Rroxscaffold_2G00137830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017842
Physical Location & Seq
Forward (+)
75830933 .. 75834789
3857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137830.1

Sequence Viewer

Length: 468 bp
ATGTCGTTTTTGCGGCTCAAGATCATGTACATGCCTAGTCCAAGCGGCAACTTCGGTCCACGTTTTGTATTCGGACTCTTGAGTTTCTCGTTTGCTTATGAAATTAAGGTGTTTAAAAGCTTCTCCAGTTCTCCCCCACACACAATCGGAAAGCCAATGAAAACTACAGCATTCCGCTCAACCGAAGCCATCACACACTTGGCTCCGGAGACAATGTTCCTGCATCACCTCGACACCGTCAGCCACACGCTTTGCATCTTGGGAAGGAGTTATAAACCGCCACCGGCCTCATGGAATTCAAAAGGACAAGCATTCCTATTATTCGAAACCAACCCTTTTCGTTTCGTTGGCAATCAGGAGGAGGGGTCGTCCTGGCATTATGCCCCAAAACTTCTTTGGAAAGGTCATAAGAGCAAGTCCACCGGTATGACTTTGTCCGGGCAAAGTGAGGGAATGATGATGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.52

Weight (kDa)

9.84

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccBSI CCGCTC 1 cut(s) 177
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 4 cut(s) 13, 45, 175, 278
AcsI RAATTY 1 cut(s) 295
AfaI GTAC 1 cut(s) 29
AgeI ACCGGT 1 cut(s) 422
AgsI TTSAA 1 cut(s) 300
AjnI CCWGG 1 cut(s) 371
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 203
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 295
AsiGI ACCGGT 1 cut(s) 422
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 218
AsuII TTCGAA 1 cut(s) 324
AvaII GGWCC 1 cut(s) 56
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 373
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 2 cut(s) 14, 46
BlsI GCNGC 2 cut(s) 15, 47
Bme1390I CCNGG 2 cut(s) 373, 439
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 2 cut(s) 373, 439
BmsI GCATC 2 cut(s) 232, 264
BpmI CTGGAG 1 cut(s) 109
Bpu14I TTCGAA 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 439
BsaWI WCCGGW 2 cut(s) 205, 422
BsaXI ACNNNNNCTCC 6 cut(s) 200, 230, 350, 353, 380, 383
Bse118I RCCGGY 2 cut(s) 283, 422
Bse1I ACTGG 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 1 cut(s) 373
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 374
BshFI GGCC 1 cut(s) 287
BshTI ACCGGT 1 cut(s) 422
BsiSI CCGG 4 cut(s) 206, 284, 423, 438
BsmAI GTCTC 1 cut(s) 203
BsmI GAATGC 2 cut(s) 170, 311
BsnI GGCC 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 324
Bsp13I TCCGGA 1 cut(s) 205
Bsp1407I TGTACA 1 cut(s) 27
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 4 cut(s) 13, 45, 175, 278
BspANI GGCC 1 cut(s) 287
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 204
BspT104I TTCGAA 1 cut(s) 324
BsrBI CCGCTC 1 cut(s) 177
BsrFI RCCGGY 2 cut(s) 283, 422
BsrGI TGTACA 1 cut(s) 27
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 2 cut(s) 283, 422
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 238
BstAUI TGTACA 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 324
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 373
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 2 cut(s) 371, 437
BstSFI CTRYAG 1 cut(s) 165
BsuRI GGCC 1 cut(s) 287
Cfr10I RCCGGY 2 cut(s) 283, 422
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 28
CspAI ACCGGT 1 cut(s) 422
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 3 cut(s) 25, 31, 291
CviJI RGCY 7 cut(s) 16, 120, 154, 188, 203, 243, 287
CviKI_1 RGCY 7 cut(s) 16, 120, 154, 188, 203, 243, 287
CviQI GTAC 1 cut(s) 28
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
DraI TTTAAA 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 371
FaeI CATG 3 cut(s) 28, 34, 294
FaiI YATR 8 cut(s) 26, 32, 99, 273, 292, 381, 408, 428
FatI CATG 3 cut(s) 24, 30, 290
Fnu4HI GCNGC 2 cut(s) 14, 46
Fsp4HI GCNGC 2 cut(s) 14, 46
FspBI CTAG 1 cut(s) 36
GluI GCNGC 2 cut(s) 14, 46
GsuI CTGGAG 1 cut(s) 109
HaeIII GGCC 1 cut(s) 287
HapII CCGG 4 cut(s) 206, 284, 423, 438
Hin1II CATG 3 cut(s) 28, 34, 294
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 1 cut(s) 75
HpaII CCGG 4 cut(s) 206, 284, 423, 438
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 59, 420
Hpy188I TCNGA 2 cut(s) 74, 149
Hpy188III TCNNGA 4 cut(s) 19, 79, 206, 356
Hpy8I GTNNAC 2 cut(s) 59, 420
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 223, 255
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 3 cut(s) 28, 34, 294
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 9 cut(s) 139, 219, 233, 297, 341, 358, 385, 436, 451
LweI GCATC 2 cut(s) 232, 264
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 61
MalI GATC 1 cut(s) 23
MbiI CCGCTC 1 cut(s) 177
MboI GATC 1 cut(s) 21
MluCI AATT 2 cut(s) 102, 295
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 5 cut(s) 239, 298, 352, 355, 442
MroI TCCGGA 1 cut(s) 205
MseI TTAA 2 cut(s) 105, 114
MslI CAYNNNNRTG 2 cut(s) 29, 425
MspI CCGG 4 cut(s) 206, 284, 423, 438
MspR9I CCNGG 2 cut(s) 373, 439
Mva1269I GAATGC 2 cut(s) 170, 311
MvaI CCWGG 1 cut(s) 373
NciI CCSGG 1 cut(s) 439
NdeII GATC 1 cut(s) 21
NlaIII CATG 3 cut(s) 28, 34, 294
NlaIV GGNNCC 1 cut(s) 204
NspI RCATGY 1 cut(s) 34
NspV TTCGAA 1 cut(s) 324
PctI GAATGC 2 cut(s) 170, 311
PflFI GACNNNGTC 2 cut(s) 236, 433
PinAI ACCGGT 1 cut(s) 422
PkrI GCNGC 2 cut(s) 15, 47
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PsiI TTATAA 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 56
PsyI GACNNNGTC 2 cut(s) 236, 433
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 2 cut(s) 29, 425
SaqAI TTAA 2 cut(s) 105, 114
SatI GCNGC 2 cut(s) 14, 46
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 373, 439
SetI ASST 5 cut(s) 64, 111, 122, 231, 406
SfaNI GCATC 2 cut(s) 232, 264
SfcI CTRYAG 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 324
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 29, 425
SmlI CTYRAG 2 cut(s) 17, 79
SmoI CTYRAG 2 cut(s) 17, 79
Sse9I AATT 2 cut(s) 102, 295
SsiI CCGC 4 cut(s) 13, 45, 175, 278
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 371, 437
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 231, 324
TaqII GACCGA 1 cut(s) 44
TasI AATT 2 cut(s) 102, 295
TatI WGTACW 1 cut(s) 27
TauI GCSGC 2 cut(s) 16, 48
Tru1I TTAA 2 cut(s) 105, 114
Tru9I TTAA 2 cut(s) 105, 114
TspDTI ATGAA 2 cut(s) 114, 173
Tth111I GACNNNGTC 2 cut(s) 236, 433
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 295
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 3 cut(s) 196, 288, 393
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.