RLG00000010090

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019055
Physical Location & Seq
Forward (+)
62933564 .. 62934589
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010090

Sequence Viewer

Length: 501 bp
ATGAGACAACGACAACTAGTATTTGGTCTCAAAAATATTCAACCACATTCTTGGTTTTGTTTGAAGATCACCGGTCCCGGTGAGAGGCACAAAGACGAGGAGACCGAGCCCGGCGTTGTTTCTGGCGCGCCGTCCAAGGTCTCGTGTGCGCGATCCCTCAGTGTGGCTTCCAGCAGCTACGACAACACCGCTGCAATCGCCGGTCCGAGTTCAACTCCGACAATCGCCGATCTGAGGGTGTTCGCCTTCTCCGAGCTCAAATCAGTGAATCTCCGATTCAGTCGAGCCTTGCTGATCCGAGACTTCAAAGCGTCATCGTCTCGGATTGTTGTTGTTTGCTCCGGCAACGTCCTCTTGAGCGTCATCGTCATCGTCGTCGTCTCGGATTGCTCACACATGTTTGAGCGGCGGAATAGTCATCGAGTCCCAGGCAGCCGGGGATGCAGAAACGATTTCATTCTCTCTACTGCTCCTGATCATCAGCTTATGTTTAAAATTTGA

Protein Analysis

167

Amino Acids

18.2

Weight (kDa)

9.72

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019055)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006222 RLG00000006795 RLG00000010090 RLG00000012725 RLG00000024751
rosa_multiflora Rmu_sc0000929.1_g000040 Rmu_sc0001762.1_g000043
rosa_roxburghii Rroxscaffold_5G00374360
rosa_samantha Rh3DG370200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 406
AccII CGCG 2 cut(s) 128, 151
AciI CCGC 3 cut(s) 189, 406, 409
AclWI GGATC 2 cut(s) 147, 289
AcsI RAATTY 1 cut(s) 495
AfiI CCNNNNNNNGG 3 cut(s) 84, 163, 234
AflIII ACRYGT 1 cut(s) 396
AgeI ACCGGT 1 cut(s) 71
AgsI TTSAA 4 cut(s) 41, 64, 213, 307
AhlI ACTAGT 1 cut(s) 16
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 3 cut(s) 177, 256, 484
AluI AGCT 3 cut(s) 177, 256, 484
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 6 cut(s) 32, 95, 145, 294, 324, 385
AlwI GGATC 2 cut(s) 147, 289
ApeKI GCWGC 3 cut(s) 174, 191, 432
ApoI RAATTY 1 cut(s) 495
AscI GGCGCGCC 1 cut(s) 126
AsiGI ACCGGT 1 cut(s) 71
AspLEI GCGC 3 cut(s) 128, 130, 151
AspS9I GGNCC 2 cut(s) 74, 203
AsuC2I CCSGG 3 cut(s) 78, 111, 437
AsuHPI GGTGA 2 cut(s) 61, 92
AvaII GGWCC 2 cut(s) 74, 203
BanII GRGCYC 2 cut(s) 111, 258
BauI CACGAG 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 3 cut(s) 178, 186, 444
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 429
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 3 cut(s) 78, 111, 437
BcoDI GTCTC 6 cut(s) 32, 95, 145, 294, 324, 385
BcuI ACTAGT 1 cut(s) 16
BfaI CTAG 1 cut(s) 17
BisI GCNGC 4 cut(s) 175, 192, 407, 433
BlsI GCNGC 4 cut(s) 176, 193, 408, 434
Bme1390I CCNGG 4 cut(s) 78, 111, 429, 437
Bme18I GGWCC 2 cut(s) 74, 203
BmgT120I GGNCC 2 cut(s) 74, 203
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 4 cut(s) 78, 111, 429, 437
BmsI GCATC 1 cut(s) 431
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 3 cut(s) 78, 111, 437
BsaI GGTCTC 3 cut(s) 32, 95, 145
BsaJI CCNNGG 3 cut(s) 135, 427, 436
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 163, 234
Bse118I RCCGGY 2 cut(s) 71, 200
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 3 cut(s) 135, 427, 436
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 3 cut(s) 84, 163, 234
BseMII CTCAG 2 cut(s) 172, 224
BsePI GCGCGC 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 3 cut(s) 178, 186, 444
Bsh1236I CGCG 2 cut(s) 128, 151
BshTI ACCGGT 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 6 cut(s) 72, 78, 111, 201, 342, 436
BslFI GGGAC 2 cut(s) 60, 410
BslI CCNNNNNNNGG 3 cut(s) 84, 163, 234
BsmAI GTCTC 6 cut(s) 32, 95, 145, 294, 324, 385
BsmBI CGTCTC 2 cut(s) 324, 385
BsmFI GGGAC 2 cut(s) 60, 410
Bso31I GGTCTC 3 cut(s) 32, 95, 145
Bsp1286I GDGCHC 2 cut(s) 111, 258
Bsp143I GATC 5 cut(s) 66, 152, 229, 294, 475
BspACI CCGC 3 cut(s) 189, 406, 409
BspCNI CTCAG 2 cut(s) 171, 225
BspFNI CGCG 2 cut(s) 128, 151
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 2 cut(s) 147, 289
BspTNI GGTCTC 3 cut(s) 32, 95, 145
BsrBI CCGCTC 1 cut(s) 406
BsrFI RCCGGY 2 cut(s) 71, 200
BssAI RCCGGY 2 cut(s) 71, 200
BssECI CCNNGG 3 cut(s) 135, 427, 436
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 5 cut(s) 66, 152, 229, 294, 475
BssSI CACGAG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 2 cut(s) 158, 233
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 2 cut(s) 128, 151
BstHHI GCGC 3 cut(s) 128, 130, 151
BstKTI GATC 5 cut(s) 69, 155, 232, 297, 478
BstMAI GTCTC 6 cut(s) 32, 95, 145, 294, 324, 385
BstMBI GATC 5 cut(s) 66, 152, 229, 294, 475
BstMWI GCNNNNNNNGC 2 cut(s) 197, 441
BstNI CCWGG 1 cut(s) 429
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 4 cut(s) 76, 109, 427, 435
BstUI CGCG 2 cut(s) 128, 151
BstV1I GCAGC 3 cut(s) 178, 186, 444
BstXI CCANNNNNNTGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 446
BtsIMutI CAGTG 2 cut(s) 166, 270
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 3 cut(s) 128, 130, 151
Cfr10I RCCGGY 2 cut(s) 71, 200
Cfr13I GGNCC 2 cut(s) 74, 203
CpoI CGGWCCG 1 cut(s) 203
CseI GACGC 2 cut(s) 300, 349
CspAI ACCGGT 1 cut(s) 71
CspI CGGWCCG 1 cut(s) 203
CviAII CATG 1 cut(s) 397
CviJI RGCY 7 cut(s) 109, 167, 177, 256, 287, 435, 484
CviKI_1 RGCY 7 cut(s) 109, 167, 177, 256, 287, 435, 484
DdeI CTNAG 2 cut(s) 158, 233
DpnI GATC 5 cut(s) 68, 154, 231, 296, 477
DpnII GATC 5 cut(s) 66, 152, 229, 294, 475
DraI TTTAAA 1 cut(s) 493
EciI GGCGGA 1 cut(s) 424
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 2 cut(s) 111, 258
Eco31I GGTCTC 3 cut(s) 32, 95, 145
Eco47I GGWCC 2 cut(s) 74, 203
Eco53kI GAGCTC 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 135
EcoT38I GRGCYC 2 cut(s) 111, 258
ErhI CCWWGG 1 cut(s) 135
Esp3I CGTCTC 2 cut(s) 324, 385
FaeI CATG 1 cut(s) 400
FaiI YATR 2 cut(s) 398, 488
FaqI GGGAC 2 cut(s) 60, 410
FatI CATG 1 cut(s) 396
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 4 cut(s) 175, 192, 407, 433
FokI GGATG 1 cut(s) 453
FriOI GRGCYC 2 cut(s) 111, 258
Fsp4HI GCNGC 4 cut(s) 175, 192, 407, 433
FspBI CTAG 1 cut(s) 17
GlaI GCGC 3 cut(s) 127, 129, 150
GluI GCNGC 4 cut(s) 175, 192, 407, 433
HapII CCGG 6 cut(s) 72, 78, 111, 201, 342, 436
HgaI GACGC 2 cut(s) 300, 349
HhaI GCGC 3 cut(s) 128, 130, 151
Hin1II CATG 1 cut(s) 400
Hin6I GCGC 3 cut(s) 126, 128, 149
HinP1I GCGC 3 cut(s) 126, 128, 149
HinfI GANTC 3 cut(s) 268, 276, 423
HpaII CCGG 6 cut(s) 72, 78, 111, 201, 342, 436
HphI GGTGA 2 cut(s) 61, 92
Hpy188I TCNGA 8 cut(s) 207, 219, 234, 253, 275, 299, 324, 385
Hpy188III TCNNGA 2 cut(s) 355, 473
Hpy99I CGWCG 2 cut(s) 377, 380
HpyAV CCTTC 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 2 cut(s) 194, 444
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 441
HpyF3I CTNAG 2 cut(s) 158, 233
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 1 cut(s) 400
HspAI GCGC 3 cut(s) 126, 128, 149
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 5 cut(s) 66, 152, 229, 294, 475
LmnI GCTCC 2 cut(s) 344, 475
Lsp1109I GCAGC 3 cut(s) 178, 186, 444
LweI GCATC 1 cut(s) 431
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 348
MalI GATC 5 cut(s) 68, 154, 231, 296, 477
MbiI CCGCTC 1 cut(s) 406
MboI GATC 5 cut(s) 66, 152, 229, 294, 475
MboII GAAGA 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 111, 258
MluCI AATT 1 cut(s) 495
MlyI GAGTC 1 cut(s) 432
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 5 cut(s) 78, 91, 167, 228, 362
MseI TTAA 1 cut(s) 492
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 6 cut(s) 72, 78, 111, 201, 342, 436
MspR9I CCNGG 4 cut(s) 78, 111, 429, 437
MvaI CCWGG 1 cut(s) 429
MvnI CGCG 2 cut(s) 128, 151
MwoI GCNNNNNNNGC 2 cut(s) 197, 441
NciI CCSGG 3 cut(s) 78, 111, 437
NdeII GATC 5 cut(s) 66, 152, 229, 294, 475
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 1 cut(s) 76
NspI RCATGY 1 cut(s) 400
PalAI GGCGCGCC 1 cut(s) 126
PauI GCGCGC 1 cut(s) 126
PciI ACATGT 1 cut(s) 396
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 249, 372
PfeI GAWTC 2 cut(s) 268, 276
PinAI ACCGGT 1 cut(s) 71
PkrI GCNGC 4 cut(s) 176, 193, 408, 434
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PscI ACATGT 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 74, 203
PteI GCGCGC 1 cut(s) 126
Rsr2I CGGWCCG 1 cut(s) 203
RsrII CGGWCCG 1 cut(s) 203
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 4 cut(s) 175, 192, 407, 433
Sau3AI GATC 5 cut(s) 66, 152, 229, 294, 475
Sau96I GGNCC 2 cut(s) 74, 203
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 4 cut(s) 78, 111, 429, 437
SduI GDGCHC 2 cut(s) 111, 258
SetI ASST 5 cut(s) 141, 179, 258, 351, 486
SfaNI GCATC 1 cut(s) 431
SgsI GGCGCGCC 1 cut(s) 126
SinI GGWCC 2 cut(s) 74, 203
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
SpeI ACTAGT 1 cut(s) 16
Sse9I AATT 1 cut(s) 495
SsiI CCGC 3 cut(s) 189, 406, 409
SspI AATATT 1 cut(s) 37
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 4 cut(s) 76, 109, 427, 435
StyI CCWWGG 1 cut(s) 135
TaiI ACGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 283, 421
TaqII GACCGA 1 cut(s) 119
TasI AATT 1 cut(s) 495
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 2 cut(s) 268, 276
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 2 cut(s) 166, 270
TseI GCWGC 3 cut(s) 174, 191, 432
TspDTI ATGAA 1 cut(s) 445
TspRI CASTG 2 cut(s) 166, 270
VpaK11BI GGWCC 2 cut(s) 74, 203
XapI RAATTY 1 cut(s) 495
XceI RCATGY 1 cut(s) 400
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.