RLG00000006222

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019055
Physical Location & Seq
Forward (+)
5337059 .. 5337474
416 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006222

Sequence Viewer

Length: 393 bp
ATGAGAGGCACAAAGCCGAGGAGACCGAGCCAGGCGTTGTTTCTGGTGCGTCGTCCAAGTGTGGCTTCCAGCAACTACGACAACACCGTTGCAATCGTCGGTCCGAGTTCGTCTCTGACAATCGCCGATCTGAGGGTGTTCGCCTTCTCCGAGCTCAAATTGGAGAATCGCCGGTTCAATCGGGCCTTGCTGATCCGAGGCTTCAAAGCGTCATCCTCTCAGATTGTTGTTGTTTGCTCCGGCGATGTCTTGTTGAGCGTCATCGTCATCGTCTCGGATTGCTTACACACGTTTGAGCGGCGGAATAGTCATCAAGTCCCAGGCAGCCGGGGATGGAGAAACGGTGTTATTCTCTCTACTGCTCCTAATCATCAGCTTATGTTTGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.44

Weight (kDa)

11.27

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019055)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006222 RLG00000006795 RLG00000010090 RLG00000012725 RLG00000024751
rosa_multiflora Rmu_sc0000929.1_g000040 Rmu_sc0001762.1_g000043
rosa_roxburghii Rroxscaffold_5G00374360
rosa_samantha Rh3DG370200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 298
AciI CCGC 2 cut(s) 298, 301
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 387
AfiI CCNNNNNNNGG 1 cut(s) 132
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 3 cut(s) 178, 205, 386
AjnI CCWGG 2 cut(s) 30, 319
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AluBI AGCT 2 cut(s) 154, 376
AluI AGCT 2 cut(s) 154, 376
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 3 cut(s) 16, 117, 277
AlwI GGATC 1 cut(s) 187
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 324
ApoI RAATTY 1 cut(s) 387
AspS9I GGNCC 2 cut(s) 101, 183
AsuC2I CCSGG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 336
BccI CCATC 1 cut(s) 327
BciT130I CCWGG 2 cut(s) 32, 321
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 3 cut(s) 16, 117, 277
BisI GCNGC 2 cut(s) 299, 325
BlsI GCNGC 2 cut(s) 300, 326
Bme1390I CCNGG 3 cut(s) 32, 321, 329
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 101, 183
BmrFI CCNGG 3 cut(s) 32, 321, 329
BplI GAGNNNNNCTC 2 cut(s) 97, 129
BpuMI CCSGG 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 4 cut(s) 17, 196, 319, 328
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse118I RCCGGY 1 cut(s) 171
BseBI CCWGG 2 cut(s) 32, 321
BseDI CCNNGG 4 cut(s) 17, 196, 319, 328
BseGI GGATG 2 cut(s) 212, 338
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 122, 233
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 336
BshFI GGCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 3 cut(s) 172, 240, 328
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 3 cut(s) 16, 117, 277
BsmBI CGTCTC 2 cut(s) 117, 277
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 127, 192
BspACI CCGC 2 cut(s) 298, 301
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 123, 232
BspPI GGATC 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 16
BsrBI CCGCTC 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 171
BssECI CCNNGG 4 cut(s) 17, 196, 319, 328
BssMI GATC 2 cut(s) 127, 192
Bst2UI CCWGG 2 cut(s) 32, 321
Bst4CI ACNGT 2 cut(s) 88, 344
BstDEI CTNAG 2 cut(s) 131, 219
BstF5I GGATG 2 cut(s) 212, 338
BstKTI GATC 2 cut(s) 130, 195
BstMAI GTCTC 3 cut(s) 16, 117, 277
BstMBI GATC 2 cut(s) 127, 192
BstNI CCWGG 2 cut(s) 32, 321
BstSCI CCNGG 3 cut(s) 30, 319, 327
BstV1I GCAGC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 212, 338
Cfr10I RCCGGY 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 101, 183
CpoI CGGWCCG 1 cut(s) 101
CseI GACGC 3 cut(s) 38, 198, 247
CspI CGGWCCG 1 cut(s) 101
CviJI RGCY 8 cut(s) 16, 30, 65, 154, 185, 201, 327, 376
CviKI_1 RGCY 8 cut(s) 16, 30, 65, 154, 185, 201, 327, 376
DdeI CTNAG 2 cut(s) 131, 219
DpnI GATC 2 cut(s) 129, 194
DpnII GATC 2 cut(s) 127, 192
EciI GGCGGA 1 cut(s) 316
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 30, 319
EcoT38I GRGCYC 1 cut(s) 156
Esp3I CGTCTC 2 cut(s) 117, 277
FaiI YATR 1 cut(s) 380
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 1 cut(s) 302
Fnu4HI GCNGC 2 cut(s) 299, 325
FokI GGATG 2 cut(s) 199, 345
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 299, 325
GluI GCNGC 2 cut(s) 299, 325
HaeIII GGCC 1 cut(s) 185
HapII CCGG 3 cut(s) 172, 240, 328
HgaI GACGC 3 cut(s) 38, 198, 247
HinfI GANTC 1 cut(s) 166
HpaII CCGG 3 cut(s) 172, 240, 328
Hpy188I TCNGA 7 cut(s) 105, 117, 132, 151, 197, 222, 277
Hpy99I CGWCG 2 cut(s) 54, 101
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 2 cut(s) 88, 344
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 131, 219
HpySE526I ACGT 1 cut(s) 290
Kzo9I GATC 2 cut(s) 127, 192
LmnI GCTCC 2 cut(s) 242, 367
LpnPI CCDG 9 cut(s) 17, 29, 44, 82, 185, 253, 306, 333, 341
Lsp1109I GCAGC 1 cut(s) 336
MaeII ACGT 1 cut(s) 290
MalI GATC 2 cut(s) 129, 194
MbiI CCGCTC 1 cut(s) 298
MboI GATC 2 cut(s) 127, 192
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 158, 387
MnlI CCTC 4 cut(s) 12, 126, 191, 226
MspI CCGG 3 cut(s) 172, 240, 328
MspR9I CCNGG 3 cut(s) 32, 321, 329
MvaI CCWGG 2 cut(s) 32, 321
NciI CCSGG 1 cut(s) 329
NdeII GATC 2 cut(s) 127, 192
NmeAIII GCCGAG 1 cut(s) 42
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 147
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 2 cut(s) 300, 326
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 30, 319
PspGI CCWGG 2 cut(s) 30, 319
PspPI GGNCC 2 cut(s) 101, 183
Rsr2I CGGWCCG 1 cut(s) 101
RsrII CGGWCCG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 156
SatI GCNGC 2 cut(s) 299, 325
Sau3AI GATC 2 cut(s) 127, 192
Sau96I GGNCC 2 cut(s) 101, 183
ScrFI CCNGG 3 cut(s) 32, 321, 329
SduI GDGCHC 1 cut(s) 156
SetI ASST 3 cut(s) 156, 293, 378
SinI GGWCC 1 cut(s) 101
Sse9I AATT 2 cut(s) 158, 387
SsiI CCGC 2 cut(s) 298, 301
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 30, 319, 327
TaaI ACNGT 2 cut(s) 88, 344
TaiI ACGT 1 cut(s) 293
TaqII GACCGA 2 cut(s) 40, 89
TasI AATT 2 cut(s) 158, 387
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 1 cut(s) 166
TseI GCWGC 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.