RLG00000006795

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019055
Physical Location & Seq
Reverse (-)
10645837 .. 10646966
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006795

Sequence Viewer

Length: 480 bp
ATGAATTGTTTCCAGTCCAAGGTCTCATGGGTGCGGTCCCTCAGCATGGTCTCTAGCAGCTACGACAACACCAACTACAATCGGCGGTCCGAATTCGACTCAGACTCCCTCGACATGTCAGACTCAGCAGCCTTCTACGCCTTGCTGAGTCAGCTCCAGGCCAATTATCTAAGGGTGGTCGCCTTCTCCAAGCTCAAATCAGCGAGTCACGGGTTTAGTCGAGCCTTGCTGATCAGCGAGGGAGGGTTTGCAGGTGACCAAACTTGCAGCCTTCCCACTTCCAATAGTCGCAATTGCAACACAAACTCGGACGTCATCAGACCTTTGAAGCTCCACCCACCAGTGCGGGAGTTCAGGTCCAGGCTTTGCTCCAGACAGGCTGCAGATAATGTTCATCCATGCAATGAAAAATATTTTAGAAGCTCAGTCGACCTTGATCTCTCCACTTTTGTAATTGGGAGTTGGGGACCTACGCCATAA

Protein Analysis

160

Amino Acids

17.74

Weight (kDa)

8.66

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019055)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006222 RLG00000006795 RLG00000010090 RLG00000012725 RLG00000024751
rosa_multiflora Rmu_sc0000929.1_g000040 Rmu_sc0001762.1_g000043
rosa_roxburghii Rroxscaffold_5G00374360
rosa_samantha Rh3DG370200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 242
AatII GACGTC 1 cut(s) 315
Acc36I ACCTGC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 429
AciI CCGC 3 cut(s) 34, 85, 346
AcsI RAATTY 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 19, 46
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 2 cut(s) 156, 359
AluBI AGCT 5 cut(s) 60, 154, 193, 331, 423
AluI AGCT 5 cut(s) 60, 154, 193, 331, 423
Alw26I GTCTC 2 cut(s) 28, 55
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 4 cut(s) 57, 128, 267, 380
ApoI RAATTY 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 4 cut(s) 36, 87, 357, 467
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 4 cut(s) 36, 87, 357, 467
BbvCI CCTCAGC 1 cut(s) 41
BbvI GCAGC 4 cut(s) 69, 140, 279, 367
BciT130I CCWGG 2 cut(s) 158, 361
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 28, 55
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 4 cut(s) 58, 129, 268, 381
BlsI GCNGC 4 cut(s) 59, 130, 269, 382
Bme1390I CCNGG 2 cut(s) 158, 361
Bme18I GGWCC 4 cut(s) 36, 87, 357, 467
BmgT120I GGNCC 4 cut(s) 36, 87, 357, 467
BmiI GGNNCC 2 cut(s) 38, 468
BmrFI CCNGG 2 cut(s) 158, 361
BpmI CTGGAG 2 cut(s) 140, 355
Bpu10I CCTNAGC 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 312
BsaI GGTCTC 2 cut(s) 28, 55
BsaJI CCNNGG 1 cut(s) 18
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 341, 371
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 46
Bse1I ACTGG 2 cut(s) 13, 341
Bse3DI GCAATG 1 cut(s) 409
BseBI CCWGG 2 cut(s) 158, 361
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 2 cut(s) 19, 46
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 5 cut(s) 55, 114, 137, 138, 438
BseNI ACTGG 2 cut(s) 13, 341
BseXI GCAGC 4 cut(s) 69, 140, 279, 367
BshFI GGCC 1 cut(s) 161
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 19, 46
BsmAI GTCTC 2 cut(s) 28, 55
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 2 cut(s) 28, 55
Bsp143I GATC 2 cut(s) 231, 436
BspACI CCGC 3 cut(s) 34, 85, 346
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 5 cut(s) 54, 113, 137, 138, 437
BspLI GGNNCC 2 cut(s) 38, 468
BspMAI CTGCAG 1 cut(s) 385
BspMI ACCTGC 1 cut(s) 242
BspTNI GGTCTC 2 cut(s) 28, 55
BsrDI GCAATG 1 cut(s) 409
BsrI ACTGG 2 cut(s) 13, 341
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 231, 436
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 158, 361
BstACI GRCGYC 1 cut(s) 312
BstDEI CTNAG 6 cut(s) 41, 100, 124, 146, 170, 424
BstEII GGTNACC 1 cut(s) 254
BstF5I GGATG 1 cut(s) 394
BstKTI GATC 2 cut(s) 234, 439
BstMAI GTCTC 2 cut(s) 28, 55
BstMBI GATC 2 cut(s) 231, 436
BstMWI GCNNNNNNNGC 2 cut(s) 137, 151
BstNI CCWGG 2 cut(s) 158, 361
BstNSI RCATGY 1 cut(s) 118
BstPI GGTNACC 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 156, 359
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 4 cut(s) 69, 140, 279, 367
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 242
Cfr13I GGNCC 4 cut(s) 36, 87, 357, 467
CpoI CGGWCCG 1 cut(s) 87
CspI CGGWCCG 1 cut(s) 87
CviAII CATG 4 cut(s) 27, 46, 115, 399
DdeI CTNAG 6 cut(s) 41, 100, 124, 146, 170, 424
DpnI GATC 2 cut(s) 233, 438
DpnII GATC 2 cut(s) 231, 436
Eco130I CCWWGG 1 cut(s) 18
Eco31I GGTCTC 2 cut(s) 28, 55
Eco47I GGWCC 4 cut(s) 36, 87, 357, 467
Eco91I GGTNACC 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 467
EcoO65I GGTNACC 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 156, 359
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 4 cut(s) 30, 49, 118, 402
FaiI YATR 5 cut(s) 28, 47, 116, 400, 478
FaqI GGGAC 1 cut(s) 22
FatI CATG 4 cut(s) 26, 45, 114, 398
FauI CCCGC 1 cut(s) 339
FbaI TGATCA 1 cut(s) 231
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 4 cut(s) 58, 129, 268, 381
FokI GGATG 1 cut(s) 381
Fsp4HI GCNGC 4 cut(s) 58, 129, 268, 381
FspBI CTAG 1 cut(s) 54
GluI GCNGC 4 cut(s) 58, 129, 268, 381
GsuI CTGGAG 2 cut(s) 140, 355
HaeIII GGCC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 4 cut(s) 30, 49, 118, 402
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 5 cut(s) 98, 104, 122, 148, 205
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 5 cut(s) 91, 103, 121, 310, 320
Hpy188III TCNNGA 1 cut(s) 372
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 3 cut(s) 142, 193, 281
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 5 cut(s) 251, 267, 297, 383, 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 151
HpyF3I CTNAG 6 cut(s) 41, 100, 124, 146, 170, 424
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 4 cut(s) 30, 49, 118, 402
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 2 cut(s) 231, 436
LmnI GCTCC 3 cut(s) 159, 336, 374
Lsp1109I GCAGC 4 cut(s) 69, 140, 279, 367
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 2 cut(s) 206, 254
MalI GATC 2 cut(s) 233, 438
MboI GATC 2 cut(s) 231, 436
MfeI CAATTG 1 cut(s) 292
MluCI AATT 5 cut(s) 4, 92, 163, 292, 453
MlyI GAGTC 5 cut(s) 92, 98, 116, 157, 214
MnlI CCTC 4 cut(s) 50, 119, 232, 236
MroXI GAANNNNTTC 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 158, 361
MunI CAATTG 1 cut(s) 292
MvaI CCWGG 2 cut(s) 158, 361
MwoI GCNNNNNNNGC 2 cut(s) 137, 151
NdeII GATC 2 cut(s) 231, 436
NlaIII CATG 4 cut(s) 30, 49, 118, 402
NlaIV GGNNCC 2 cut(s) 38, 468
NmuCI GTSAC 2 cut(s) 206, 254
NspI RCATGY 1 cut(s) 118
PaqCI CACCTGC 1 cut(s) 242
PciI ACATGT 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 4 cut(s) 59, 130, 269, 382
PleI GAGTC 5 cut(s) 92, 98, 116, 156, 213
PpsI GAGTC 5 cut(s) 92, 98, 116, 156, 213
PpuMI RGGWCCY 1 cut(s) 467
PscI ACATGT 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 156, 359
PspEI GGTNACC 1 cut(s) 254
PspGI CCWGG 2 cut(s) 156, 359
PspN4I GGNNCC 2 cut(s) 38, 468
PspPI GGNCC 4 cut(s) 36, 87, 357, 467
PspPPI RGGWCCY 1 cut(s) 467
PstI CTGCAG 1 cut(s) 385
Rsr2I CGGWCCG 1 cut(s) 87
RsrII CGGWCCG 1 cut(s) 87
SalI GTCGAC 1 cut(s) 428
SatI GCNGC 4 cut(s) 58, 129, 268, 381
Sau3AI GATC 2 cut(s) 231, 436
Sau96I GGNCC 4 cut(s) 36, 87, 357, 467
SchI GAGTC 5 cut(s) 92, 98, 116, 157, 214
ScrFI CCNGG 2 cut(s) 158, 361
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 4 cut(s) 36, 87, 357, 467
Sse9I AATT 5 cut(s) 4, 92, 163, 292, 453
SsiI CCGC 3 cut(s) 34, 85, 346
SspI AATATT 1 cut(s) 413
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 156, 359
StyI CCWWGG 1 cut(s) 18
TaiI ACGT 1 cut(s) 315
TaqI TCGA 4 cut(s) 96, 111, 220, 429
TasI AATT 5 cut(s) 4, 92, 163, 292, 453
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 2 cut(s) 206, 254
TseI GCWGC 4 cut(s) 57, 128, 267, 380
Tsp45I GTSAC 2 cut(s) 206, 254
TspDTI ATGAA 3 cut(s) 17, 383, 420
TspRI CASTG 1 cut(s) 348
VpaK11BI GGWCC 4 cut(s) 36, 87, 357, 467
XapI RAATTY 1 cut(s) 92
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 429
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 54
ZraI GACGTC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.