Rh4CG420400

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0018599
Physical Location & Seq
Reverse (-)
66440586 .. 66441162
577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG420400.1

Sequence Viewer

Length: 336 bp
ATGATCAATGTCTATCCATACTATGCATATGCTACCGACCGAACCCACGTTCCCTTGGACTATGCTCTCTTTAATGCAACCGCTGTGGTTCATGATGGGGAATTGGCCTACAACAACCTTTTCGATGCTATGGTGGATCCATTCTACTGGACAATGGAGAAAAGGTACCGAAATGCGAAGATCGTGGTGTCTGAGACTGGCTGGACTCGCACTGGCACTAAACCATGCCGGTGCGAGGCCAGCCAGTCTCAGACACCACAATATTCACAACAACCTAGTCTTTTCGATGATTATAACAATCCGCTGGTGCTATCTGCATTTCTGAACTTGGGATGA

Protein Analysis

111

Amino Acids

12.76

Weight (kDa)

5.13

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 2 - 82 5e-18 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018599)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442261
rosa_laevigata RLG00000006021
rosa_multiflora Rmu_sc0000124.1_g000058
rosa_roxburghii Rroxscaffold_5G00383320
rosa_rugosa Rorug04G0340100
rosa_samantha Rh4AG391700 Rh4AG393200 Rh4CG420400 Rh4DG398500 Rh4DG400200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AciI CCGC 2 cut(s) 81, 302
AclWI GGATC 2 cut(s) 131, 144
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 235
AloI GAACNNNNNNTCC 2 cut(s) 34, 66
Alw26I GTCTC 2 cut(s) 188, 252
AlwI GGATC 2 cut(s) 131, 144
AoxI GGCC 2 cut(s) 105, 237
Asp718I GGTACC 1 cut(s) 165
BamHI GGATCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 165
BccI CCATC 1 cut(s) 89
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 188, 252
BfaI CTAG 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 138, 167
BmsI GCATC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 4 cut(s) 152, 202, 217, 244
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 183, 263
BseNI ACTGG 4 cut(s) 152, 202, 217, 244
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 2 cut(s) 107, 239
BshNI GGYRCC 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 2 cut(s) 188, 252
BsnI GGCC 2 cut(s) 107, 239
Bsp143I GATC 3 cut(s) 3, 136, 180
BspACI CCGC 2 cut(s) 81, 302
BspANI GGCC 2 cut(s) 107, 239
BspCNI CTCAG 2 cut(s) 184, 262
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 138, 167
BspPI GGATC 2 cut(s) 131, 144
BspT107I GGYRCC 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 4 cut(s) 152, 202, 217, 244
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 3 cut(s) 3, 136, 180
BssT1I CCWWGG 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 192, 249
BstKTI GATC 3 cut(s) 6, 139, 183
BstMAI GTCTC 2 cut(s) 188, 252
BstMBI GATC 3 cut(s) 3, 136, 180
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 207, 240
BstX2I RGATCY 1 cut(s) 136
BstXI CCANNNNNNTGG 1 cut(s) 147
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 2 cut(s) 107, 239
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 241
CciI TCATGA 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 228
Csp6I GTAC 1 cut(s) 166
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 2 cut(s) 92, 225
CviJI RGCY 4 cut(s) 107, 201, 239, 243
CviKI_1 RGCY 4 cut(s) 107, 201, 239, 243
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 192, 249
DpnI GATC 3 cut(s) 5, 138, 182
DpnII GATC 3 cut(s) 3, 136, 180
Eco130I CCWWGG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 95, 228
FaiI YATR 9 cut(s) 19, 24, 28, 30, 63, 93, 131, 226, 294
FatI CATG 2 cut(s) 91, 224
FauNDI CATATG 1 cut(s) 28
FbaI TGATCA 1 cut(s) 3
FspBI CTAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 107, 239
HapII CCGG 1 cut(s) 229
Hin1II CATG 2 cut(s) 95, 228
HinfI GANTC 1 cut(s) 205
HpaII CCGG 1 cut(s) 229
Hpy188I TCNGA 3 cut(s) 193, 252, 324
Hpy188III TCNNGA 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 3 cut(s) 26, 77, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 240
HpyF3I CTNAG 2 cut(s) 192, 249
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 2 cut(s) 95, 228
KpnI GGTACC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 136, 180
LpnPI CCDG 8 cut(s) 133, 183, 187, 198, 242, 253, 257, 290
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 48
MalI GATC 3 cut(s) 5, 138, 182
MboI GATC 3 cut(s) 3, 136, 180
MboII GAAGA 1 cut(s) 190
MflI RGATCY 1 cut(s) 136
MluCI AATT 1 cut(s) 101
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 1 cut(s) 229
Mph1103I ATGCAT 1 cut(s) 28
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 229
MspA1I CMGCKG 2 cut(s) 83, 304
MspI CCGG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 207, 240
NdeI CATATG 1 cut(s) 28
NdeII GATC 3 cut(s) 3, 136, 180
NlaIII CATG 2 cut(s) 95, 228
NlaIV GGNNCC 2 cut(s) 138, 167
NsiI ATGCAT 1 cut(s) 28
PagI TCATGA 1 cut(s) 91
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PsiI TTATAA 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 138, 167
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 229
SaqAI TTAA 1 cut(s) 72
Sau3AI GATC 3 cut(s) 3, 136, 180
SchI GAGTC 1 cut(s) 199
SetI ASST 4 cut(s) 51, 120, 167, 277
SfaNI GCATC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 229
Sse9I AATT 1 cut(s) 101
SsiI CCGC 2 cut(s) 81, 302
SspI AATATT 1 cut(s) 263
SspMI CTAG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 54
TaiI ACGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 123, 285
TaqII GACCGA 1 cut(s) 54
TasI AATT 1 cut(s) 101
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 217
XspI CTAG 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.