Rh7DG215300

N-terminal region of micro-spherule protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017842
Physical Location & Seq
Reverse (-)
20752449 .. 20752748
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG215300.1

Sequence Viewer

Length: 207 bp
ATGGCAGCGACGGCTTCGGCGCCGCCGTGGAGCCCGGAAGACGACCTCCTCCTCAAGAACGCCATCGAGGTATTCATCTTCTGCAATTTTCCGATTGAGGAGGTGCTTCTCTGGAAGCGCTTGCCAGAGGAGCGGTCAGATTCTCCCGCAAATTCACGGTGGGAGATTTGTGTCGTTTTTGTAGCTCAAGATCGTGTACATGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0002151 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005844 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0010639 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016579 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030234 GO:0030425 GO:0031011 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033202 GO:0034046 GO:0034708 GO:0035097 GO:0036211 GO:0036477 GO:0042995 GO:0043005 GO:0043025 GO:0043086 GO:0043170 GO:0043204 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044297 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044463 GO:0044464 GO:0044665 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070603 GO:0070646 GO:0070647 GO:0070717 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097346 GO:0097447 GO:0097458 GO:0098772 GO:0120025 GO:0120038 GO:1900180 GO:1900182 GO:1901363 GO:1901564 GO:1902493 GO:1902494 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904749 GO:1904751 GO:1904949 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
FHA MCRS_N

Protein Analysis

68

Amino Acids

7.77

Weight (kDa)

4.57

Isoelectric Point (pI)

97.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 133
AciI CCGC 3 cut(s) 23, 133, 147
AcsI RAATTY 1 cut(s) 151
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 1 cut(s) 198
AfeI AGCGCT 1 cut(s) 119
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Aor51HI AGCGCT 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 151
AspLEI GCGC 2 cut(s) 22, 120
AsuC2I CCSGG 1 cut(s) 35
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 71
BceAI ACGGC 2 cut(s) 10, 27
BcnI CCSGG 1 cut(s) 35
BfaI CTAG 1 cut(s) 205
BfoI RGCGCY 2 cut(s) 23, 121
BisI GCNGC 2 cut(s) 6, 23
BlsI GCNGC 2 cut(s) 7, 24
Bme1390I CCNGG 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 21, 32
BmrFI CCNGG 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 45
BpuEI CTTGAG 2 cut(s) 38, 171
BpuMI CCSGG 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 26
BseRI GAGGAG 4 cut(s) 38, 41, 113, 143
BseXI GCAGC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 35
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 3 cut(s) 23, 133, 147
BspLI GGNNCC 2 cut(s) 21, 32
BspT107I GGYRCC 1 cut(s) 19
BsrBI CCGCTC 1 cut(s) 133
BsrGI TGTACA 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 1 cut(s) 190
BssNI GRCGYC 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 122
BstDSI CCRYGG 1 cut(s) 26
BstH2I RGCGCY 2 cut(s) 23, 121
BstHHI GCGC 2 cut(s) 22, 120
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 11, 130
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 122
CfoI GCGC 2 cut(s) 22, 120
Csp6I GTAC 1 cut(s) 197
CviAII CATG 1 cut(s) 200
CviJI RGCY 3 cut(s) 14, 33, 185
CviKI_1 RGCY 3 cut(s) 14, 33, 185
CviQI GTAC 1 cut(s) 197
DinI GGCGCC 1 cut(s) 21
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 35
Eco47III AGCGCT 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 35
EgeI GGCGCC 1 cut(s) 21
EheI GGCGCC 1 cut(s) 21
FaeI CATG 1 cut(s) 203
FaiI YATR 1 cut(s) 201
FatI CATG 1 cut(s) 199
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 6, 23
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 6, 23
FspBI CTAG 1 cut(s) 205
GlaI GCGC 2 cut(s) 21, 119
GluI GCNGC 2 cut(s) 6, 23
HaeII RGCGCY 2 cut(s) 23, 121
HapII CCGG 1 cut(s) 35
HhaI GCGC 2 cut(s) 22, 120
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 2 cut(s) 20, 118
HinP1I GCGC 2 cut(s) 20, 118
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 93, 139
Hpy188III TCNNGA 3 cut(s) 55, 112, 188
Hpy8I GTNNAC 1 cut(s) 197
Hpy99I CGWCG 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 130
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 2 cut(s) 20, 118
KasI GGCGCC 1 cut(s) 19
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 30, 130
LpnPI CCDG 3 cut(s) 48, 97, 138
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 205
MalI GATC 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 133
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 50, 70
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 2 cut(s) 85, 151
Mly113I GGCGCC 1 cut(s) 20
MnlI CCTC 7 cut(s) 56, 59, 61, 62, 91, 94, 121
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 11, 130
NarI GGCGCC 1 cut(s) 20
NciI CCSGG 1 cut(s) 35
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 21, 32
NspI RCATGY 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 7, 24
PluTI GGCGCC 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 21, 32
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SatI GCNGC 2 cut(s) 6, 23
Sau3AI GATC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 35
SetI ASST 4 cut(s) 48, 72, 105, 187
SfoI GGCGCC 1 cut(s) 21
SmlI CTYRAG 2 cut(s) 53, 186
SmoI CTYRAG 2 cut(s) 53, 186
Sse9I AATT 2 cut(s) 85, 151
SsiI CCGC 3 cut(s) 23, 133, 147
SspDI GGCGCC 1 cut(s) 19
SspMI CTAG 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 85, 151
TatI WGTACW 1 cut(s) 196
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 1 cut(s) 140
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 64
XapI RAATTY 1 cut(s) 151
XceI RCATGY 1 cut(s) 203
XspI CTAG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.