RLG00000024751

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0019055
Physical Location & Seq
Reverse (-)
38749205 .. 38754405
5201 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024751

Sequence Viewer

Length: 615 bp
ATGGACGGAACCGCAGCCAGTCCGTCATCATGCGCGATTAGACCACCGGCCGCCCCCGCGGCTTTGGCTTCGTCATCTTCTCTGATCATGTCGTCCTCGACAGGGTCCTCAACGACAAGCACACCATCGACGGCCGAGCGGTCAGTTGTGTTAGTGTTTTGTGCTATGGGCTTGACTATGTTGGATGTTAATTTTGATGAGGAGATCACCGGTCCTGGTGACAAGGGCGACGATGATGAGATCGAGCCCGGTGTTGTTTCTCGCATGCCATCCAAGATCTCGTGGGCGCGGTCCCTCAGCATGGCCTCCAGCAGCTACGACAACAACTACAATCGCCGGTCTGAGTTTGACTCCGACAATCACCGATTTGAGGGTGTTCGCCTTTTCCGAGCTCAAATCGGCGAGTCGCGGGTTAAGTCAGGCCTTGTTGATAGGAGACTTCAAAGCGTCATCGTCTCTAAGAGTGAATTGGAGTTTGAATCGGAATCAGAACCAGAGGATTCGCAGTCAAGAAAAAGGAAGAAGGGTTCGGGTTCTCAACCGGTGCTCTCTCTCTCTGAGTTCGACTCTCTTCCTCTGCCAATGACGCCGTTTTTGCCCCAAAACAGCAACTAA

Protein Analysis

205

Amino Acids

21.97

Weight (kDa)

4.85

Isoelectric Point (pI)

81.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019055)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006222 RLG00000006795 RLG00000010090 RLG00000012725 RLG00000024751
rosa_multiflora Rmu_sc0000929.1_g000040 Rmu_sc0001762.1_g000043
rosa_roxburghii Rroxscaffold_5G00374360
rosa_samantha Rh3DG370200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 4 cut(s) 35, 59, 289, 409
AciI CCGC 7 cut(s) 12, 51, 57, 59, 139, 289, 409
AcoI YGGCCR 2 cut(s) 48, 132
AcyI GRCGYC 1 cut(s) 587
AfiI CCNNNNNNNGG 3 cut(s) 102, 301, 370
AgeI ACCGGT 2 cut(s) 209, 541
AgsI TTSAA 2 cut(s) 443, 479
AjnI CCWGG 1 cut(s) 214
AloI GAACNNNNNNTCC 2 cut(s) 511, 543
AluBI AGCT 2 cut(s) 315, 392
AluI AGCT 2 cut(s) 315, 392
Alw21I GWGCWC 2 cut(s) 394, 549
Alw26I GTCTC 2 cut(s) 430, 460
AoxI GGCC 4 cut(s) 48, 132, 303, 421
ApeKI GCWGC 2 cut(s) 14, 312
ArsI GACNNNNNNTTYG 2 cut(s) 577, 609
AsiGI ACCGGT 2 cut(s) 209, 541
AspLEI GCGC 2 cut(s) 35, 289
AspS9I GGNCC 3 cut(s) 105, 212, 291
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 3 cut(s) 199, 230, 353
AvaII GGWCC 3 cut(s) 105, 212, 291
BanII GRGCYC 2 cut(s) 249, 394
BauI CACGAG 1 cut(s) 280
Bbv12I GWGCWC 2 cut(s) 394, 549
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 26, 324
BccI CCATC 2 cut(s) 133, 277
BceAI ACGGC 2 cut(s) 147, 574
BciT130I CCWGG 1 cut(s) 216
BclI TGATCA 1 cut(s) 84
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 430, 460
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 276
BisI GCNGC 4 cut(s) 15, 51, 60, 313
BlsI GCNGC 4 cut(s) 16, 52, 61, 314
Bme1390I CCNGG 2 cut(s) 216, 249
Bme18I GGWCC 3 cut(s) 105, 212, 291
BmgT120I GGNCC 3 cut(s) 105, 212, 291
BmiI GGNNCC 3 cut(s) 10, 106, 293
BmrFI CCNGG 2 cut(s) 216, 249
BplI GAGNNNNNCTC 4 cut(s) 335, 367, 551, 583
BpmI CTGGAG 1 cut(s) 292
Bpu10I CCTNAGC 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 2 cut(s) 209, 541
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 301, 370
Bse118I RCCGGY 4 cut(s) 46, 209, 336, 541
Bse1I ACTGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 190, 269
BseLI CCNNNNNNNGG 3 cut(s) 102, 301, 370
BseMII CTCAG 3 cut(s) 310, 333, 549
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 215
BseX3I CGGCCG 2 cut(s) 48, 132
BseXI GCAGC 2 cut(s) 26, 324
Bsh1236I CGCG 4 cut(s) 35, 59, 289, 409
Bsh1285I CGRYCG 2 cut(s) 51, 135
BshFI GGCC 4 cut(s) 50, 134, 305, 423
BshTI ACCGGT 2 cut(s) 209, 541
BsiEI CGRYCG 2 cut(s) 51, 135
BsiHKAI GWGCWC 2 cut(s) 394, 549
BsiSI CCGG 5 cut(s) 47, 210, 249, 337, 542
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 3 cut(s) 102, 301, 370
BsmAI GTCTC 2 cut(s) 430, 460
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 4 cut(s) 50, 134, 305, 423
Bsp1286I GDGCHC 3 cut(s) 249, 394, 549
Bsp143I GATC 4 cut(s) 84, 204, 240, 276
BspACI CCGC 7 cut(s) 12, 51, 57, 59, 139, 289, 409
BspANI GGCC 4 cut(s) 50, 134, 305, 423
BspCNI CTCAG 3 cut(s) 309, 334, 550
BspFNI CGCG 4 cut(s) 35, 59, 289, 409
BspLI GGNNCC 3 cut(s) 10, 106, 293
BsrBI CCGCTC 1 cut(s) 139
BsrFI RCCGGY 4 cut(s) 46, 209, 336, 541
BsrI ACTGG 1 cut(s) 18
BssAI RCCGGY 4 cut(s) 46, 209, 336, 541
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 4 cut(s) 84, 204, 240, 276
BssNI GRCGYC 1 cut(s) 587
BssSI CACGAG 1 cut(s) 280
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 216
Bst6I CTCTTC 1 cut(s) 576
BstACI GRCGYC 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 4 cut(s) 296, 342, 459, 558
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 190, 269
BstFNI CGCG 4 cut(s) 35, 59, 289, 409
BstHHI GCGC 2 cut(s) 35, 289
BstKTI GATC 4 cut(s) 87, 207, 243, 279
BstMAI GTCTC 2 cut(s) 430, 460
BstMBI GATC 4 cut(s) 84, 204, 240, 276
BstMCI CGRYCG 2 cut(s) 51, 135
BstMWI GCNNNNNNNGC 5 cut(s) 56, 59, 65, 586, 595
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 214, 247
BstUI CGCG 4 cut(s) 35, 59, 289, 409
BstV1I GCAGC 2 cut(s) 26, 324
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BstZI CGGCCG 2 cut(s) 48, 132
BsuRI GGCC 4 cut(s) 50, 134, 305, 423
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 190, 269
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 2 cut(s) 35, 289
Cfr10I RCCGGY 4 cut(s) 46, 209, 336, 541
Cfr13I GGNCC 3 cut(s) 105, 212, 291
Cfr42I CCGCGG 1 cut(s) 60
CseI GACGC 2 cut(s) 436, 595
CspAI ACCGGT 2 cut(s) 209, 541
CviAII CATG 4 cut(s) 30, 88, 265, 301
DdeI CTNAG 4 cut(s) 296, 342, 459, 558
DpnI GATC 4 cut(s) 86, 206, 242, 278
DpnII GATC 4 cut(s) 84, 204, 240, 276
EaeI YGGCCR 2 cut(s) 48, 132
EagI CGGCCG 2 cut(s) 48, 132
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Ecl136II GAGCTC 1 cut(s) 392
EclXI CGGCCG 2 cut(s) 48, 132
Eco147I AGGCCT 1 cut(s) 423
Eco24I GRGCYC 2 cut(s) 249, 394
Eco47I GGWCC 3 cut(s) 105, 212, 291
Eco52I CGGCCG 2 cut(s) 48, 132
Eco53kI GAGCTC 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 392
EcoO109I RGGNCCY 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 214
EcoT38I GRGCYC 2 cut(s) 249, 394
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 4 cut(s) 33, 91, 268, 304
FaiI YATR 6 cut(s) 31, 89, 167, 179, 266, 302
FaqI GGGAC 1 cut(s) 277
FatI CATG 4 cut(s) 29, 87, 264, 300
FauI CCCGC 2 cut(s) 64, 402
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 4 cut(s) 15, 51, 60, 313
FokI GGATG 2 cut(s) 197, 256
FriOI GRGCYC 2 cut(s) 249, 394
Fsp4HI GCNGC 4 cut(s) 15, 51, 60, 313
GlaI GCGC 2 cut(s) 34, 288
GluI GCNGC 4 cut(s) 15, 51, 60, 313
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 4 cut(s) 50, 134, 305, 423
HapII CCGG 5 cut(s) 47, 210, 249, 337, 542
HgaI GACGC 2 cut(s) 436, 595
HhaI GCGC 2 cut(s) 35, 289
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 4 cut(s) 33, 91, 268, 304
Hin6I GCGC 2 cut(s) 33, 287
HinP1I GCGC 2 cut(s) 33, 287
HinfI GANTC 6 cut(s) 350, 404, 479, 485, 500, 566
HpaII CCGG 5 cut(s) 47, 210, 249, 337, 542
HphI GGTGA 3 cut(s) 199, 230, 353
Hpy188I TCNGA 7 cut(s) 84, 343, 355, 389, 484, 490, 559
Hpy188III TCNNGA 1 cut(s) 510
Hpy99I CGWCG 2 cut(s) 133, 233
HpyAV CCTTC 1 cut(s) 517
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 59, 65, 586, 595
HpyF3I CTNAG 4 cut(s) 296, 342, 459, 558
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 4 cut(s) 33, 91, 268, 304
HspAI GCGC 2 cut(s) 33, 287
Ksp22I TGATCA 1 cut(s) 84
KspI CCGCGG 1 cut(s) 60
Kzo9I GATC 4 cut(s) 84, 204, 240, 276
Lsp1109I GCAGC 2 cut(s) 26, 324
MaeIII GTNAC 1 cut(s) 218
MalI GATC 4 cut(s) 86, 206, 242, 278
MbiI CCGCTC 1 cut(s) 139
MboI GATC 4 cut(s) 84, 204, 240, 276
MboII GAAGA 3 cut(s) 69, 532, 563
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 3 cut(s) 249, 394, 549
MluCI AATT 2 cut(s) 190, 467
MlyI GAGTC 3 cut(s) 344, 413, 560
MmeI TCCRAC 2 cut(s) 162, 378
MnlI CCTC 8 cut(s) 106, 118, 193, 305, 316, 364, 490, 585
MseI TTAA 2 cut(s) 189, 414
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 5 cut(s) 47, 210, 249, 337, 542
MspR9I CCNGG 2 cut(s) 216, 249
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 4 cut(s) 35, 59, 289, 409
MwoI GCNNNNNNNGC 5 cut(s) 56, 59, 65, 586, 595
NciI CCSGG 1 cut(s) 249
NdeII GATC 4 cut(s) 84, 204, 240, 276
NlaIII CATG 4 cut(s) 33, 91, 268, 304
NlaIV GGNNCC 3 cut(s) 10, 106, 293
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 218
NspI RCATGY 1 cut(s) 268
PaeI GCATGC 1 cut(s) 268
PceI AGGCCT 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PfeI GAWTC 3 cut(s) 479, 485, 500
PflFI GACNNNGTC 1 cut(s) 103
PinAI ACCGGT 2 cut(s) 209, 541
PkrI GCNGC 4 cut(s) 16, 52, 61, 314
PleI GAGTC 3 cut(s) 344, 412, 560
PpsI GAGTC 3 cut(s) 344, 412, 560
PpuMI RGGWCCY 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 10, 106, 293
PspPI GGNCC 3 cut(s) 105, 212, 291
PspPPI RGGWCCY 1 cut(s) 105
PsuI RGATCY 1 cut(s) 276
PsyI GACNNNGTC 1 cut(s) 103
SacI GAGCTC 1 cut(s) 394
SacII CCGCGG 1 cut(s) 60
SaqAI TTAA 2 cut(s) 189, 414
SatI GCNGC 4 cut(s) 15, 51, 60, 313
Sau3AI GATC 4 cut(s) 84, 204, 240, 276
Sau96I GGNCC 3 cut(s) 105, 212, 291
SchI GAGTC 3 cut(s) 344, 413, 560
ScrFI CCNGG 2 cut(s) 216, 249
SduI GDGCHC 3 cut(s) 249, 394, 549
SetI ASST 2 cut(s) 317, 394
Sfr303I CCGCGG 1 cut(s) 60
SgrBI CCGCGG 1 cut(s) 60
SinI GGWCC 3 cut(s) 105, 212, 291
SphI GCATGC 1 cut(s) 268
Sse9I AATT 2 cut(s) 190, 467
SseBI AGGCCT 1 cut(s) 423
SsiI CCGC 7 cut(s) 12, 51, 57, 59, 139, 289, 409
SstI GAGCTC 1 cut(s) 394
StuI AGGCCT 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 214, 247
TaqI TCGA 4 cut(s) 98, 128, 243, 564
TasI AATT 2 cut(s) 190, 467
TauI GCSGC 2 cut(s) 53, 62
TfiI GAWTC 3 cut(s) 479, 485, 500
Tru1I TTAA 2 cut(s) 189, 414
Tru9I TTAA 2 cut(s) 189, 414
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 2 cut(s) 14, 312
Tsp45I GTSAC 1 cut(s) 218
TspGWI ACGGA 2 cut(s) 12, 21
Tth111I GACNNNGTC 1 cut(s) 103
VpaK11BI GGWCC 3 cut(s) 105, 212, 291
XceI RCATGY 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.