Rorug04G0340100

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0018599
Physical Location & Seq
Reverse (-)
51301784 .. 51302371
588 bp
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UTR
Exon/CDS
Intron
Rorug04G0340100.1

Sequence Viewer

Length: 309 bp
ATGGCTCAGCGGAAAGATTGTAAGATGAGGCACCCAGCTATTGTGCATAGATGTCCTGATGTTCCGTACACTGAGAAGCAGATCATAAATATTTTCAAGAGCTTTGACCTGAATGGAGACGGCAAGCTGTCCTGGGATGAGGTGAAGGCTGCGTTTGCTAAACTTGGGGCAAACTTGCCCTACTACAGAGCTTGGCGAGGACGAATCTGTGCCGATGCCGACAAGGATGGCTTCATCTCTCTCGAGACCGAGCTCAATGAACTTGTCACCTATACCCTAAAACAAAGGTATAAACCGCAAAGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

102

Amino Acids

11.81

Weight (kDa)

9.03

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 18 - 52 3.3e-06 EF-hand domain pair
EF-hand_1 PF00036 28 - 55 4.5e-07 EF hand domain
EF-hand_6 PF13405 28 - 56 3.9e-07 EF-hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018599)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442261
rosa_laevigata RLG00000006021
rosa_multiflora Rmu_sc0000124.1_g000058
rosa_roxburghii Rroxscaffold_5G00383320
rosa_rugosa Rorug04G0340100
rosa_samantha Rh4AG391700 Rh4AG393200 Rh4CG420400 Rh4DG398500 Rh4DG400200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 30
AciI CCGC 2 cut(s) 10, 296
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 5 cut(s) 38, 102, 127, 191, 253
AluI AGCT 5 cut(s) 38, 102, 127, 191, 253
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 111, 239
Ama87I CYCGRG 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 154, 259
AvaI CYCGRG 1 cut(s) 242
BanI GGYRCC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 111, 239
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 1 cut(s) 150
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 205
Bpu1102I GCTNAGC 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 142, 232
BseMII CTCAG 2 cut(s) 20, 63
BseXI GCAGC 1 cut(s) 136
BseYI CCCAGC 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 242
BsmAI GTCTC 2 cut(s) 111, 239
BsmBI CGTCTC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 81
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 2 cut(s) 10, 296
BspCNI CTCAG 2 cut(s) 19, 64
BspLI GGNNCC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 6, 72
BstF5I GGATG 2 cut(s) 142, 232
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 2 cut(s) 111, 239
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 142, 232
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 67
CviJI RGCY 8 cut(s) 5, 38, 102, 127, 149, 191, 231, 253
CviKI_1 RGCY 8 cut(s) 5, 38, 102, 127, 149, 191, 231, 253
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 6, 72
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 111
FaiI YATR 4 cut(s) 48, 86, 273, 291
FalI AAGNNNNNCTT 2 cut(s) 215, 247
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 2 cut(s) 149, 239
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
GsaI CCCAGC 1 cut(s) 38
HinfI GANTC 1 cut(s) 204
HphI GGTGA 2 cut(s) 154, 259
Hpy166II GTNNAC 1 cut(s) 69
Hpy188III TCNNGA 4 cut(s) 56, 97, 242, 244
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 6, 72
Kzo9I GATC 1 cut(s) 81
LpnPI CCDG 5 cut(s) 48, 69, 118, 122, 145
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 1 cut(s) 304
MnlI CCTC 3 cut(s) 21, 133, 191
MseI TTAA 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 81
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 265
PaeR7I CTCGAG 1 cut(s) 242
PfeI GAWTC 1 cut(s) 204
PkrI GCNGC 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 32
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 307
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 255
SetI ASST 9 cut(s) 40, 104, 111, 129, 144, 193, 255, 272, 290
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 184
Sfr274I CTCGAG 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 304
SsiI CCGC 2 cut(s) 10, 296
SspI AATATT 1 cut(s) 91
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 131
TaqI TCGA 1 cut(s) 243
TaqII GACCGA 1 cut(s) 263
TasI AATT 1 cut(s) 304
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 307
Tru9I TTAA 1 cut(s) 307
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 223, 273
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 76
XhoI CTCGAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.