Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000929.1

Orthogroup ID

OG0019055

Physical Location & Seq

Genomic Coordinates Forward (+)

140515 .. 146710

Gene Structure 6196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000929.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgactatttccaatagcaattctgaggaagatatatgggtgatgaagttcgcggacattttcggccgggcattatcggcagtgacttctgcccagttttcatgggtcaagatgttcaaggagccaactatggtgaagattgccaatgatgtggaggcaaacaatcaaaaggtgaaagtgtatggtaggaattatacattcattgagaccagatggaagaagctcagagttggtgatcttgtcaaggtgcacaaggatgagtactttcttgctgatctgcttatgctttcatcaagctatgaggatgacatttgctatgtggaaactatgaaccttgatggagaaacaaatttaaaattgaaccatgcactggaggcgacatcccatcttcatgatgaaaagtccttggaaagatttagggcagtgatcaagtatcacgatgacgaggagaccgagcccgacgttgtttctcgctcgccatccaaggtctcatgggcgcggtccctcaacgtggcctccaacagctacgacaacaccaactacaatcaccagtccgagttcgactccgacaatcgccgatctgagggtgttcgccttctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

200

Amino Acids

23.16

Weight (kDa)

5.29

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019055)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006222 RLG00000006795 RLG00000010090 RLG00000012725 RLG00000024751
rosa_multiflora	Rmu_sc0000929.1_g000040 Rmu_sc0001762.1_g000043
rosa_roxburghii	Rroxscaffold_5G00374360
rosa_samantha	Rh3DG370200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccII	CGCG	2 cut(s)	53, 499
AciI	CCGC	2 cut(s)	53, 499
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	349
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	3 cut(s)	370, 511, 583
AgsI	TTSAA	2 cut(s)	118, 361
AluBI	AGCT	3 cut(s)	223, 297, 525
AluI	AGCT	3 cut(s)	223, 297, 525
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	3 cut(s)	200, 443, 493
Alw44I	GTGCAC	1 cut(s)	248
AoxI	GGCC	2 cut(s)	64, 513
ApaLI	GTGCAC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	501
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	5 cut(s)	52, 145, 184, 245, 539
AvaII	GGWCC	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	4 cut(s)	207, 332, 393, 487
BclI	TGATCA	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	3 cut(s)	200, 443, 493
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	501
BmiI	GGNNCC	2 cut(s)	123, 503
BmrFI	CCNGG	1 cut(s)	68
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	68
BsaI	GGTCTC	3 cut(s)	200, 443, 493
BsaJI	CCNNGG	2 cut(s)	405, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 511, 583
Bse1I	ACTGG	3 cut(s)	94, 375, 550
BseDI	CCNNGG	2 cut(s)	405, 483
BseGI	GGATG	4 cut(s)	262, 310, 380, 479
BseLI	CCNNNNNNNGG	3 cut(s)	370, 511, 583
BseMII	CTCAG	3 cut(s)	15, 238, 573
BseNI	ACTGG	3 cut(s)	94, 375, 550
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	252
BseX3I	CGGCCG	1 cut(s)	64
Bsh1236I	CGCG	2 cut(s)	53, 499
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	66, 515
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	3 cut(s)	370, 511, 583
BsmAI	GTCTC	3 cut(s)	200, 443, 493
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	2 cut(s)	66, 515
Bso31I	GGTCTC	3 cut(s)	200, 443, 493
Bsp1286I	GDGCHC	2 cut(s)	252, 459
Bsp143I	GATC	4 cut(s)	235, 274, 426, 578
BspACI	CCGC	2 cut(s)	53, 499
BspANI	GGCC	2 cut(s)	66, 515
BspCNI	CTCAG	3 cut(s)	16, 237, 574
BspFNI	CGCG	2 cut(s)	53, 499
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	123, 503
BspTNI	GGTCTC	3 cut(s)	200, 443, 493
BsrI	ACTGG	3 cut(s)	94, 375, 550
BssECI	CCNNGG	2 cut(s)	405, 483
BssMI	GATC	4 cut(s)	235, 274, 426, 578
BssT1I	CCWWGG	2 cut(s)	405, 483
BstC8I	GCNNGC	1 cut(s)	476
BstDEI	CTNAG	3 cut(s)	24, 224, 582
BstF5I	GGATG	4 cut(s)	262, 310, 380, 479
BstFNI	CGCG	2 cut(s)	53, 499
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	4 cut(s)	238, 277, 429, 581
BstMAI	GTCTC	3 cut(s)	200, 443, 493
BstMBI	GATC	4 cut(s)	235, 274, 426, 578
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 374
BstSCI	CCNGG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	2 cut(s)	53, 499
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	66, 515
BtsCI	GGATG	4 cut(s)	262, 310, 380, 479
BtsI	GCAGTG	2 cut(s)	87, 429
BtsIMutI	CAGTG	3 cut(s)	87, 368, 429
Cac8I	GCNNGC	1 cut(s)	476
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	501
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	4 cut(s)	102, 365, 392, 492
CviJI	RGCY	7 cut(s)	66, 124, 223, 297, 457, 515, 525
CviKI_1	RGCY	7 cut(s)	66, 124, 223, 297, 457, 515, 525
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	24, 224, 582
DpnI	GATC	4 cut(s)	237, 276, 428, 580
DpnII	GATC	4 cut(s)	235, 274, 426, 578
DraI	TTTAAA	1 cut(s)	354
EaeI	YGGCCR	1 cut(s)	64
EagI	CGGCCG	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	405, 483
Eco24I	GRGCYC	1 cut(s)	459
Eco31I	GGTCTC	3 cut(s)	200, 443, 493
Eco47I	GGWCC	1 cut(s)	501
Eco52I	CGGCCG	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	405, 483
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	2 cut(s)	405, 483
FaeI	CATG	4 cut(s)	105, 368, 395, 495
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	4 cut(s)	101, 364, 391, 491
FbaI	TGATCA	1 cut(s)	426
FokI	GGATG	4 cut(s)	269, 317, 367, 466
FriOI	GRGCYC	1 cut(s)	459
GlaI	GCGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	66, 515
HapII	CCGG	1 cut(s)	67
HhaI	GCGC	1 cut(s)	499
Hin1II	CATG	4 cut(s)	105, 368, 395, 495
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HinfI	GANTC	1 cut(s)	563
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	5 cut(s)	52, 145, 184, 245, 539
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	6 cut(s)	25, 227, 556, 568, 583, 602
Hpy188III	TCNNGA	3 cut(s)	109, 392, 437
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	464
HpyCH4IV	ACGT	2 cut(s)	462, 510
HpyCH4V	TGCA	2 cut(s)	250, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 374
HpyF3I	CTNAG	3 cut(s)	24, 224, 582
HpySE526I	ACGT	2 cut(s)	462, 510
Hsp92II	CATG	4 cut(s)	105, 368, 395, 495
HspAI	GCGC	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	235, 274, 426, 578
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	5 cut(s)	80, 107, 223, 356, 563
MaeII	ACGT	2 cut(s)	462, 510
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	4 cut(s)	237, 276, 428, 580
MboI	GATC	4 cut(s)	235, 274, 426, 578
MboII	GAAGA	4 cut(s)	41, 148, 229, 380
MhlI	GDGCHC	2 cut(s)	252, 459
MluCI	AATT	4 cut(s)	19, 190, 349, 356
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	2 cut(s)	543, 591
MnlI	CCTC	8 cut(s)	19, 148, 295, 367, 439, 515, 526, 577
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	2 cut(s)	255, 390
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	68
MvnI	CGCG	2 cut(s)	53, 499
MwoI	GCNNNNNNNGC	2 cut(s)	77, 374
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	4 cut(s)	235, 274, 426, 578
NlaIII	CATG	4 cut(s)	105, 368, 395, 495
NlaIV	GGNNCC	2 cut(s)	123, 503
NmuCI	GTSAC	1 cut(s)	82
PagI	TCATGA	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PflMI	CCANNNNNTGG	1 cut(s)	370
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
PspN4I	GGNNCC	2 cut(s)	123, 503
PspPI	GGNCC	1 cut(s)	501
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	2 cut(s)	255, 390
SaqAI	TTAA	1 cut(s)	353
Sau3AI	GATC	4 cut(s)	235, 274, 426, 578
Sau96I	GGNCC	1 cut(s)	501
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	252, 459
SetI	ASST	9 cut(s)	174, 225, 249, 299, 336, 465, 489, 513, 527
SinI	GGWCC	1 cut(s)	501
SmiMI	CAYNNNNRTG	2 cut(s)	255, 390
Sse9I	AATT	4 cut(s)	19, 190, 349, 356
SsiI	CCGC	2 cut(s)	53, 499
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	2 cut(s)	405, 483
TaiI	ACGT	2 cut(s)	465, 513
TaqI	TCGA	1 cut(s)	561
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	4 cut(s)	19, 190, 349, 356
TatI	WGTACW	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	3 cut(s)	87, 375, 429
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	7 cut(s)	59, 90, 190, 279, 344, 380, 411
TspRI	CASTG	3 cut(s)	87, 375, 429
Van91I	CCANNNNNTGG	1 cut(s)	370
VneI	GTGCAC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	501
XapI	RAATTY	1 cut(s)	349
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.