Rroxscaffold_5G00374360

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0019055
Physical Location & Seq
Forward (+)
55431774 .. 55433210
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374360.1

Sequence Viewer

Length: 516 bp
ATGAAGTGTTTCCATTTCACCATAAGCAAGAGGCGCGACGACGATGAGACCGAGCTCGGCATTGTTTCTCGCGCGCCGTCCAAAGTCTCGTGGGCGCGGTCCCTCGCCGTGGCCTCCGGCGGTTACGACAACACCAACTACAATCGACGGTCCGAATTTGACTCCGACTCCGCGACATGTAGGACTTGGCGCCTTCTACGCCTTGCCGAGTTAGCTCCGTCCAACTATTTCGAGGGTGGTCGCCTTCTCCAAGCTCAAATCCCCGAGTCGTGGATTCGGCCGAGCCTTGCCGATCGGCGAGGGAGGGTTTGCAGTGACCAAACTTGCAACCTTCCCACTTCCAATCATCTCAATCGCAACACCGACTCGGACGTTATCAAACCTTTGAAGCTTCATGCACCGGTGCGGGAGTTCGGGTCCGTGCTTTGCTCCGGGTTAGGGCTCGTGAGAGGCGTCGCTTGTGGGATGCAGATGTATGATGTCTGGGAAGTGAATAAACCAAACATTGCTGACTAG

Protein Analysis

171

Amino Acids

19.19

Weight (kDa)

8.58

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019055)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006222 RLG00000006795 RLG00000010090 RLG00000012725 RLG00000024751
rosa_multiflora Rmu_sc0000929.1_g000040 Rmu_sc0001762.1_g000043
rosa_roxburghii Rroxscaffold_5G00374360
rosa_samantha Rh3DG370200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 189
AccII CGCG 5 cut(s) 36, 72, 74, 97, 173
AciI CCGC 4 cut(s) 97, 120, 171, 406
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 1 cut(s) 155
AcyI GRCGYC 2 cut(s) 190, 453
AfiI CCNNNNNNNGG 3 cut(s) 109, 270, 438
AflIII ACRYGT 1 cut(s) 176
AgeI ACCGGT 1 cut(s) 400
AgsI TTSAA 1 cut(s) 388
AluBI AGCT 4 cut(s) 55, 215, 254, 391
AluI AGCT 4 cut(s) 55, 215, 254, 391
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 41, 91
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 2 cut(s) 111, 278
ApoI RAATTY 1 cut(s) 155
AsiGI ACCGGT 1 cut(s) 400
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 5 cut(s) 36, 74, 76, 97, 192
AspS9I GGNCC 3 cut(s) 99, 150, 417
AsuC2I CCSGG 1 cut(s) 433
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 3 cut(s) 99, 150, 417
BanI GGYRCC 1 cut(s) 189
BanII GRGCYC 2 cut(s) 57, 444
BauI CACGAG 2 cut(s) 88, 443
Bbv12I GWGCWC 1 cut(s) 57
BceAI ACGGC 2 cut(s) 61, 92
BcnI CCSGG 1 cut(s) 433
BcoDI GTCTC 2 cut(s) 41, 91
BfaI CTAG 1 cut(s) 514
BfoI RGCGCY 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 433
Bme18I GGWCC 3 cut(s) 99, 150, 417
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 3 cut(s) 99, 150, 417
BmiI GGNNCC 3 cut(s) 101, 191, 418
BmrFI CCNGG 1 cut(s) 433
BmsI GCATC 1 cut(s) 456
BpuMI CCSGG 1 cut(s) 433
BsaHI GRCGYC 2 cut(s) 190, 453
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 401, 431
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 270, 438
Bse118I RCCGGY 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 471
BseLI CCNNNNNNNGG 3 cut(s) 109, 270, 438
BseMI GCAATG 1 cut(s) 504
BsePI GCGCGC 1 cut(s) 72
BseX3I CGGCCG 1 cut(s) 278
Bsh1236I CGCG 5 cut(s) 36, 72, 74, 97, 173
Bsh1285I CGRYCG 2 cut(s) 281, 295
BshFI GGCC 2 cut(s) 113, 280
BshNI GGYRCC 1 cut(s) 189
BshTI ACCGGT 1 cut(s) 400
BsiEI CGRYCG 2 cut(s) 281, 295
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 3 cut(s) 117, 401, 432
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 3 cut(s) 109, 270, 438
BsmAI GTCTC 2 cut(s) 41, 91
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 2 cut(s) 113, 280
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 57, 444
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 4 cut(s) 97, 120, 171, 406
BspANI GGCC 2 cut(s) 113, 280
BspFNI CGCG 5 cut(s) 36, 72, 74, 97, 173
BspLI GGNNCC 3 cut(s) 101, 191, 418
BspT107I GGYRCC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 108
BssHII GCGCGC 1 cut(s) 72
BssMI GATC 1 cut(s) 292
BssNI GRCGYC 2 cut(s) 190, 453
BssSI CACGAG 2 cut(s) 88, 443
Bst2BI CACGAG 2 cut(s) 88, 443
Bst4CI ACNGT 1 cut(s) 150
BstACI GRCGYC 2 cut(s) 190, 453
BstC8I GCNNGC 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 471
BstFNI CGCG 5 cut(s) 36, 72, 74, 97, 173
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 5 cut(s) 36, 74, 76, 97, 192
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 2 cut(s) 41, 91
BstMBI GATC 1 cut(s) 292
BstMCI CGRYCG 2 cut(s) 281, 295
BstMWI GCNNNNNNNGC 3 cut(s) 33, 198, 212
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 431
BstUI CGCG 5 cut(s) 36, 72, 74, 97, 173
BstZI CGGCCG 1 cut(s) 278
BsuRI GGCC 2 cut(s) 113, 280
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 471
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 5 cut(s) 36, 74, 76, 97, 192
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 3 cut(s) 99, 150, 417
CpoI CGGWCCG 1 cut(s) 150
CseI GACGC 1 cut(s) 442
CspAI ACCGGT 1 cut(s) 400
CspI CGGWCCG 1 cut(s) 150
CviAII CATG 2 cut(s) 177, 395
CviJI RGCY 8 cut(s) 55, 113, 215, 254, 280, 285, 391, 442
CviKI_1 RGCY 8 cut(s) 55, 113, 215, 254, 280, 285, 391, 442
DinI GGCGCC 1 cut(s) 191
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 278
EagI CGGCCG 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 55
EclXI CGGCCG 1 cut(s) 278
Eco24I GRGCYC 2 cut(s) 57, 444
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 3 cut(s) 99, 150, 417
Eco52I CGGCCG 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 55
EcoT38I GRGCYC 2 cut(s) 57, 444
EgeI GGCGCC 1 cut(s) 191
EheI GGCGCC 1 cut(s) 191
FaeI CATG 2 cut(s) 180, 398
FaiI YATR 4 cut(s) 23, 178, 396, 477
FaqI GGGAC 1 cut(s) 85
FatI CATG 2 cut(s) 176, 394
FauI CCCGC 1 cut(s) 399
FokI GGATG 1 cut(s) 478
FriOI GRGCYC 2 cut(s) 57, 444
FspBI CTAG 1 cut(s) 514
GlaI GCGC 5 cut(s) 35, 73, 75, 96, 191
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 2 cut(s) 113, 280
HapII CCGG 3 cut(s) 117, 401, 432
HgaI GACGC 1 cut(s) 442
HhaI GCGC 5 cut(s) 36, 74, 76, 97, 192
Hin1I GRCGYC 2 cut(s) 190, 453
Hin1II CATG 2 cut(s) 180, 398
Hin6I GCGC 5 cut(s) 34, 72, 74, 95, 190
HinP1I GCGC 5 cut(s) 34, 72, 74, 95, 190
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 5 cut(s) 161, 167, 266, 274, 365
HpaII CCGG 3 cut(s) 117, 401, 432
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 3 cut(s) 154, 166, 370
Hpy188III TCNNGA 1 cut(s) 445
Hpy99I CGWCG 4 cut(s) 41, 44, 150, 458
HpyAV CCTTC 3 cut(s) 203, 254, 341
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 312, 327, 398, 469
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 198, 212
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 2 cut(s) 190, 453
Hsp92II CATG 2 cut(s) 180, 398
HspAI GCGC 5 cut(s) 34, 72, 74, 95, 190
KasI GGCGCC 1 cut(s) 189
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 2 cut(s) 220, 434
LpnPI CCDG 4 cut(s) 130, 414, 445, 469
LweI GCATC 1 cut(s) 456
MaeI CTAG 1 cut(s) 514
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 122, 314
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MhlI GDGCHC 2 cut(s) 57, 444
MluCI AATT 1 cut(s) 155
Mly113I GGCGCC 1 cut(s) 190
MlyI GAGTC 4 cut(s) 155, 161, 275, 359
MmeI TCCRAC 2 cut(s) 189, 246
MnlI CCTC 7 cut(s) 24, 113, 124, 226, 293, 297, 443
MroXI GAANNNNTTC 1 cut(s) 8
MspI CCGG 3 cut(s) 117, 401, 432
MspR9I CCNGG 1 cut(s) 433
MvnI CGCG 5 cut(s) 36, 72, 74, 97, 173
MwoI GCNNNNNNNGC 3 cut(s) 33, 198, 212
NarI GGCGCC 1 cut(s) 190
NciI CCSGG 1 cut(s) 433
NdeII GATC 1 cut(s) 292
NlaIII CATG 2 cut(s) 180, 398
NlaIV GGNNCC 3 cut(s) 101, 191, 418
NmeAIII GCCGAG 3 cut(s) 36, 232, 306
NmuCI GTSAC 1 cut(s) 314
NspI RCATGY 1 cut(s) 180
PauI GCGCGC 1 cut(s) 72
PciI ACATGT 1 cut(s) 176
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 450
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 274
PinAI ACCGGT 1 cut(s) 400
Ple19I CGATCG 1 cut(s) 295
PleI GAGTC 4 cut(s) 155, 161, 274, 359
PluTI GGCGCC 1 cut(s) 193
PpsI GAGTC 4 cut(s) 155, 161, 274, 359
PscI ACATGT 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 101, 191, 418
PspPI GGNCC 3 cut(s) 99, 150, 417
PteI GCGCGC 1 cut(s) 72
PvuI CGATCG 1 cut(s) 295
Rsr2I CGGWCCG 1 cut(s) 150
RsrII CGGWCCG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 3 cut(s) 99, 150, 417
SchI GAGTC 4 cut(s) 155, 161, 275, 359
ScrFI CCNGG 1 cut(s) 433
SduI GDGCHC 2 cut(s) 57, 444
SetI ASST 7 cut(s) 57, 217, 256, 333, 375, 385, 393
SfaNI GCATC 1 cut(s) 456
SfoI GGCGCC 1 cut(s) 191
SgrAI CRCCGGYG 1 cut(s) 400
SinI GGWCC 3 cut(s) 99, 150, 417
Sse9I AATT 1 cut(s) 155
SsiI CCGC 4 cut(s) 97, 120, 171, 406
SspDI GGCGCC 1 cut(s) 189
SspMI CTAG 1 cut(s) 514
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 431
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 1 cut(s) 375
TaqI TCGA 2 cut(s) 145, 231
TaqII GACCGA 1 cut(s) 65
TasI AATT 1 cut(s) 155
TfiI GAWTC 1 cut(s) 274
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 17, 383
TspGWI ACGGA 2 cut(s) 207, 409
TspRI CASTG 1 cut(s) 319
VpaK11BI GGWCC 3 cut(s) 99, 150, 417
XapI RAATTY 1 cut(s) 155
XceI RCATGY 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.