Rroxscaffold_5G00383320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018599
Physical Location & Seq
Reverse (-)
62937671 .. 62940063
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383320.1

Sequence Viewer

Length: 762 bp
ATGGCTGGCCATCATCAAGTTCCGGTTCCGGTTCAGCCGGAGGTCCAAAATGCTCATCCCCGACGATGGGCTGATCTGTTCAAGCAGAAAGACCAGATTGAAAATTCCCAAGGAGGAGGCACCGCTGCCGGAATAGACGAGGTACAGGTTCAAATTTCAAGCACCGGAGGTAAGCGTTTCAATTTACACGAATATTCTTCTCGTTTGGGGGTTTCTGGCTTCCTCGGGTTTCTTTATATTTTTCTTGTGATTTTGTTGCAGATCGAAATCCAAAACGCTCCTCCTCCAAGATGGGTTGATCTATTCAAGCAAGGCGAAGAAGTGCATCAAGCAGCTCCTGACAAGCCGGGAGAAGAAACTTGTTCTCGAGGGATATATGTAAACGCTCAACCGTTAACTCTTCGAAACAGTTTTTTCTCTGCTGCAACACAGTGCAATGACACAGGACGAAGTTTCGCCGAGAGCTCCCATGGCATATATGCTGATAAATCTCCTCTGATGGAGCCACAGAAGGGGAAAAGAGAAGATTTCTTTTGGCTACACATATGGAATTGGTCCAAAAACAGCTGTCATTTAACTGTTGGAGCGTTTATATATGCTCGTCGTGGTCTTTTGGGGCTTCCCACTCCTGACTTCATCCGTTGTACCAAGTTCTTGTTATATGTTTCTGCAACTTCTGGGACAATGCCAGGGCGAGGCCAGCCAGTCTCAGAAACCACAATATTCACAACAACCTTTTCGATGATTATGACAATCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.26

Weight (kDa)

8.35

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018599)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442261
rosa_laevigata RLG00000006021
rosa_multiflora Rmu_sc0000124.1_g000058
rosa_roxburghii Rroxscaffold_5G00383320
rosa_rugosa Rorug04G0340100
rosa_samantha Rh4AG391700 Rh4AG393200 Rh4CG420400 Rh4DG398500 Rh4DG400200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 2 cut(s) 123, 757
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 2 cut(s) 103, 153
AfaI GTAC 2 cut(s) 144, 646
AfiI CCNNNNNNNGG 4 cut(s) 66, 67, 512, 695
AgsI TTSAA 6 cut(s) 82, 101, 152, 159, 181, 307
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 3 cut(s) 335, 465, 567
AluI AGCT 3 cut(s) 335, 465, 567
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 1 cut(s) 712
AlwNI CAGNNNCTG 1 cut(s) 338
Ama87I CYCGRG 2 cut(s) 224, 366
AoxI GGCC 2 cut(s) 7, 697
ApeKI GCWGC 3 cut(s) 125, 332, 422
ApoI RAATTY 2 cut(s) 103, 153
AspS9I GGNCC 2 cut(s) 43, 555
AsuC2I CCSGG 1 cut(s) 348
AsuII TTCGAA 1 cut(s) 403
AvaI CYCGRG 2 cut(s) 224, 366
AvaII GGWCC 2 cut(s) 43, 555
BalI TGGCCA 1 cut(s) 9
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 3 cut(s) 112, 344, 409
BccI CCATC 4 cut(s) 18, 60, 285, 493
BciT130I CCWGG 1 cut(s) 690
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 712
BfaI CTAG 1 cut(s) 760
BisI GCNGC 3 cut(s) 126, 333, 423
BlsI GCNGC 3 cut(s) 127, 334, 424
Bme1390I CCNGG 2 cut(s) 348, 690
Bme18I GGWCC 2 cut(s) 43, 555
BmeT110I CYCGRG 2 cut(s) 224, 366
BmgT120I GGNCC 2 cut(s) 43, 555
BmiI GGNNCC 3 cut(s) 27, 121, 504
BmrFI CCNGG 2 cut(s) 348, 690
BmsI GCATC 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 403
BpuMI CCSGG 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 266
BsaJI CCNNGG 4 cut(s) 109, 223, 469, 689
BsaWI WCCGGW 3 cut(s) 22, 28, 164
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 67, 512, 695
Bse1I ACTGG 1 cut(s) 704
Bse3DI GCAATG 1 cut(s) 442
Bse8I GATNNNNATC 1 cut(s) 266
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 4 cut(s) 109, 223, 469, 689
BseGI GGATG 2 cut(s) 55, 636
BseJI GATNNNNATC 1 cut(s) 266
BseLI CCNNNNNNNGG 4 cut(s) 66, 67, 512, 695
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 1 cut(s) 723
BseNI ACTGG 1 cut(s) 704
BseRI GAGGAG 4 cut(s) 129, 270, 273, 483
BseXI GCAGC 3 cut(s) 112, 344, 409
BshFI GGCC 2 cut(s) 9, 699
BshNI GGYRCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 467
BsiHKCI CYCGRG 2 cut(s) 224, 366
BsiSI CCGG 6 cut(s) 23, 29, 38, 129, 165, 347
BslFI GGGAC 1 cut(s) 694
BslI CCNNNNNNNGG 4 cut(s) 66, 67, 512, 695
BsmAI GTCTC 1 cut(s) 712
BsmFI GGGAC 1 cut(s) 694
BsnI GGCC 2 cut(s) 9, 699
BsoBI CYCGRG 2 cut(s) 224, 366
Bsp119I TTCGAA 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 3 cut(s) 73, 261, 298
Bsp19I CCATGG 1 cut(s) 469
BspACI CCGC 2 cut(s) 123, 757
BspANI GGCC 2 cut(s) 9, 699
BspCNI CTCAG 1 cut(s) 722
BspLI GGNNCC 3 cut(s) 27, 121, 504
BspT104I TTCGAA 1 cut(s) 403
BspT107I GGYRCC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 442
BsrI ACTGG 1 cut(s) 704
BssECI CCNNGG 4 cut(s) 109, 223, 469, 689
BssMI GATC 3 cut(s) 73, 261, 298
BssT1I CCWWGG 2 cut(s) 109, 469
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 4 cut(s) 393, 410, 432, 580
Bst6I CTCTTC 1 cut(s) 405
BstBI TTCGAA 1 cut(s) 403
BstC8I GCNNGC 2 cut(s) 7, 701
BstDEI CTNAG 1 cut(s) 709
BstDSI CCRYGG 1 cut(s) 469
BstF5I GGATG 2 cut(s) 55, 636
BstKTI GATC 3 cut(s) 76, 264, 301
BstMAI GTCTC 1 cut(s) 712
BstMBI GATC 3 cut(s) 73, 261, 298
BstMWI GCNNNNNNNGC 2 cut(s) 471, 700
BstNI CCWGG 1 cut(s) 690
BstSCI CCNGG 2 cut(s) 346, 688
BstV1I GCAGC 3 cut(s) 112, 344, 409
BsuRI GGCC 2 cut(s) 9, 699
BtgI CCRYGG 1 cut(s) 469
BtsCI GGATG 2 cut(s) 55, 636
BtsIMutI CAGTG 1 cut(s) 437
Cac8I GCNNGC 2 cut(s) 7, 701
CaiI CAGNNNCTG 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 43, 555
Csp6I GTAC 2 cut(s) 143, 645
CviAII CATG 1 cut(s) 470
CviQI GTAC 2 cut(s) 143, 645
DdeI CTNAG 1 cut(s) 709
DpnI GATC 3 cut(s) 75, 263, 300
DpnII GATC 3 cut(s) 73, 261, 298
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 109, 469
Eco24I GRGCYC 1 cut(s) 467
Eco47I GGWCC 2 cut(s) 43, 555
Eco53kI GAGCTC 1 cut(s) 465
Eco88I CYCGRG 2 cut(s) 224, 366
EcoICRI GAGCTC 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 2 cut(s) 109, 469
EcoT38I GRGCYC 1 cut(s) 467
ErhI CCWWGG 2 cut(s) 109, 469
FaeI CATG 1 cut(s) 473
FaqI GGGAC 1 cut(s) 694
FatI CATG 1 cut(s) 469
FauNDI CATATG 1 cut(s) 545
Fnu4HI GCNGC 3 cut(s) 126, 333, 423
FokI GGATG 2 cut(s) 42, 623
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 3 cut(s) 126, 333, 423
FspBI CTAG 1 cut(s) 760
GluI GCNGC 3 cut(s) 126, 333, 423
HaeIII GGCC 2 cut(s) 9, 699
HapII CCGG 6 cut(s) 23, 29, 38, 129, 165, 347
Hin1II CATG 1 cut(s) 473
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HpaI GTTAAC 1 cut(s) 396
HpaII CCGG 6 cut(s) 23, 29, 38, 129, 165, 347
Hpy166II GTNNAC 2 cut(s) 382, 396
Hpy188I TCNGA 2 cut(s) 498, 712
Hpy188III TCNNGA 3 cut(s) 338, 366, 629
Hpy8I GTNNAC 2 cut(s) 382, 396
Hpy99I CGWCG 2 cut(s) 66, 606
HpyAV CCTTC 1 cut(s) 505
HpyCH4III ACNGT 4 cut(s) 393, 410, 432, 580
HpyCH4V TGCA 5 cut(s) 259, 325, 425, 435, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 471, 700
HpyF3I CTNAG 1 cut(s) 709
Hsp92II CATG 1 cut(s) 473
KspAI GTTAAC 1 cut(s) 396
Kzo9I GATC 3 cut(s) 73, 261, 298
LmnI GCTCC 5 cut(s) 283, 340, 470, 502, 584
Lsp1109I GCAGC 3 cut(s) 112, 344, 409
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 760
MalI GATC 3 cut(s) 75, 263, 300
MboI GATC 3 cut(s) 73, 261, 298
MboII GAAGA 5 cut(s) 189, 329, 365, 392, 536
MhlI GDGCHC 1 cut(s) 467
MlsI TGGCCA 1 cut(s) 9
MluCI AATT 4 cut(s) 103, 153, 181, 550
MluNI TGGCCA 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 562
Mox20I TGGCCA 1 cut(s) 9
MscI TGGCCA 1 cut(s) 9
MseI TTAA 2 cut(s) 395, 575
Msp20I TGGCCA 1 cut(s) 9
MspA1I CMGCKG 2 cut(s) 125, 567
MspI CCGG 6 cut(s) 23, 29, 38, 129, 165, 347
MspR9I CCNGG 2 cut(s) 348, 690
MvaI CCWGG 1 cut(s) 690
MwoI GCNNNNNNNGC 2 cut(s) 471, 700
NciI CCSGG 1 cut(s) 348
NcoI CCATGG 1 cut(s) 469
NdeI CATATG 1 cut(s) 545
NdeII GATC 3 cut(s) 73, 261, 298
NlaIII CATG 1 cut(s) 473
NlaIV GGNNCC 3 cut(s) 27, 121, 504
NmeAIII GCCGAG 1 cut(s) 484
NspV TTCGAA 1 cut(s) 403
PaeR7I CTCGAG 1 cut(s) 366
PkrI GCNGC 3 cut(s) 127, 334, 424
Psp124BI GAGCTC 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 3 cut(s) 27, 121, 504
PspPI GGNCC 2 cut(s) 43, 555
PstNI CAGNNNCTG 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 567
RsaI GTAC 2 cut(s) 144, 646
RsaNI GTAC 2 cut(s) 143, 645
SacI GAGCTC 1 cut(s) 467
SaqAI TTAA 2 cut(s) 395, 575
SatI GCNGC 3 cut(s) 126, 333, 423
Sau3AI GATC 3 cut(s) 73, 261, 298
Sau96I GGNCC 2 cut(s) 43, 555
ScrFI CCNGG 2 cut(s) 348, 690
SduI GDGCHC 1 cut(s) 467
SetI ASST 8 cut(s) 45, 144, 150, 172, 337, 467, 569, 737
SfaNI GCATC 1 cut(s) 334
Sfr274I CTCGAG 1 cut(s) 366
SfuI TTCGAA 1 cut(s) 403
SinI GGWCC 2 cut(s) 43, 555
SlaI CTCGAG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 4 cut(s) 103, 153, 181, 550
SsiI CCGC 2 cut(s) 123, 757
SspI AATATT 2 cut(s) 194, 723
SspMI CTAG 1 cut(s) 760
SstI GAGCTC 1 cut(s) 467
StyD4I CCNGG 2 cut(s) 346, 688
StyI CCWWGG 2 cut(s) 109, 469
TaaI ACNGT 4 cut(s) 393, 410, 432, 580
TaqI TCGA 4 cut(s) 264, 367, 403, 740
TasI AATT 4 cut(s) 103, 153, 181, 550
Tru1I TTAA 2 cut(s) 395, 575
Tru9I TTAA 2 cut(s) 395, 575
TscAI CASTG 1 cut(s) 437
TseI GCWGC 3 cut(s) 125, 332, 422
TspDTI ATGAA 1 cut(s) 625
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 43, 555
XapI RAATTY 2 cut(s) 103, 153
XhoI CTCGAG 1 cut(s) 366
XspI CTAG 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.