	1 cut(s)	94
FauI	CCCGC	1 cut(s)	405
FauNDI	CATATG	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	283, 357
Fsp4HI	GCNGC	1 cut(s)	33
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	4 cut(s)	110, 211, 346, 391
HapII	CCGG	2 cut(s)	253, 388
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	2 cut(s)	253, 388
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	95, 279
HpyCH4III	ACNGT	1 cut(s)	459
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	26, 77, 239, 401, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 213, 418
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	1 cut(s)	98
HspAI	GCGC	1 cut(s)	419
KasI	GGCGCC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	118
MaeII	ACGT	1 cut(s)	48
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MluCI	AATT	1 cut(s)	104
Mly113I	GGCGCC	1 cut(s)	419
MnlI	CCTC	2 cut(s)	222, 409
Mph1103I	ATGCAT	3 cut(s)	28, 403, 433
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	1 cut(s)	72
MspI	CCGG	2 cut(s)	253, 388
MwoI	GCNNNNNNNGC	3 cut(s)	32, 213, 418
NarI	GGCGCC	1 cut(s)	419
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	289, 420
NsiI	ATGCAT	3 cut(s)	28, 403, 433
PagI	TCATGA	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	34
PluTI	GGCGCC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	289, 420
PspPI	GGNCC	1 cut(s)	344
RsaI	GTAC	3 cut(s)	173, 335, 456
RsaNI	GTAC	3 cut(s)	172, 334, 455
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	344
SetI	ASST	3 cut(s)	51, 123, 304
SfaNI	GCATC	1 cut(s)	118
SfoI	GGCGCC	1 cut(s)	420
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	2 cut(s)	81, 412
SspDI	GGCGCC	1 cut(s)	418
StyI	CCWWGG	2 cut(s)	54, 407
TaaI	ACNGT	1 cut(s)	459
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	126
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	83, 132, 287
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	122
Zsp2I	ATGCAT	3 cut(s)	28, 403, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.