Rh4DG400200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018599
Physical Location & Seq
Reverse (-)
61597335 .. 61599756
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG400200.1

Sequence Viewer

Length: 441 bp
ATGGCTGGCCATCATCAAGTTCCAGTTCCGGTTCTGCTGGAGGTCCAACTTCATTTGGACGCGAACAATCCTCGACCCCCCACTCCGCGACACCGTGTTGCTCCTCCTGGAATCGACGTCCAAAATGCTCCTCCACGAGGACCCCGACAATTTACACGAATATTCTTCTCGTTTGGGGGTTTCTGGCTTCCTCGGGTTTCTTTATATTTTCTTGTGATTTTGTTGCAGATCGAAATCCAAAACGCTCCTCCTCGAAGATGGAATGAAAATGCTCGAGGAGGCCCCAGTGTTGCTTCTACCAACGCTCCAATTCAAGCCTCTAAGGTCAAAAACGATGAAGAAGTTCCCATGGCATATGTGCTGATGTACAACCATTTGCTTTTTGCTCCTATTGAAGAGTTCTGTTTTGTGCCTTTGGTCTTGGGGCTTCTAGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.36

Weight (kDa)

9.03

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018599)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442261
rosa_laevigata RLG00000006021
rosa_multiflora Rmu_sc0000124.1_g000058
rosa_roxburghii Rroxscaffold_5G00383320
rosa_rugosa Rorug04G0340100
rosa_samantha Rh4AG391700 Rh4AG393200 Rh4CG420400 Rh4DG398500 Rh4DG400200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccII CGCG 2 cut(s) 62, 88
AciI CCGC 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 314, 395
AjnI CCWGG 1 cut(s) 106
Ama87I CYCGRG 2 cut(s) 192, 273
AoxI GGCC 2 cut(s) 7, 280
Asp700I GAANNNNTTC 1 cut(s) 342
AspS9I GGNCC 3 cut(s) 43, 140, 281
AvaI CYCGRG 2 cut(s) 192, 273
AvaII GGWCC 2 cut(s) 43, 140
BalI TGGCCA 1 cut(s) 9
BauI CACGAG 1 cut(s) 135
BccI CCATC 2 cut(s) 18, 252
BciT130I CCWGG 1 cut(s) 108
BfaI CTAG 1 cut(s) 431
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 2 cut(s) 43, 140
BmeT110I CYCGRG 2 cut(s) 192, 273
BmgT120I GGNCC 3 cut(s) 43, 140, 281
BmiI GGNNCC 2 cut(s) 142, 283
BmrFI CCNGG 1 cut(s) 108
BmrI ACTGGG 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 191, 348
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 23, 285
Bse8I GATNNNNATC 1 cut(s) 233
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 191, 348
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 2 cut(s) 23, 285
BseRI GAGGAG 5 cut(s) 93, 120, 237, 240, 291
Bsh1236I CGCG 2 cut(s) 62, 88
BshFI GGCC 2 cut(s) 9, 282
BsiHKCI CYCGRG 2 cut(s) 192, 273
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 137
BsnI GGCC 2 cut(s) 9, 282
BsoBI CYCGRG 2 cut(s) 192, 273
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 1 cut(s) 228
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 1 cut(s) 86
BspANI GGCC 2 cut(s) 9, 282
BspFNI CGCG 2 cut(s) 62, 88
BspLI GGNNCC 2 cut(s) 142, 283
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 2 cut(s) 23, 285
BssECI CCNNGG 2 cut(s) 191, 348
BssMI GATC 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 117
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 117
BstAUI TGTACA 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 348
BstENI CCTNNNNNAGG 1 cut(s) 135
BstFNI CGCG 2 cut(s) 62, 88
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstUI CGCG 2 cut(s) 62, 88
BsuRI GGCC 2 cut(s) 9, 282
BtgI CCRYGG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 3 cut(s) 43, 140, 281
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 367
CviAII CATG 1 cut(s) 349
CviJI RGCY 6 cut(s) 5, 9, 187, 282, 317, 427
CviKI_1 RGCY 6 cut(s) 5, 9, 187, 282, 317, 427
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 348
Eco47I GGWCC 2 cut(s) 43, 140
Eco88I CYCGRG 2 cut(s) 192, 273
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoO109I RGGNCCY 2 cut(s) 140, 281
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 352
FaiI YATR 4 cut(s) 205, 350, 355, 357
FatI CATG 1 cut(s) 348
FauNDI CATATG 1 cut(s) 355
FspBI CTAG 1 cut(s) 431
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 2 cut(s) 9, 282
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 1 cut(s) 352
HinfI GANTC 1 cut(s) 111
HpaII CCGG 1 cut(s) 29
Hpy99I CGWCG 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 226
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 352
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 5 cut(s) 106, 133, 250, 310, 391
LpnPI CCDG 7 cut(s) 23, 36, 42, 93, 120, 169, 298
MaeI CTAG 1 cut(s) 431
MaeII ACGT 1 cut(s) 117
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 4 cut(s) 157, 267, 350, 407
MlsI TGGCCA 1 cut(s) 9
MluCI AATT 2 cut(s) 149, 309
MluNI TGGCCA 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 70
Mox20I TGGCCA 1 cut(s) 9
MroXI GAANNNNTTC 1 cut(s) 342
MscI TGGCCA 1 cut(s) 9
Msp20I TGGCCA 1 cut(s) 9
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 2 cut(s) 62, 88
NcoI CCATGG 1 cut(s) 348
NdeI CATATG 1 cut(s) 355
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 2 cut(s) 142, 283
PaeR7I CTCGAG 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 111
PfoI TCCNGGA 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 142, 283
PspPI GGNCC 3 cut(s) 43, 140, 281
PspPPI RGGWCCY 1 cut(s) 140
PspXI VCTCGAGB 1 cut(s) 273
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 3 cut(s) 43, 140, 281
ScrFI CCNGG 1 cut(s) 108
SetI ASST 3 cut(s) 45, 120, 327
Sfr274I CTCGAG 1 cut(s) 273
SinI GGWCC 2 cut(s) 43, 140
SlaI CTCGAG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 2 cut(s) 149, 309
SsiI CCGC 1 cut(s) 86
SspI AATATT 1 cut(s) 162
SspMI CTAG 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 120
TaqI TCGA 5 cut(s) 73, 114, 231, 253, 274
TasI AATT 2 cut(s) 149, 309
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 1 cut(s) 111
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 41, 279, 351
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 2 cut(s) 43, 140
XagI CCTNNNNNAGG 1 cut(s) 135
XhoI CTCGAG 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 431
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.