Rmu_sc0001762.1_g000043

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001762.1
OG0019055
Physical Location & Seq
Reverse (-)
155447 .. 157676
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001762.1_g000043.1.cds

Sequence Viewer

Length: 759 bp
ctgccacctggtgttgtggtggcgacacgagtggactcacgacacgcttttgaaatcggaactagacgacagccgaccgtcgctaccaccccaaatccaacttgggtggtttgccctaaacagtcagcgtcgccatttacaggtgtcatttctgggaccatgacacccgggctaggagtattttttcaacgaagctcggtggcttttgcaagattgagtctatctgggatcgtcgggattggggtttcaagatgggaggtcggcgtcaggtttatttcgaactctagtggcggcgtgaagagggaagtcgacggcttgcggtggatccgcatccgaggggatctgggttcgtgcttcggtacgccgggtctctctcggactcttggagcgtcgtggtggtggtcaaacgctggggtgtgcttcactggtggtggcggttgtggcaggggtggcggtagcatttgcagctgtgcagcgtctgccctagcaaaggagatcaccttctccccccctccccgtacatacagatcaccagtcccagcgatgaagtgtttccatttcaccatcggcaagagacgcgacgatgacgagaccgagctaggcattgtttctcacgcgccatccaaggtctcgtgggcccggtccctcagcgtggcctccagcagctacgacaacaccaactacaatcgacagtccgaatttgactccaactcccacgacatgtcggactcggcggccttctacaccttgctgagttag

Protein Analysis

252

Amino Acids

26.87

Weight (kDa)

9.53

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019055)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006222 RLG00000006795 RLG00000010090 RLG00000012725 RLG00000024751
rosa_multiflora Rmu_sc0000929.1_g000040 Rmu_sc0001762.1_g000043
rosa_roxburghii Rroxscaffold_5G00374360
rosa_samantha Rh3DG370200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 309
AccII CGCG 2 cut(s) 579, 617
AciI CCGC 6 cut(s) 291, 319, 328, 435, 453, 734
AclWI GGATC 4 cut(s) 236, 319, 332, 348
AcsI RAATTY 1 cut(s) 698
AcyI GRCGYC 1 cut(s) 264
AdeI CACNNNGTG 1 cut(s) 11
AfaI GTAC 2 cut(s) 361, 520
AfiI CCNNNNNNNGG 4 cut(s) 140, 173, 490, 652
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 3 cut(s) 53, 188, 249
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 4 cut(s) 195, 468, 598, 666
AluI AGCT 4 cut(s) 195, 468, 598, 666
Alw26I GTCTC 4 cut(s) 374, 568, 584, 634
AlwI GGATC 4 cut(s) 236, 319, 332, 348
AlwNI CAGNNNCTG 1 cut(s) 479
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 3 cut(s) 636, 654, 735
ApaI GGGCCC 1 cut(s) 640
ApeKI GCWGC 3 cut(s) 465, 473, 663
ApoI RAATTY 1 cut(s) 698
Asp700I GAANNNNTTC 1 cut(s) 551
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 4 cut(s) 156, 636, 637, 642
AsuC2I CCSGG 4 cut(s) 168, 169, 366, 640
AsuHPI GGTGA 3 cut(s) 490, 522, 553
AsuII TTCGAA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 156, 642
BaeGI GKGCMC 1 cut(s) 640
BamHI GGATCC 1 cut(s) 324
BanII GRGCYC 1 cut(s) 640
BauI CACGAG 2 cut(s) 27, 631
BbvCI CCTCAGC 1 cut(s) 647
BbvI GCAGC 3 cut(s) 477, 485, 675
BccI CCATC 3 cut(s) 246, 572, 628
BceAI ACGGC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 9
BcnI CCSGG 4 cut(s) 168, 169, 366, 640
BcoDI GTCTC 4 cut(s) 374, 568, 584, 634
BfaI CTAG 5 cut(s) 63, 173, 285, 485, 599
BisI GCNGC 5 cut(s) 292, 466, 474, 664, 735
BlsI GCNGC 5 cut(s) 293, 467, 475, 665, 736
Bme1390I CCNGG 5 cut(s) 9, 168, 169, 366, 640
Bme18I GGWCC 2 cut(s) 156, 642
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 4 cut(s) 156, 636, 637, 642
BmiI GGNNCC 4 cut(s) 157, 326, 638, 644
BmrFI CCNGG 5 cut(s) 9, 168, 169, 366, 640
BmsI GCATC 1 cut(s) 339
BpmI CTGGAG 1 cut(s) 643
Bpu10I CCTNAGC 1 cut(s) 647
Bpu14I TTCGAA 1 cut(s) 278
BpuMI CCSGG 4 cut(s) 168, 169, 366, 640
BsaBI GATNNNNATC 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 3 cut(s) 374, 584, 634
BsaJI CCNNGG 3 cut(s) 167, 334, 624
BsaXI ACNNNNNCTCC 2 cut(s) 695, 725
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 173, 490, 652
Bse1I ACTGG 2 cut(s) 430, 533
Bse8I GATNNNNATC 1 cut(s) 329
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 3 cut(s) 167, 334, 624
BseGI GGATG 2 cut(s) 330, 620
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 4 cut(s) 140, 173, 490, 652
BseMII CTCAG 2 cut(s) 661, 743
BseNI ACTGG 2 cut(s) 430, 533
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 3 cut(s) 477, 485, 675
BseYI CCCAGC 2 cut(s) 410, 538
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 2 cut(s) 579, 617
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 3 cut(s) 638, 656, 737
BsiEI CGRYCG 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 3 cut(s) 168, 365, 640
BslFI GGGAC 3 cut(s) 169, 521, 628
BslI CCNNNNNNNGG 4 cut(s) 140, 173, 490, 652
BsmAI GTCTC 4 cut(s) 374, 568, 584, 634
BsmBI CGTCTC 1 cut(s) 568
BsmFI GGGAC 3 cut(s) 169, 521, 628
BsnI GGCC 3 cut(s) 638, 656, 737
Bso31I GGTCTC 3 cut(s) 374, 584, 634
BsoBI CYCGRG 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 278
Bsp120I GGGCCC 1 cut(s) 636
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 5 cut(s) 228, 324, 340, 495, 527
BspACI CCGC 6 cut(s) 291, 319, 328, 435, 453, 734
BspANI GGCC 3 cut(s) 638, 656, 737
BspCNI CTCAG 2 cut(s) 660, 744
BspFNI CGCG 2 cut(s) 579, 617
BspLI GGNNCC 4 cut(s) 157, 326, 638, 644
BspPI GGATC 4 cut(s) 236, 319, 332, 348
BspT104I TTCGAA 1 cut(s) 278
BspTNI GGTCTC 3 cut(s) 374, 584, 634
BsrI ACTGG 2 cut(s) 430, 533
BssECI CCNNGG 3 cut(s) 167, 334, 624
BssMI GATC 5 cut(s) 228, 324, 340, 495, 527
BssNI GRCGYC 1 cut(s) 264
BssSI CACGAG 2 cut(s) 27, 631
BssT1I CCWWGG 1 cut(s) 624
Bst2BI CACGAG 2 cut(s) 27, 631
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 3 cut(s) 79, 123, 693
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 647, 752
BstENI CCTNNNNNAGG 1 cut(s) 488
BstF5I GGATG 2 cut(s) 330, 620
BstFNI CGCG 2 cut(s) 579, 617
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 5 cut(s) 231, 327, 343, 498, 530
BstMAI GTCTC 4 cut(s) 374, 568, 584, 634
BstMBI GATC 5 cut(s) 228, 324, 340, 495, 527
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 5 cut(s) 441, 450, 465, 479, 576
BstNI CCWGG 1 cut(s) 9
BstNSI RCATGY 1 cut(s) 724
BstSCI CCNGG 5 cut(s) 7, 166, 167, 364, 638
BstSLI GKGCMC 1 cut(s) 640
BstUI CGCG 2 cut(s) 579, 617
BstV1I GCAGC 3 cut(s) 477, 485, 675
BstX2I RGATCY 2 cut(s) 324, 340
BstYI RGATCY 2 cut(s) 324, 340
BsuRI GGCC 3 cut(s) 638, 656, 737
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 2 cut(s) 330, 620
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 317
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 1 cut(s) 619
Cfr13I GGNCC 4 cut(s) 156, 636, 637, 642
Cfr9I CCCGGG 1 cut(s) 167
CseI GACGC 5 cut(s) 117, 253, 378, 465, 585
CsiI ACCWGGT 1 cut(s) 7
Csp6I GTAC 2 cut(s) 360, 519
CspCI CAANNNNNGTGG 2 cut(s) 87, 122
CviAII CATG 2 cut(s) 160, 721
CviQI GTAC 2 cut(s) 360, 519
DdeI CTNAG 2 cut(s) 647, 752
DpnI GATC 5 cut(s) 230, 326, 342, 497, 529
DpnII GATC 5 cut(s) 228, 324, 340, 495, 527
DraIII CACNNNGTG 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 624
Eco24I GRGCYC 1 cut(s) 640
Eco31I GGTCTC 3 cut(s) 374, 584, 634
Eco47I GGWCC 2 cut(s) 156, 642
Eco88I CYCGRG 1 cut(s) 167
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 624
EcoT38I GRGCYC 1 cut(s) 640
ErhI CCWWGG 1 cut(s) 624
Esp3I CGTCTC 1 cut(s) 568
FaeI CATG 2 cut(s) 163, 724
FaiI YATR 3 cut(s) 161, 523, 722
FaqI GGGAC 3 cut(s) 169, 521, 628
FatI CATG 2 cut(s) 159, 720
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 5 cut(s) 292, 466, 474, 664, 735
FokI GGATG 2 cut(s) 317, 607
FriOI GRGCYC 1 cut(s) 640
Fsp4HI GCNGC 5 cut(s) 292, 466, 474, 664, 735
FspBI CTAG 5 cut(s) 63, 173, 285, 485, 599
GlaI GCGC 1 cut(s) 618
GluI GCNGC 5 cut(s) 292, 466, 474, 664, 735
GsaI CCCAGC 2 cut(s) 414, 542
GsuI CTGGAG 1 cut(s) 643
HaeIII GGCC 3 cut(s) 638, 656, 737
HapII CCGG 3 cut(s) 168, 365, 640
HgaI GACGC 5 cut(s) 117, 253, 378, 465, 585
HhaI GCGC 1 cut(s) 619
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 2 cut(s) 163, 724
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 5 cut(s) 35, 217, 379, 704, 728
HpaII CCGG 3 cut(s) 168, 365, 640
HphI GGTGA 3 cut(s) 490, 522, 553
Hpy166II GTNNAC 2 cut(s) 34, 310
Hpy188I TCNGA 5 cut(s) 59, 335, 378, 697, 727
Hpy188III TCNNGA 3 cut(s) 39, 235, 249
Hpy8I GTNNAC 2 cut(s) 34, 310
Hpy99I CGWCG 6 cut(s) 83, 133, 236, 314, 394, 584
HpyAV CCTTC 2 cut(s) 511, 748
HpyCH4III ACNGT 3 cut(s) 79, 123, 693
HpyCH4V TGCA 3 cut(s) 209, 465, 473
HpyF10VI GCNNNNNNNGC 5 cut(s) 441, 450, 465, 479, 576
HpyF3I CTNAG 2 cut(s) 647, 752
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 2 cut(s) 163, 724
HspAI GCGC 1 cut(s) 617
Kzo9I GATC 5 cut(s) 228, 324, 340, 495, 527
LmnI GCTCC 1 cut(s) 386
Lsp1109I GCAGC 3 cut(s) 477, 485, 675
LweI GCATC 1 cut(s) 339
MabI ACCWGGT 1 cut(s) 7
MaeI CTAG 5 cut(s) 63, 173, 285, 485, 599
MalI GATC 5 cut(s) 230, 326, 342, 497, 529
MboI GATC 5 cut(s) 228, 324, 340, 495, 527
MboII GAAGA 1 cut(s) 310
MflI RGATCY 2 cut(s) 324, 340
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 1 cut(s) 698
MlyI GAGTC 5 cut(s) 29, 226, 373, 698, 722
MmeI TCCRAC 3 cut(s) 122, 705, 732
MnlI CCTC 6 cut(s) 250, 294, 329, 522, 656, 667
MroXI GAANNNNTTC 1 cut(s) 551
MspA1I CMGCKG 1 cut(s) 468
MspI CCGG 3 cut(s) 168, 365, 640
MspR9I CCNGG 5 cut(s) 9, 168, 169, 366, 640
MvaI CCWGG 1 cut(s) 9
MvnI CGCG 2 cut(s) 579, 617
MwoI GCNNNNNNNGC 5 cut(s) 441, 450, 465, 479, 576
NciI CCSGG 4 cut(s) 168, 169, 366, 640
NdeII GATC 5 cut(s) 228, 324, 340, 495, 527
NlaIII CATG 2 cut(s) 163, 724
NlaIV GGNNCC 4 cut(s) 157, 326, 638, 644
NmeAIII GCCGAG 1 cut(s) 710
NspI RCATGY 1 cut(s) 724
NspV TTCGAA 1 cut(s) 278
PciI ACATGT 1 cut(s) 720
PdmI GAANNNNTTC 1 cut(s) 551
PkrI GCNGC 5 cut(s) 293, 467, 475, 665, 736
PleI GAGTC 5 cut(s) 29, 225, 373, 698, 722
PpsI GAGTC 5 cut(s) 29, 225, 373, 698, 722
PscI ACATGT 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 7
PspFI CCCAGC 2 cut(s) 410, 538
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 4 cut(s) 157, 326, 638, 644
PspOMI GGGCCC 1 cut(s) 636
PspPI GGNCC 4 cut(s) 156, 636, 637, 642
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 2 cut(s) 324, 340
PvuII CAGCTG 1 cut(s) 468
RsaI GTAC 2 cut(s) 361, 520
RsaNI GTAC 2 cut(s) 360, 519
SalI GTCGAC 1 cut(s) 308
SatI GCNGC 5 cut(s) 292, 466, 474, 664, 735
Sau3AI GATC 5 cut(s) 228, 324, 340, 495, 527
Sau96I GGNCC 4 cut(s) 156, 636, 637, 642
SchI GAGTC 5 cut(s) 29, 226, 373, 698, 722
ScrFI CCNGG 5 cut(s) 9, 168, 169, 366, 640
SduI GDGCHC 1 cut(s) 640
SexAI ACCWGGT 1 cut(s) 7
SfaNI GCATC 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 278
SinI GGWCC 2 cut(s) 156, 642
SmaI CCCGGG 1 cut(s) 169
Sse9I AATT 1 cut(s) 698
SsiI CCGC 6 cut(s) 291, 319, 328, 435, 453, 734
SspMI CTAG 5 cut(s) 63, 173, 285, 485, 599
StyD4I CCNGG 5 cut(s) 7, 166, 167, 364, 638
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 3 cut(s) 79, 123, 693
TaqI TCGA 3 cut(s) 278, 309, 688
TaqII GACCGA 1 cut(s) 608
TasI AATT 1 cut(s) 698
TauI GCSGC 2 cut(s) 294, 737
TscAI CASTG 1 cut(s) 430
TseI GCWGC 3 cut(s) 465, 473, 663
TspDTI ATGAA 1 cut(s) 560
TspMI CCCGGG 1 cut(s) 167
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 156, 642
XagI CCTNNNNNAGG 1 cut(s) 488
XapI RAATTY 1 cut(s) 698
XceI RCATGY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XmaI CCCGGG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 5 cut(s) 63, 173, 285, 485, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.