Rroxscaffold_5G00364870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017842
Physical Location & Seq
Forward (+)
46090268 .. 46105885
15618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364870.1

Sequence Viewer

Length: 417 bp
ATGGAAGAGATCAGCCCCTTCCCATCTATAAAAGTTGGGCGTCTTCCGCTACACACCTCTAGCGGAGTCCTCTTTTCATCTCGCAGTCGCGTGCTTCGTTCGCCGCAATATCGCTCAATAAAGTCCCACCGTGCACGTCTCACCGGACGCCGCTTCTGCTGCGGTCGGCGGTGGGATATCCGCCGGCGGCGGATCCCGAGGCCACGCCTCACTCGGACAACGACCGCCACGCGGCGTTACGGTCGACAATCCCTACGGGACACGGGGACTTGTCAACGATCCTACGACGGCCCGATCGAGCACGTTGACCCCCGTCACCGGGGTGCTAAAGATTGGGGTGGGCGTCCGGACCCGAAAGACCGAGGAACCGACCCGAACCGAGGAAAAAAGCCCGATTCGGTTCGGTTTTCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.05

Weight (kDa)

11.73

Isoelectric Point (pI)

73.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 244
AccII CGCG 2 cut(s) 90, 232
AccIII TCCGGA 1 cut(s) 346
AclWI GGATC 3 cut(s) 187, 200, 273
AcyI GRCGYC 3 cut(s) 40, 148, 343
AfiI CCNNNNNNNGG 4 cut(s) 231, 318, 319, 380
AjiI CACGTC 1 cut(s) 137
AleI CACNNNNGTG 1 cut(s) 321
Alw21I GWGCWC 2 cut(s) 136, 303
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 132
AlwI GGATC 3 cut(s) 187, 200, 273
Ama87I CYCGRG 1 cut(s) 196
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 2 cut(s) 200, 289
ApaLI GTGCAC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 159
AspS9I GGNCC 2 cut(s) 290, 349
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 133, 308
AsuII TTCGAA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 196
AvaII GGWCC 1 cut(s) 349
BaeGI GKGCMC 1 cut(s) 136
BamHI GGATCC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 2 cut(s) 136, 303
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 304
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 60
BisI GCNGC 5 cut(s) 104, 151, 160, 188, 233
BlsI GCNGC 5 cut(s) 105, 152, 161, 189, 234
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 196
BmgBI CACGTC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 290, 349
BmiI GGNNCC 3 cut(s) 194, 351, 367
BmrFI CCNGG 1 cut(s) 320
BoxI GACNNNNGTC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 320
BsaHI GRCGYC 3 cut(s) 40, 148, 343
BsaJI CCNNGG 4 cut(s) 197, 319, 361, 379
BsaWI WCCGGW 2 cut(s) 143, 346
Bsc4I CCNNNNNNNGG 4 cut(s) 231, 318, 319, 380
Bse118I RCCGGY 1 cut(s) 183
BseAI TCCGGA 1 cut(s) 346
BseDI CCNNGG 4 cut(s) 197, 319, 361, 379
BseLI CCNNNNNNNGG 4 cut(s) 231, 318, 319, 380
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 2 cut(s) 90, 232
Bsh1285I CGRYCG 4 cut(s) 166, 225, 244, 297
BshFI GGCC 2 cut(s) 202, 291
BsiEI CGRYCG 4 cut(s) 166, 225, 244, 297
BsiHKAI GWGCWC 2 cut(s) 136, 303
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 4 cut(s) 144, 184, 319, 347
BslFI GGGAC 3 cut(s) 109, 272, 280
BslI CCNNNNNNNGG 4 cut(s) 231, 318, 319, 380
BsmAI GTCTC 1 cut(s) 143
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 3 cut(s) 109, 272, 280
BsnI GGCC 2 cut(s) 202, 291
BsoBI CYCGRG 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 136, 303
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 4 cut(s) 9, 192, 278, 294
BspANI GGCC 2 cut(s) 202, 291
BspEI TCCGGA 1 cut(s) 346
BspFNI CGCG 2 cut(s) 90, 232
BspLI GGNNCC 3 cut(s) 194, 351, 367
BspPI GGATC 3 cut(s) 187, 200, 273
BspT104I TTCGAA 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 183
BssECI CCNNGG 4 cut(s) 197, 319, 361, 379
BssMI GATC 4 cut(s) 9, 192, 278, 294
BssNI GRCGYC 3 cut(s) 40, 148, 343
Bst4CI ACNGT 2 cut(s) 131, 242
BstACI GRCGYC 3 cut(s) 40, 148, 343
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 2 cut(s) 92, 185
BstFNI CGCG 2 cut(s) 90, 232
BstKTI GATC 4 cut(s) 12, 195, 281, 297
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 4 cut(s) 9, 192, 278, 294
BstMCI CGRYCG 4 cut(s) 166, 225, 244, 297
BstMWI GCNNNNNNNGC 4 cut(s) 46, 100, 156, 159
BstPAI GACNNNNGTC 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 136
BstUI CGCG 2 cut(s) 90, 232
BstV1I GCAGC 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 2 cut(s) 202, 291
BtrI CACGTC 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 92, 185
Cfr10I RCCGGY 1 cut(s) 183
Cfr13I GGNCC 2 cut(s) 290, 349
CseI GACGC 3 cut(s) 29, 156, 332
CviJI RGCY 4 cut(s) 15, 202, 291, 391
CviKI_1 RGCY 4 cut(s) 15, 202, 291, 391
DpnI GATC 4 cut(s) 11, 194, 280, 296
DpnII GATC 4 cut(s) 9, 192, 278, 294
EciI GGCGGA 2 cut(s) 170, 205
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 349
Eco88I CYCGRG 1 cut(s) 196
EcoRV GATATC 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 143
FaiI YATR 1 cut(s) 29
FaqI GGGAC 3 cut(s) 109, 272, 280
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 5 cut(s) 104, 151, 160, 188, 233
Fsp4HI GCNGC 5 cut(s) 104, 151, 160, 188, 233
FspBI CTAG 1 cut(s) 60
GluI GCNGC 5 cut(s) 104, 151, 160, 188, 233
HaeIII GGCC 2 cut(s) 202, 291
HapII CCGG 4 cut(s) 144, 184, 319, 347
HgaI GACGC 3 cut(s) 29, 156, 332
Hin1I GRCGYC 3 cut(s) 40, 148, 343
HincII GTYRAC 3 cut(s) 245, 275, 307
HindII GTYRAC 3 cut(s) 245, 275, 307
HinfI GANTC 2 cut(s) 66, 395
HpaII CCGG 4 cut(s) 144, 184, 319, 347
HphI GGTGA 2 cut(s) 133, 308
Hpy166II GTNNAC 4 cut(s) 134, 245, 275, 307
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 2 cut(s) 196, 347
Hpy8I GTNNAC 4 cut(s) 134, 245, 275, 307
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 2 cut(s) 131, 242
HpyCH4IV ACGT 2 cut(s) 136, 303
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 100, 156, 159
HpySE526I ACGT 2 cut(s) 136, 303
Hsp92I GRCGYC 3 cut(s) 40, 148, 343
Kpn2I TCCGGA 1 cut(s) 346
KroI GCCGGC 1 cut(s) 183
KroNI GCCGGC 1 cut(s) 185
Kzo9I GATC 4 cut(s) 9, 192, 278, 294
LpnPI CCDG 4 cut(s) 157, 197, 332, 360
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 1 cut(s) 60
MaeII ACGT 2 cut(s) 136, 303
MaeIII GTNAC 2 cut(s) 236, 314
MalI GATC 4 cut(s) 11, 194, 280, 296
MboI GATC 4 cut(s) 9, 192, 278, 294
MboII GAAGA 2 cut(s) 17, 35
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 136, 303
MluCI AATT 1 cut(s) 412
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 6 cut(s) 67, 80, 192, 218, 356, 374
MreI CGCCGGCG 1 cut(s) 183
MroI TCCGGA 1 cut(s) 346
MroNI GCCGGC 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 321
MspI CCGG 4 cut(s) 144, 184, 319, 347
MspR9I CCNGG 1 cut(s) 320
MvnI CGCG 2 cut(s) 90, 232
MwoI GCNNNNNNNGC 4 cut(s) 46, 100, 156, 159
NaeI GCCGGC 1 cut(s) 185
NciI CCSGG 1 cut(s) 320
NdeII GATC 4 cut(s) 9, 192, 278, 294
NgoMIV GCCGGC 1 cut(s) 183
NlaIV GGNNCC 3 cut(s) 194, 351, 367
NmuCI GTSAC 1 cut(s) 314
NspV TTCGAA 1 cut(s) 410
OliI CACNNNNGTG 1 cut(s) 321
PcsI WCGNNNNNNNCGW 2 cut(s) 94, 294
PdiI GCCGGC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 395
PkrI GCNGC 5 cut(s) 105, 152, 161, 189, 234
Ple19I CGATCG 1 cut(s) 297
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PshAI GACNNNNGTC 1 cut(s) 312
PspN4I GGNNCC 3 cut(s) 194, 351, 367
PspPI GGNCC 2 cut(s) 290, 349
PsuI RGATCY 1 cut(s) 192
PvuI CGATCG 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 321
SalI GTCGAC 1 cut(s) 243
SatI GCNGC 5 cut(s) 104, 151, 160, 188, 233
Sau3AI GATC 4 cut(s) 9, 192, 278, 294
Sau96I GGNCC 2 cut(s) 290, 349
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 2 cut(s) 136, 303
SetI ASST 3 cut(s) 59, 139, 306
SfuI TTCGAA 1 cut(s) 410
SgrAI CRCCGGYG 1 cut(s) 183
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 321
Sse9I AATT 1 cut(s) 412
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 131, 242
TaiI ACGT 2 cut(s) 139, 306
TaqI TCGA 3 cut(s) 244, 297, 410
TaqII GACCGA 1 cut(s) 375
TasI AATT 1 cut(s) 412
TauI GCSGC 4 cut(s) 106, 153, 190, 235
TfiI GAWTC 1 cut(s) 395
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 66
VneI GTGCAC 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 244
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.