Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0017842

Physical Location & Seq

Genomic Coordinates Reverse (-)

26096152 .. 26096464

Gene Structure 313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG161800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGCAGCGACGGCTTCGGCGCCGCCGTGGAGCCCGGAAGACGACCTCCTCCTCAAGAACGCCATCGAGGGAGGTGCTTCTCTGGAAGCGCTTGCCAGAGGAGCGGTCAGATTCTCCCGCAAATTCACGGTGGGAGATTTGTGTCGTTTTTCAGCTCAAGATCGTGTACATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0002151 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005844 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0010639 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016579 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030234 GO:0030425 GO:0031011 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033202 GO:0034046 GO:0034708 GO:0035097 GO:0036211 GO:0036477 GO:0042995 GO:0043005 GO:0043025 GO:0043086 GO:0043170 GO:0043204 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044297 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044463 GO:0044464 GO:0044665 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070603 GO:0070646 GO:0070647 GO:0070717 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097346 GO:0097447 GO:0097458 GO:0098772 GO:0120025 GO:0120038 GO:1900180 GO:1900182 GO:1901363 GO:1901564 GO:1902493 GO:1902494 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904749 GO:1904751 GO:1904949 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

FHA MCRS_N

Protein Analysis

58

Amino Acids

6.17

Weight (kDa)

6.53

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017842)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007783
rosa_multiflora	Rmu_sc0002863.1_g000012 Rmu_sc0010917.1_g000016
rosa_roxburghii	Rroxscaffold_1G00027720 Rroxscaffold_2G00137830 Rroxscaffold_5G00364870 Rroxscaffold_5G00364880
rosa_samantha	Rh1BG161800 Rh1DG192100 Rh5AG160500 Rh5CG416400 Rh7DG215300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccBSI	CCGCTC	1 cut(s)	104
AciI	CCGC	3 cut(s)	23, 104, 118
AcsI	RAATTY	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	168
AfeI	AGCGCT	1 cut(s)	90
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Aor51HI	AGCGCT	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	2 cut(s)	22, 91
AsuC2I	CCSGG	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	2 cut(s)	10, 27
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BcnI	CCSGG	1 cut(s)	35
BfaI	CTAG	1 cut(s)	175
BfoI	RGCGCY	2 cut(s)	23, 92
BisI	GCNGC	2 cut(s)	6, 23
BlsI	GCNGC	2 cut(s)	7, 24
Bme1390I	CCNGG	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	21, 32
BmrFI	CCNGG	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	38, 141
BpuMI	CCSGG	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	26
BseRI	GAGGAG	3 cut(s)	38, 41, 114
BseXI	GCAGC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp1407I	TGTACA	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	3 cut(s)	23, 104, 118
BspLI	GGNNCC	2 cut(s)	21, 32
BspT107I	GGYRCC	1 cut(s)	19
BsrBI	CCGCTC	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	26
BstH2I	RGCGCY	2 cut(s)	23, 92
BstHHI	GCGC	2 cut(s)	22, 91
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 101
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	2 cut(s)	22, 91
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	3 cut(s)	14, 33, 155
CviKI_1	RGCY	3 cut(s)	14, 33, 155
CviQI	GTAC	1 cut(s)	167
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	35
Eco47III	AGCGCT	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	35
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
FaeI	CATG	1 cut(s)	173
FaiI	YATR	1 cut(s)	171
FatI	CATG	1 cut(s)	169
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	2 cut(s)	6, 23
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	6, 23
FspBI	CTAG	1 cut(s)	175
GlaI	GCGC	2 cut(s)	21, 90
GluI	GCNGC	2 cut(s)	6, 23
HaeII	RGCGCY	2 cut(s)	23, 92
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	2 cut(s)	22, 91
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	173
Hin6I	GCGC	2 cut(s)	20, 89
HinP1I	GCGC	2 cut(s)	20, 89
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	3 cut(s)	55, 83, 158
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 101
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	173
HspAI	GCGC	2 cut(s)	20, 89
KasI	GGCGCC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	30, 101
LpnPI	CCDG	3 cut(s)	48, 68, 109
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	175
MalI	GATC	1 cut(s)	162
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	1 cut(s)	122
Mly113I	GGCGCC	1 cut(s)	20
MnlI	CCTC	6 cut(s)	56, 59, 61, 62, 65, 92
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	11, 101
NarI	GGCGCC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	2 cut(s)	21, 32
NspI	RCATGY	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	7, 24
PluTI	GGCGCC	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	21, 32
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SatI	GCNGC	2 cut(s)	6, 23
Sau3AI	GATC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	3 cut(s)	48, 76, 157
SfoI	GGCGCC	1 cut(s)	21
SmlI	CTYRAG	2 cut(s)	53, 156
SmoI	CTYRAG	2 cut(s)	53, 156
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	3 cut(s)	23, 104, 118
SspDI	GGCGCC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	122
TatI	WGTACW	1 cut(s)	166
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	111
TseI	GCWGC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.