RLG00000007783

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017842
Physical Location & Seq
Forward (+)
21026879 .. 21027429
551 bp
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UTR
Exon/CDS
Intron
RLM00000007783

Sequence Viewer

Length: 387 bp
ATGATTAATCAAAGGCATTGCTTCAAGGGGCTCTCTGGGACGAATTCTATATCTGCTCCGGCGCCGACCCCCTTGGGTTCTCCGAGCCCTCCACCACCTCAACCAGGTTCGAAGTCGGATCCTCGCCTTTGGGGTTTACCCTGCGCCTTCAAGGTTGTCTGTCGAAACAAGAACACGATCTGTGCGCTGTTACAGCTCCCGATTTCGCCGTCGCCGACTTGGCGCAAGTCCGAGCCGCTCCGAGATCCGATAGGCCTTTGCTTCGTCTTCAATAATCCGATCAACTCTTCCGATCAGCTATTTATTGATGTAAGACTCTATGAGTCAATGGGAACCAAAGTAATATCAGAGTTTAGGCTTGGACGAACTGAATTTGTTGAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.1

Weight (kDa)

9.19

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccBSI CCGCTC 1 cut(s) 238
AciI CCGC 1 cut(s) 236
AclWI GGATC 3 cut(s) 113, 126, 239
AcsI RAATTY 2 cut(s) 43, 371
AcyI GRCGYC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 3 cut(s) 25, 151, 271
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 2 cut(s) 196, 298
AluI AGCT 2 cut(s) 196, 298
AlwI GGATC 3 cut(s) 113, 126, 239
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 2 cut(s) 43, 371
AseI ATTAAT 1 cut(s) 6
AspLEI GCGC 4 cut(s) 64, 146, 187, 225
AsuII TTCGAA 1 cut(s) 110
BamHI GGATCC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 33, 89
BbsI GAAGAC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 65
BglI GCCNNNNNGGC 1 cut(s) 220
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 105
BmiI GGNNCC 3 cut(s) 63, 120, 334
BmrFI CCNGG 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 259
Bpu14I TTCGAA 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMI GCAATG 1 cut(s) 16
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 1 cut(s) 255
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 33, 89
Bsp143I GATC 5 cut(s) 118, 177, 244, 279, 292
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 63, 120, 334
BspPI GGATC 3 cut(s) 113, 126, 239
BspT104I TTCGAA 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 5 cut(s) 118, 177, 244, 279, 292
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 292
BstACI GRCGYC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 4 cut(s) 64, 146, 187, 225
BstKTI GATC 5 cut(s) 121, 180, 247, 282, 295
BstMBI GATC 5 cut(s) 118, 177, 244, 279, 292
BstMWI GCNNNNNNNGC 2 cut(s) 193, 220
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 2 cut(s) 118, 244
BstYI RGATCY 2 cut(s) 118, 244
BsuRI GGCC 1 cut(s) 255
CfoI GCGC 4 cut(s) 64, 146, 187, 225
CsiI ACCWGGT 1 cut(s) 103
CviJI RGCY 7 cut(s) 31, 87, 196, 235, 255, 298, 358
CviKI_1 RGCY 7 cut(s) 31, 87, 196, 235, 255, 298, 358
DinI GGCGCC 1 cut(s) 63
DpnI GATC 5 cut(s) 120, 179, 246, 281, 294
DpnII GATC 5 cut(s) 118, 177, 244, 279, 292
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 72
Eco147I AGGCCT 1 cut(s) 255
Eco24I GRGCYC 2 cut(s) 33, 89
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 2 cut(s) 33, 89
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 72
FaiI YATR 2 cut(s) 50, 321
FaqI GGGAC 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 236
FriOI GRGCYC 2 cut(s) 33, 89
Fsp4HI GCNGC 1 cut(s) 236
GlaI GCGC 4 cut(s) 63, 145, 186, 224
GluI GCNGC 1 cut(s) 236
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 59
HhaI GCGC 4 cut(s) 64, 146, 187, 225
Hin1I GRCGYC 1 cut(s) 62
Hin6I GCGC 4 cut(s) 62, 144, 185, 223
HinP1I GCGC 4 cut(s) 62, 144, 185, 223
HinfI GANTC 2 cut(s) 315, 323
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 8 cut(s) 84, 118, 232, 242, 249, 279, 292, 349
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 220
Hsp92I GRCGYC 1 cut(s) 62
HspAI GCGC 4 cut(s) 62, 144, 185, 223
KasI GGCGCC 1 cut(s) 61
Kzo9I GATC 5 cut(s) 118, 177, 244, 279, 292
LmnI GCTCC 3 cut(s) 61, 201, 243
LpnPI CCDG 5 cut(s) 21, 72, 90, 117, 154
MabI ACCWGGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 189
MalI GATC 5 cut(s) 120, 179, 246, 281, 294
MbiI CCGCTC 1 cut(s) 238
MboI GATC 5 cut(s) 118, 177, 244, 279, 292
MboII GAAGA 2 cut(s) 259, 279
MflI RGATCY 2 cut(s) 118, 244
MhlI GDGCHC 2 cut(s) 33, 89
MluCI AATT 2 cut(s) 43, 371
Mly113I GGCGCC 1 cut(s) 62
MlyI GAGTC 2 cut(s) 309, 332
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 3 cut(s) 99, 108, 132
MseI TTAA 1 cut(s) 6
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 193, 220
NarI GGCGCC 1 cut(s) 62
NdeII GATC 5 cut(s) 118, 177, 244, 279, 292
NlaIV GGNNCC 3 cut(s) 63, 120, 334
NspV TTCGAA 1 cut(s) 110
PceI AGGCCT 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 2 cut(s) 309, 331
PluTI GGCGCC 1 cut(s) 65
PpsI GAGTC 2 cut(s) 309, 331
PshBI ATTAAT 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 3 cut(s) 63, 120, 334
PsuI RGATCY 2 cut(s) 118, 244
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 5 cut(s) 118, 177, 244, 279, 292
SchI GAGTC 2 cut(s) 309, 332
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 2 cut(s) 33, 89
SetI ASST 5 cut(s) 100, 109, 156, 198, 300
SexAI ACCWGGT 1 cut(s) 103
SfoI GGCGCC 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 110
Sse9I AATT 2 cut(s) 43, 371
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 1 cut(s) 236
SspDI GGCGCC 1 cut(s) 61
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 72
TaqI TCGA 2 cut(s) 110, 163
TasI AATT 2 cut(s) 43, 371
TauI GCSGC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
VspI ATTAAT 1 cut(s) 6
XagI CCTNNNNNAGG 1 cut(s) 102
XapI RAATTY 2 cut(s) 43, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.